Re: Advice on improving a analysis on images of nanoparticles
I can always adapt this example (http://pythonvision.org/basic-tutorial) which uses pymorph and mahotaos to counting nuceli and segments the image as a gallery example for skimage (obviously acknowledging the original tutorial). Or is it bad form to copy/use another example.
Michael. --
On 20/11/2013 2:13 pm, St�fan van der Walt wrote:
On 20 Nov 2013 07:33, "Juan Nunez-Iglesias" <jni.soma@gmail.com mailto:jni.soma@gmail.com> wrote:
I'm guessing you are applying label() directly to your image, which
is not the right way to use it.
Looks like isolating objects is a common problem. Time for another gallery example? We already have the coins, but perhaps something more realistic with some biological data.
St�fan
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@Guillaume, please contribute the example ASAP because I'm struggling with the exact same problem! =D In particular, the nuclei example from pythonvision is not ideal because they gloss over a lot of parameter tuning that is much easier to deal with in 2D than 3D. I'll be happy to hear about your experience!
Juan.
On Wed, Nov 20, 2013 at 9:50 PM, Brickle Macho bricklemacho@gmail.comwrote:
I can always adapt this example (http://pythonvision.org/basic-tutorial) which uses pymorph and mahotaos to counting nuceli and segments the image as a gallery example for skimage (obviously acknowledging the original tutorial). Or is it bad form to copy/use another example.
Michael.
On 20/11/2013 2:13 pm, Stéfan van der Walt wrote:
On 20 Nov 2013 07:33, "Juan Nunez-Iglesias" jni.soma@gmail.com wrote:
I'm guessing you are applying label() directly to your image, which is
not the right way to use it.
Looks like isolating objects is a common problem. Time for another gallery example? We already have the coins, but perhaps something more realistic with some biological data.
Stéfan
You received this message because you are subscribed to the Google Groups "scikit-image" group. To unsubscribe from this group and stop receiving emails from it, send an email to scikit-image+unsubscribe@googlegroups.com. For more options, visit https://groups.google.com/groups/opt_out.
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On Wed, Nov 20, 2013 at 12:50 PM, Brickle Macho bricklemacho@gmail.com wrote:
I can always adapt this example (http://pythonvision.org/basic-tutorial) which uses pymorph and mahotaos to counting nuceli and segments the image as a gallery example for skimage (obviously acknowledging the original tutorial). Or is it bad form to copy/use another example.
I think you should ask Luis for permission, just to be on the safe side.
But this reminds me: someone needs to implement voronoi! Should be quite fun, actually.
Stéfan
participants (3)
-
Brickle Macho -
Juan Nunez-Iglesias -
Stéfan van der Walt