Re: Advice on improving a analysis on images of nanoparticles
I can always adapt this example (http://pythonvision.org/basic-tutorial) which uses pymorph and mahotaos to counting nuceli and segments the image as a gallery example for skimage (obviously acknowledging the original tutorial). Or is it bad form to copy/use another example. Michael. -- On 20/11/2013 2:13 pm, St�fan van der Walt wrote:
On 20 Nov 2013 07:33, "Juan Nunez-Iglesias" <jni.soma@gmail.com <mailto:jni.soma@gmail.com>> wrote:
I'm guessing you are applying label() directly to your image, which
is not the right way to use it.
Looks like isolating objects is a common problem. Time for another gallery example? We already have the coins, but perhaps something more realistic with some biological data.
St�fan
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@Guillaume, please contribute the example ASAP because I'm struggling with the exact same problem! =D In particular, the nuclei example from pythonvision is not ideal because they gloss over a lot of parameter tuning that is much easier to deal with in 2D than 3D. I'll be happy to hear about your experience! Juan. On Wed, Nov 20, 2013 at 9:50 PM, Brickle Macho <bricklemacho@gmail.com>wrote:
I can always adapt this example (http://pythonvision.org/basic-tutorial) which uses pymorph and mahotaos to counting nuceli and segments the image as a gallery example for skimage (obviously acknowledging the original tutorial). Or is it bad form to copy/use another example.
Michael. --
On 20/11/2013 2:13 pm, Stéfan van der Walt wrote:
On 20 Nov 2013 07:33, "Juan Nunez-Iglesias" <jni.soma@gmail.com> wrote:
I'm guessing you are applying label() directly to your image, which is
not the right way to use it.
Looks like isolating objects is a common problem. Time for another gallery example? We already have the coins, but perhaps something more realistic with some biological data.
Stéfan -- You received this message because you are subscribed to the Google Groups "scikit-image" group. To unsubscribe from this group and stop receiving emails from it, send an email to scikit-image+unsubscribe@googlegroups.com. For more options, visit https://groups.google.com/groups/opt_out.
-- You received this message because you are subscribed to the Google Groups "scikit-image" group. To unsubscribe from this group and stop receiving emails from it, send an email to scikit-image+unsubscribe@googlegroups.com. For more options, visit https://groups.google.com/groups/opt_out.
On Wed, Nov 20, 2013 at 12:50 PM, Brickle Macho <bricklemacho@gmail.com> wrote:
I can always adapt this example (http://pythonvision.org/basic-tutorial) which uses pymorph and mahotaos to counting nuceli and segments the image as a gallery example for skimage (obviously acknowledging the original tutorial). Or is it bad form to copy/use another example.
I think you should ask Luis for permission, just to be on the safe side. But this reminds me: someone needs to implement voronoi! Should be quite fun, actually. Stéfan
participants (3)
-
Brickle Macho -
Juan Nunez-Iglesias -
Stéfan van der Walt