Hi Ron, and welcome to the community! 😊

scikit-image contains many functions for image processing and analysis; probably not as many as Fiji, but enough for the most common things and to get you started!

To use scikit-image you have to program in Python, which is a different language from ImageJ macros. (Even ImageJ Python scripts are actually Jython, which is based on an old version of Python — there are many similarities but many differences, and the biggest one is that you cannot easily access the ImageJ and Fiji functions from Python.)

Our documentation starts here:

https://scikit-image.org/docs/stable/

The list of all available functions is here:

https://scikit-image.org/docs/stable/api/api.html

and the gallery of examples, which shows you by example how to perform many common image analysis operations, is here:

https://scikit-image.org/docs/stable/auto_examples/index.html

We also have a getting started guide here:

https://scikit-image.org/docs/stable/user_guide.html

I'll also point you to a project that you might find useful, PyImageJ, which lets you call ImageJ functionality from Python. It's a little trickier to install and use, though.

https://github.com/imagej/pyimagej

For all of this you can get help on image.sc, so feel free to keep asking usage questions there!

Juan.

On Sun, 21 Feb 2021, at 5:01 AM, Ron DeSpain wrote:

I'm a veteran ImageJ/FIJI coder, and I'm transitioning to python.

is scikit-image an incorporation of ImageJ into python?

Can I run my ImageJ macros within scikit-image package?

What's the URL for the scikit-image function descriptions?

Thanks Ron DeSpain _______________________________________________ scikit-image mailing list -- scikit-image@python.org To unsubscribe send an email to scikit-image-leave@python.org https://mail.python.org/mailman3/lists/scikit-image.python.org/ Member address: jni@fastmail.com