hi tried installing skan, successful install, but getting error while using : --------------------------------------------------------------- from skan import csr Traceback (most recent call last): File "<input>", line 1, in <module> File "/home/etu/.eclipse/org.eclipse.platform_3.8_155965261/plugins/org.python.pydev_4.5.5.201603221110/pysrc/_pydev_bundle/pydev_import_hook.py", line 21, in do_import module = self._system_import(name, *args, **kwargs) File "/usr/local/lib/python2.7/dist-packages/skan/__init__.py", line 1, in <module> from .csr import skeleton_to_csgraph, branch_statistics, summarise File "/home/etu/.eclipse/org.eclipse.platform_3.8_155965261/plugins/org.python.pydev_4.5.5.201603221110/pysrc/_pydev_bundle/pydev_import_hook.py", line 21, in do_import module = self._system_import(name, *args, **kwargs) File "/usr/local/lib/python2.7/dist-packages/skan/csr.py", line 164 junction_centroids, *, spacing=1): ^ SyntaxError: invalid syntax On Thu, Nov 29, 2018 at 6:20 AM Juan Nunez-Iglesias wrote:

Hi Stefanie, Jean-Patrick, et al,

I invite you to look at my Skan (skeleton analysis) package. Docs here: https://jni.github.io/skan/ Paper here: https://peerj.com/articles/4312/ (the supplemental info mentions some of the edge cases we’ve taken care of.)

Skan is installable with "pip install skan" or "conda install -c conda-forge skan”.

I’m working on a new higher level Skeleton class, but it’s a WIP and you’ll need to install from source:

https://github.com/jni/skan/blob/5c0d23e5b1eab2fb06b25ff599e98eaa11d621e6/sk... (Not that that’s a big deal since the lib is pure Python.)

Comments, suggestions, and contributions are all welcome!

Juan.

On 29 Nov 2018, at 8:37 am, Jean-Patrick Pommier < jeanpatrick.pommier@gmail.com> wrote:

I tried this : https://dip4fish.blogspot.com/2014/05/construct-graph-from-skeleton-image-of...

Le mer. 28 nov. 2018 à 19:59, Stefanie Lück a écrit :

...

Dear all,

I have a question I use the medial axis skeletonization implementation of scikit-image. Is it possible to get the length of the medial axis and the number of branches growing from the medial axis?

Thank you very much in advance Stefanie

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