Mailman 3 October 2017 - Scikit-learn-commits

[scikit-learn/scikit-learn] d5b69d: FIX force pipeline steps to be list not a tuple (#...
by GitHub Oct. 21, 2017

Oct. 21, 2017

Branch: refs/heads/0.19.X Home: https://github.com/scikit-learn/scikit-learn Commit: d5b69d3c87b335fd3e8ece60e0af47144dc2ca9d https://github.com/scikit-learn/scikit-learn/commit/d5b69d3c87b335fd3e8ece6… Author: Joris Van den Bossche <jorisvandenbossche(a)gmail.com> Date: 2017-08-23 (Wed, 23 Aug 2017) Changed paths: M sklearn/pipeline.py M sklearn/tests/test_pipeline.py M sklearn/utils/metaestimators.py Log Message: ----------- FIX force pipeline steps to be list not a tuple (#9604) Commit: 85e1575e5f82c6ceb758dc506e63be239668c0e7 https://github.com/scikit-learn/scikit-learn/commit/85e1575e5f82c6ceb758dc5… Author: Rasul Kerimov <rkerimov(a)std.qu.edu.az> Date: 2017-08-23 (Wed, 23 Aug 2017) Changed paths: M sklearn/model_selection/_validation.py M sklearn/model_selection/tests/test_validation.py Log Message: ----------- [MRG+1] Resolve the problem with cross_val_predict(method=) when passing X or y as list (#9600) * issue 9592 * issue resolve * resolve issue * review * Delete sample.py * review Commit: bc97fb4b7ab198481653bba4dcc71e9ca39ad275 https://github.com/scikit-learn/scikit-learn/commit/bc97fb4b7ab198481653bba… Author: Andreas Mueller <t3kcit(a)gmail.com> Date: 2017-08-23 (Wed, 23 Aug 2017) Changed paths: M doc/modules/kernel_approximation.rst M doc/modules/sgd.rst M sklearn/linear_model/passive_aggressive.py M sklearn/linear_model/stochastic_gradient.py M sklearn/linear_model/tests/test_sgd.py Log Message: ----------- [MRG+1] FIX n_iter -> max_iter conversion in SGDClassifier (#9558) * move n_iter -> max_iter conversion and warning into _check_params in SGDClassifier for proper deprecation. * move validate_params so we have self._max_iter in _fit * validate params in init because the tests wants me to * better check for input validation * fix deprecation tests to call _validate_params * fix parameter validation in PA classifier * fix max_iter in doctests * pep8 /doctest whitespace * more doctests * maybe I'll find them all.... Commit: 79471138efc1d8135f35c40c1d575805a0c04fd6 https://github.com/scikit-learn/scikit-learn/commit/79471138efc1d8135f35c40… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-08-23 (Wed, 23 Aug 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- DOC what's new so far Commit: 506380b9ccf97bbd923b78a386f0ac7ca7dd75cc https://github.com/scikit-learn/scikit-learn/commit/506380b9ccf97bbd923b78a… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-08-23 (Wed, 23 Aug 2017) Changed paths: M sklearn/__init__.py Log Message: ----------- Update version Commit: f3412f80637c6ece5c810cdc958b132cef6f491b https://github.com/scikit-learn/scikit-learn/commit/f3412f80637c6ece5c810cd… Author: James Bourbeau <jrbourbeau(a)users.noreply.github.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M sklearn/model_selection/_validation.py M sklearn/model_selection/tests/test_validation.py Log Message: ----------- [MRG + 1] Removes estimator method check in cross_val_predict before fitting (#9641) * Removes check in cross_val_predict that checks estimator method before fitting * Adds regression test for issue #9639 Commit: 0b4c7bec26360d17d95feb8bb23546de42a713c9 https://github.com/scikit-learn/scikit-learn/commit/0b4c7bec26360d17d95feb8… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M examples/classification/plot_classifier_comparison.py Log Message: ----------- Remove inappropriate warm_start (#9638) Commit: 38f09969962cfcc6f6df57f03a83515883ac10eb https://github.com/scikit-learn/scikit-learn/commit/38f09969962cfcc6f6df57f… Author: Ben Lawson <balawson(a)bu.edu> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M doc/modules/clustering.rst Log Message: ----------- update dead link to pyamg (#9640) pyamg.org has moved to github Commit: aa5fe992e1bcf216e7e56a23ad7944247a07b06c https://github.com/scikit-learn/scikit-learn/commit/aa5fe992e1bcf216e7e56a2… Author: James Bourbeau <jrbourbeau(a)users.noreply.github.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M sklearn/model_selection/_validation.py Log Message: ----------- Modifies model_selection.cross_validate docstring (#9534) - Fixes rendering of docstring examples - Instead of importing cross_val_score in example, cross_validate is imported Commit: f7706a1f5fc5a9b95a28292361592fa0b361c3f2 https://github.com/scikit-learn/scikit-learn/commit/f7706a1f5fc5a9b95a28292… Author: Hanmin Qin <qinhanmin2005(a)sina.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M sklearn/model_selection/_validation.py Log Message: ----------- [MRG] DOC correct the link in model_selection.cross_validate (#9537) Commit: 0329c493b5fc09b6747f52bca3915dcf1edcf444 https://github.com/scikit-learn/scikit-learn/commit/0329c493b5fc09b6747f52b… Author: Nagarjuna Kumar <nagarjuna.412(a)gmail.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M doc/modules/feature_extraction.rst Log Message: ----------- Fixed typos in tf-idf term weighting section (#9547) Commit: 88c719c3bf9572af09b785071f1435bb2306a414 https://github.com/scikit-learn/scikit-learn/commit/88c719c3bf9572af09b7850… Author: diegodlh <delahera(a)gmail.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M doc/modules/ensemble.rst Log Message: ----------- Fixed impossible min_samples_split value (#9520) Commit: 5b7c4ff4346bb3ee454f45c90212d625b2a061ee https://github.com/scikit-learn/scikit-learn/commit/5b7c4ff4346bb3ee454f45c… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- DOC Update what's new Commit: 7fd7b49e3ba2289c493e707e07bdd7a61d2e1cfa https://github.com/scikit-learn/scikit-learn/commit/7fd7b49e3ba2289c493e707… Author: Hanmin Qin <qinhanmin2005(a)sina.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M examples/tree/plot_iris.py Log Message: ----------- DOC Improve the output of example plot_iris.py after matplotlib2.0 (#9541) Commit: 6b4ac29e97abc98ef0a11f0c35a5188aaf9a9f17 https://github.com/scikit-learn/scikit-learn/commit/6b4ac29e97abc98ef0a11f0… Author: Kumar Ashutosh <kumarashutosh.ee(a)gmail.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M doc/developers/utilities.rst M doc/modules/classes.rst M sklearn/cluster/hierarchical.py M sklearn/pipeline.py M sklearn/tests/test_pipeline.py M sklearn/utils/tests/test_validation.py M sklearn/utils/validation.py Log Message: ----------- ENH Ducktyping to allow for alternative Memory implementations (#9584) Commit: eaf107a88f6292b1cae181b39bd5b2a98bbff4cf https://github.com/scikit-learn/scikit-learn/commit/eaf107a88f6292b1cae181b… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- DOC What's new Commit: 187a19b7c93867ecd92d2c9da7d91d2fa2d662ab https://github.com/scikit-learn/scikit-learn/commit/187a19b7c93867ecd92d2c9… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-08-31 (Thu, 31 Aug 2017) Changed paths: M sklearn/tests/test_multioutput.py Log Message: ----------- TST/FIX failure on machines with one CPU (#9544) Commit: 3c29ee93fe72935a3fb32b240fbc13f3f5347fbe https://github.com/scikit-learn/scikit-learn/commit/3c29ee93fe72935a3fb32b2… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-08-31 (Thu, 31 Aug 2017) Changed paths: M sklearn/cluster/hierarchical.py M sklearn/linear_model/randomized_l1.py M sklearn/pipeline.py M sklearn/utils/validation.py Log Message: ----------- DOC improve check_memory related docstrings (#9649) Commit: a098a84fd6e209a41cba962c81ac8f327c426061 https://github.com/scikit-learn/scikit-learn/commit/a098a84fd6e209a41cba962… Author: felix <felix-salfelder(a)users.noreply.github.com> Date: 2017-09-01 (Fri, 01 Sep 2017) Changed paths: M sklearn/decomposition/pca.py Log Message: ----------- DOC fix a glitch in pca docstring (#9664) Commit: 2ce8bfc47511f5551f67ebb21c5ea330d4a2cfeb https://github.com/scikit-learn/scikit-learn/commit/2ce8bfc47511f5551f67ebb… Author: Andreas Mueller <t3kcit(a)gmail.com> Date: 2017-09-03 (Sun, 03 Sep 2017) Changed paths: M examples/ensemble/plot_bias_variance.py M examples/semi_supervised/plot_label_propagation_digits_active_learning.py Log Message: ----------- [MRG] Figure improvements (#9648) * Example plots render poorly in dev * flake8 + bias_variance * title padding * misc ensemble variance plotting don't use rcParams to set size of a single figure, put legend outside of plot * semisupervised plotting fixes use explicit kwargs in subplots_adjust, change hspace, don't change aspect ratio of imshow. Commit: 89f6957dbffebac81ab04a6a4a7fa8adc83c149f https://github.com/scikit-learn/scikit-learn/commit/89f6957dbffebac81ab04a6… Author: pasbi <pasbi(a)users.noreply.github.com> Date: 2017-09-03 (Sun, 03 Sep 2017) Changed paths: M sklearn/decomposition/dict_learning.py M sklearn/decomposition/factor_analysis.py M sklearn/decomposition/fastica_.py M sklearn/decomposition/incremental_pca.py M sklearn/decomposition/nmf.py M sklearn/decomposition/online_lda.py M sklearn/decomposition/pca.py M sklearn/decomposition/sparse_pca.py M sklearn/decomposition/truncated_svd.py M sklearn/manifold/isomap.py M sklearn/manifold/locally_linear.py M sklearn/manifold/mds.py M sklearn/manifold/spectral_embedding_.py M sklearn/manifold/t_sne.py Log Message: ----------- Improve y parameter documentation for transformers (#9578) Commit: 0adff5c95d1ff7896dea9136193997320572762b https://github.com/scikit-learn/scikit-learn/commit/0adff5c95d1ff7896dea913… Author: Rasul Kerimov <rkerimov(a)std.qu.edu.az> Date: 2017-09-03 (Sun, 03 Sep 2017) Changed paths: M sklearn/cluster/affinity_propagation_.py M sklearn/cluster/bicluster.py M sklearn/cluster/birch.py M sklearn/cluster/dbscan_.py M sklearn/cluster/hierarchical.py M sklearn/cluster/k_means_.py M sklearn/cluster/mean_shift_.py M sklearn/cluster/spectral.py Log Message: ----------- DOC y ignored in sklearn.cluster (#9671) Commit: c0e91a9dd245025a29180cb9164be677186d65ab https://github.com/scikit-learn/scikit-learn/commit/c0e91a9dd245025a29180cb… Author: Kumar Ashutosh <kumarashutosh.ee(a)gmail.com> Date: 2017-09-04 (Mon, 04 Sep 2017) Changed paths: M sklearn/ensemble/gradient_boosting.py M sklearn/feature_extraction/text.py M sklearn/learning_curve.py M sklearn/model_selection/_validation.py M sklearn/utils/__init__.py Log Message: ----------- Fixes deprecation warning in numpy-dev build (#9683) Commit: f90ea8230c386b0d743d4c9aa4ab6c22ec545519 https://github.com/scikit-learn/scikit-learn/commit/f90ea8230c386b0d743d4c9… Author: Gael Varoquaux <gael.varoquaux(a)normalesup.org> Date: 2017-09-05 (Tue, 05 Sep 2017) Changed paths: M sklearn/model_selection/_validation.py Log Message: ----------- DOC: fix docstring of learning_curve (#9689) Commit: 55e323794360c4899f1a13c9d31032f9ea84a18a https://github.com/scikit-learn/scikit-learn/commit/55e323794360c4899f1a13c… Author: Sam Steingold <sds(a)gnu.org> Date: 2017-09-12 (Tue, 12 Sep 2017) Changed paths: M sklearn/metrics/classification.py M sklearn/metrics/tests/test_classification.py Log Message: ----------- [MRG+1] avoid integer overflow by using floats for matthews_corrcoef (#9693) * Fix bug#9622: avoid integer overflow by using floats for matthews_corrcoef * matthews_corrcoef: cosmetic change requested by jnothman * Add test_matthews_corrcoef_overflow for Bug#9622 * test_matthews_corrcoef_overflow: clean-up and make deterministic * matthews_corrcoef: pass dtype=np.float64 to sum & trace instead of using astype * test_matthews_corrcoef_overflow: add simple deterministic tests Commit: 752e458cbfb71544c61e5b0d5839a63c402a82f3 https://github.com/scikit-learn/scikit-learn/commit/752e458cbfb71544c61e5b0… Author: Roman Yurchak <rth.yurchak(a)gmail.com> Date: 2017-09-12 (Tue, 12 Sep 2017) Changed paths: M sklearn/feature_extraction/tests/test_feature_hasher.py Log Message: ----------- TST Platform independent hash collision tests in FeatureHasher (#9710) Commit: 7a0b2757cde8ea750be6faa37b829a7bb7cfc2dc https://github.com/scikit-learn/scikit-learn/commit/7a0b2757cde8ea750be6faa… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-09-12 (Tue, 12 Sep 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- Update what's new Commit: e6de8e5aed975013cc8425557990c3d83f153278 https://github.com/scikit-learn/scikit-learn/commit/e6de8e5aed975013cc84255… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M build_tools/travis/test_script.sh A conftest.py A doc/datasets/conftest.py M doc/datasets/mldata.rst M doc/datasets/mldata_fixture.py Log Message: ----------- CI Make it possible to run doctests in .rst files with pytest (#9697) * doc/datasets/conftest.py to implement the equivalent of nose fixtures * add conftest.py in root folder to ensure that sklearn local folder is used rather than the package in site-packages * test doc with pytest in Travis * move custom_data_home definition from nose fixture to .rst file Commit: 7d6f30772cf17364cb41ecf62b76a2624467babf https://github.com/scikit-learn/scikit-learn/commit/7d6f30772cf17364cb41ecf… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- What's new on Nose Commit: 81fb48308ce3f0d0ed43c7eaa6fbe7862800666a https://github.com/scikit-learn/scikit-learn/commit/81fb48308ce3f0d0ed43c7e… Author: Andreas Mueller <t3kcit(a)gmail.com> Date: 2017-09-13 (Wed, 13 Sep 2017) Changed paths: M sklearn/pipeline.py M sklearn/tests/test_pipeline.py Log Message: ----------- [MRG+1] Don't modify steps in {Pipeline,FeatureUnion}.__init__ (#9716) Commit: 5e4196bb8d1b2af3ee14757b645f9e7297c06157 https://github.com/scikit-learn/scikit-learn/commit/5e4196bb8d1b2af3ee14757… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-09-29 (Fri, 29 Sep 2017) Changed paths: M sklearn/model_selection/tests/test_split.py Log Message: ----------- FIX test broken in numpy 1.14.dev due to array str changes Commit: a1e5a77b59c0d32b9450536889d96ee0c63b3262 https://github.com/scikit-learn/scikit-learn/commit/a1e5a77b59c0d32b9450536… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-09-29 (Fri, 29 Sep 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- More verbose output in plot_stock_market for debugging Commit: 8c7f66acf590f10ec40b27d25b57bc573924f3fb https://github.com/scikit-learn/scikit-learn/commit/8c7f66acf590f10ec40b27d… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-09-29 (Fri, 29 Sep 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- DOC/FIX put the sort in the right place Commit: 95621811c8be3907114a448b26d4e3791c1136b4 https://github.com/scikit-learn/scikit-learn/commit/95621811c8be3907114a448… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-09-29 (Fri, 29 Sep 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- Improve error messages in plot_stock_market when Google finance misbehaves. Also few cosmetic changes. Commit: 8b77306395e9ad9d99e33b53693ba8eb396b2d4d https://github.com/scikit-learn/scikit-learn/commit/8b77306395e9ad9d99e33b5… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-09-29 (Fri, 29 Sep 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- Improve error message in plot_stock_market.py Commit: f44a26c5bd98be6936802022fbecddb7c473e535 https://github.com/scikit-learn/scikit-learn/commit/f44a26c5bd98be693680202… Author: Vrishank Bhardwaj <vrishank1997(a)gmail.com> Date: 2017-09-29 (Fri, 29 Sep 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- [MRG+1] Added exchange names to tickers in plot_stock_market.py (#9750) Commit: a7691b0eef6545ef13f1e78959cc62d193f6402a https://github.com/scikit-learn/scikit-learn/commit/a7691b0eef6545ef13f1e78… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-09-29 (Fri, 29 Sep 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- Better treatment of empty data in plot_stock_market.py Also use date rather than datetime because we do not need hour of day Commit: 147679eec796cae6e278a609b12dba558ae48e02 https://github.com/scikit-learn/scikit-learn/commit/147679eec796cae6e278a60… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-09-29 (Fri, 29 Sep 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- Add expected parameter to check min_date, max_date and len_data rather than hardcoding the logic in the quotes_historical_google function. Some minor variable renaming. Commit: 20d686aa6307734cde8167673083e3ded2b55b10 https://github.com/scikit-learn/scikit-learn/commit/20d686aa6307734cde81676… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-09-29 (Fri, 29 Sep 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- FIX max date should use max, not min Commit: d8ec63075f61a12b6b639a390cb3023e2190d956 https://github.com/scikit-learn/scikit-learn/commit/d8ec63075f61a12b6b639a3… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-09-29 (Fri, 29 Sep 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- FIX? Use ISO8601 dates and resolved URL for Google Finance Commit: bc3797f5196490127d10249217ffd0ba62ba560c https://github.com/scikit-learn/scikit-learn/commit/bc3797f5196490127d10249… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-09-29 (Fri, 29 Sep 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- plot_stock_market.py checks are based on dates rather than on hard-coded values Commit: fecc0c4b788b4b5455a445f1c9433d22ceba03c7 https://github.com/scikit-learn/scikit-learn/commit/fecc0c4b788b4b5455a445f… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-09-29 (Fri, 29 Sep 2017) Changed paths: M build_tools/circle/build_doc.sh M build_tools/travis/install.sh Log Message: ----------- FIX do not update conda as a temporary work-around for conda issue https://github.com/conda/conda/issues/6030 Commit: c59af715a9142d10f151f54b096e5b9a0dff6437 https://github.com/scikit-learn/scikit-learn/commit/c59af715a9142d10f151f54… Author: oliblum90 <o.blum90(a)gmail.com> Date: 2017-10-03 (Tue, 03 Oct 2017) Changed paths: M sklearn/manifold/t_sne.py M sklearn/manifold/tests/test_t_sne.py Log Message: ----------- [MRG + 1] enable metric = 'cosine' for tsne computation (#9623) Commit: ab33915a794f5448c5004e810acf9be1f914b5c1 https://github.com/scikit-learn/scikit-learn/commit/ab33915a794f5448c5004e8… Author: Joan Massich <mailsik(a)gmail.com> Date: 2017-10-03 (Tue, 03 Oct 2017) Changed paths: M sklearn/datasets/california_housing.py M sklearn/datasets/rcv1.py M sklearn/datasets/species_distributions.py Log Message: ----------- FIX PermissionError in datasets fetchers on Windows (#9847) Commit: 052be48835a070b00fd8d59eb36a075cca846da4 https://github.com/scikit-learn/scikit-learn/commit/052be48835a070b00fd8d59… Author: Vrishank Bhardwaj <vrishank1997(a)gmail.com> Date: 2017-10-03 (Tue, 03 Oct 2017) Changed paths: M sklearn/linear_model/stochastic_gradient.py Log Message: ----------- ENH avoid FutureWarning in BaseSGD.set_params (#9802) Commit: b5a956a83b5ce33caf4fb9ca3d19958ccb358243 https://github.com/scikit-learn/scikit-learn/commit/b5a956a83b5ce33caf4fb9c… Author: Anthony Gitter <agitter(a)users.noreply.github.com> Date: 2017-10-03 (Tue, 03 Oct 2017) Changed paths: M doc/modules/model_evaluation.rst M examples/model_selection/plot_precision_recall.py M sklearn/metrics/ranking.py Log Message: ----------- DOC Add average precision definitions and cross references (#9583) Commit: d8dbc142f3c984f1c9bf219eb8d26b58eba6ec4b https://github.com/scikit-learn/scikit-learn/commit/d8dbc142f3c984f1c9bf219… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-10-03 (Tue, 03 Oct 2017) Changed paths: M examples/applications/plot_out_of_core_classification.py Log Message: ----------- Fix plot_out_of_core_classification.py. (#9815) Starting from empty ~/scikit_learn_data got AttributeError: module 'sklearn.externals.six.moves.urllib_request' has no attribute 'urlretrieve'. Commit: caf8c9b780f22fe3d7d64c1e712b610a77a17181 https://github.com/scikit-learn/scikit-learn/commit/caf8c9b780f22fe3d7d64c1… Author: Olivier Grisel <olivier.grisel(a)ensta.org> Date: 2017-10-03 (Tue, 03 Oct 2017) Changed paths: M sklearn/gaussian_process/gaussian_process.py Log Message: ----------- FIX fmin_cobyla: iprint is deprecated, use disp (#9793) Commit: 8d85a998989151d9e9e0e3a02e0263c528b1f2f2 https://github.com/scikit-learn/scikit-learn/commit/8d85a998989151d9e9e0e3a… Author: Hanmin Qin <qinhanmin2005(a)sina.com> Date: 2017-10-03 (Tue, 03 Oct 2017) Changed paths: M examples/semi_supervised/plot_label_propagation_structure.py Log Message: ----------- hange alpha in plot_label_propagation_structure.py (#9788) Commit: 4afe138caa9174ad2438e277181c7397611597d8 https://github.com/scikit-learn/scikit-learn/commit/4afe138caa9174ad2438e27… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-03 (Tue, 03 Oct 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- More verbose output in plot_stock_market for debugging Commit: 4bbd8b3722613b083f045fc6bb1d8b78aab009cd https://github.com/scikit-learn/scikit-learn/commit/4bbd8b3722613b083f045fc… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-03 (Tue, 03 Oct 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- DOC/FIX put the sort in the right place Commit: c4246abc3f1c659e3892cb96b9e149dca96850a7 https://github.com/scikit-learn/scikit-learn/commit/c4246abc3f1c659e3892cb9… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-10-03 (Tue, 03 Oct 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- Improve error messages in plot_stock_market when Google finance misbehaves. Also few cosmetic changes. Commit: 9d62a138a21c8e64c9d173e32b42e76db0230a97 https://github.com/scikit-learn/scikit-learn/commit/9d62a138a21c8e64c9d173e… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-10-03 (Tue, 03 Oct 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- Improve error message in plot_stock_market.py Commit: 9349ea9fb3239ce5701863ba917b84f8e71fffc8 https://github.com/scikit-learn/scikit-learn/commit/9349ea9fb3239ce5701863b… Author: Vrishank Bhardwaj <vrishank1997(a)gmail.com> Date: 2017-10-03 (Tue, 03 Oct 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- [MRG+1] Added exchange names to tickers in plot_stock_market.py (#9750) Commit: 3da02fa003b485f318ee7408b8a299e1082e5bf1 https://github.com/scikit-learn/scikit-learn/commit/3da02fa003b485f318ee740… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-10-03 (Tue, 03 Oct 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- Better treatment of empty data in plot_stock_market.py Also use date rather than datetime because we do not need hour of day Commit: 3e8c8e0b43df973d222176259445c4f11bfd3b32 https://github.com/scikit-learn/scikit-learn/commit/3e8c8e0b43df973d2221762… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-10-03 (Tue, 03 Oct 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- Add expected parameter to check min_date, max_date and len_data rather than hardcoding the logic in the quotes_historical_google function. Some minor variable renaming. Commit: 57f7452264ec50237b2a81ed853180c80b10192c https://github.com/scikit-learn/scikit-learn/commit/57f7452264ec50237b2a81e… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-03 (Tue, 03 Oct 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- FIX max date should use max, not min Commit: 9589c28a5112165ef44c775a95a52c9cbdfb6648 https://github.com/scikit-learn/scikit-learn/commit/9589c28a5112165ef44c775… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-03 (Tue, 03 Oct 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- FIX? 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(#9897) Commit: 42844953bb2adc431ee63d97a2abb65eedfc0916 https://github.com/scikit-learn/scikit-learn/commit/42844953bb2adc431ee63d9… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-10 (Tue, 10 Oct 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- DOC update what's new Commit: 5cc874b1df5e38d9575118d2eb3ba6e3798f11e8 https://github.com/scikit-learn/scikit-learn/commit/5cc874b1df5e38d9575118d… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-10 (Tue, 10 Oct 2017) Changed paths: M doc/index.rst Log Message: ----------- DOC Add likely release month to news Commit: 722dea5e62df37325e91aebe9b02860f52f36d98 https://github.com/scikit-learn/scikit-learn/commit/722dea5e62df37325e91aeb… Author: Andreas Mueller <t3kcit(a)gmail.com> Date: 2017-10-16 (Mon, 16 Oct 2017) Changed paths: M sklearn/model_selection/_split.py M sklearn/model_selection/tests/test_split.py Log Message: ----------- [MRG+1] check that splitters handle 2d y and give reasonable errors on multilabel y (#9744) Commit: 58b90e5964a7050977060305b15ff3aa3f5b8ad4 https://github.com/scikit-learn/scikit-learn/commit/58b90e5964a705097706030… Author: Nathaniel Saul <nat(a)saulgill.com> Date: 2017-10-16 (Mon, 16 Oct 2017) Changed paths: M examples/svm/plot_separating_hyperplane_unbalanced.py Log Message: ----------- DOC show plot and fix comments (#9925) Commit: 4dc9ddff331ed632d3546055ccb936f10e4ea516 https://github.com/scikit-learn/scikit-learn/commit/4dc9ddff331ed632d354605… Author: Kumar Ashutosh <kumarashutosh.ee(a)gmail.com> Date: 2017-10-16 (Mon, 16 Oct 2017) Changed paths: M doc/modules/gaussian_process.rst M sklearn/gaussian_process/correlation_models.py M sklearn/gaussian_process/regression_models.py Log Message: ----------- [MRG] Deprecates gaussian process regression_models and correlation_models. (#9717) Forgotten from earlier deprecation Commit: 6836bfd7f139fe5d74fc91c34b3d6d58a0d86de2 https://github.com/scikit-learn/scikit-learn/commit/6836bfd7f139fe5d74fc91c… Author: Vrishank Bhardwaj <vrishank1997(a)gmail.com> Date: 2017-10-16 (Mon, 16 Oct 2017) Changed paths: M examples/cluster/plot_kmeans_stability_low_dim_dense.py M sklearn/cluster/_k_means.pyx M sklearn/cluster/k_means_.py Log Message: ----------- [MRG+1] Update docstrings of KMeans.inertia_ (#9920) [MRG+2] Update docstrings of KMeans.inertia_ Commit: ba4f1b5ada50dcc7fb365a3f2b6acd3972d3253c https://github.com/scikit-learn/scikit-learn/commit/ba4f1b5ada50dcc7fb365a3… Author: Andreas Mueller <t3kcit(a)gmail.com> Date: 2017-10-17 (Tue, 17 Oct 2017) Changed paths: M doc/developers/contributing.rst Log Message: ----------- DOC add review guidelines, make other ways to contribute more prominent and rephrase (#9745) Commit: 1edc3857bffefaf60d7c46b27dbba8151d6757e6 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7bcf5a1e98f337316c4ad63dd8590326ebae21e0 https://github.com/scikit-learn/scikit-learn/commit/7bcf5a1e98f337316c4ad63… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-17 (Tue, 17 Oct 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- DOC what's new Commit: 5f1bbf8b89e4f0611b2278803044f60a606b2fca https://github.com/scikit-learn/scikit-learn/commit/5f1bbf8b89e4f0611b22788… Author: Didi Bar-Zev <didi(a)hiredscore.com> Date: 2017-10-18 (Wed, 18 Oct 2017) Changed paths: M sklearn/multioutput.py Log Message: ----------- DOC fix inconsistency with current implementation (#9946) Commit: 754f73a5962bc9bfbc94b5450347e19836435e6f https://github.com/scikit-learn/scikit-learn/commit/754f73a5962bc9bfbc94b54… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-18 (Wed, 18 Oct 2017) Changed paths: M sklearn/utils/deprecation.py M sklearn/utils/tests/test_deprecation.py Log Message: ----------- Add DeprecationDict for #9677 Commit: 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<joel.nothman(a)gmail.com> Date: 2017-10-18 (Wed, 18 Oct 2017) Changed paths: M sklearn/gaussian_process/correlation_models.py M sklearn/gaussian_process/regression_models.py Log Message: ----------- DOC Correct deprecation version Commit: 23e1bea3bb890c6bf6da87bbacb1c5c3059787bf https://github.com/scikit-learn/scikit-learn/commit/23e1bea3bb890c6bf6da87b… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-18 (Wed, 18 Oct 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- DOC what's new Commit: 1b7d370de6d00c314abb16d6169d9ae552143992 https://github.com/scikit-learn/scikit-learn/commit/1b7d370de6d00c314abb16d… Author: Andreas Mueller <t3kcit(a)gmail.com> Date: 2017-10-19 (Thu, 19 Oct 2017) Changed paths: M sklearn/base.py M sklearn/tests/test_base.py M sklearn/tests/test_pipeline.py Log Message: ----------- FIX _BaseComposition._set_params with nested parameters (#9945) Commit: bf1dbe7ea526c006cbe8358f66f6b42930b5df93 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ndcg_score and dcg_score (#9932) Commit: 2a816fbd8bf1ca74fabfac5f6ba5ad762182875c https://github.com/scikit-learn/scikit-learn/commit/2a816fbd8bf1ca74fabfac5… Author: Hanmin Qin <qinhanmin2005(a)sina.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M doc/modules/classes.rst Log Message: ----------- DOC Add missing class (#9955) Commit: ad16bb45c666945563a74b71025e3742d57c463f https://github.com/scikit-learn/scikit-learn/commit/ad16bb45c666945563a74b7… Author: Reiichiro Nakano <reiichiro.s.nakano(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/model_selection/_validation.py M sklearn/model_selection/tests/test_validation.py Log Message: ----------- [MRG+1] Fix cross_val_predict behavior for binary classification in decision_function (Fixes #9589) (#9593) * fix cross_val_predict for binary classification in decision_function * Add unit tests * Add unit tests * Add unit tests * better fix * fix conflict * fix broken * only calculate n_classes if one of 'decision_function', 'predict_proba', 'predict_log_proba' * add test for SVC ovo in cross_val_predict * flake8 fix * fix case of ovo and imbalanced folds for binary classification * change assert_raises to assert_raise_message for ovo case * fix flake8 linetoo long * add comments and clearer tests * improve comments and error message for OvO * fix .format error with L * use assert_raises_regex for better error message * raise error in decision_function special cases. change predict_log_proba missing classes to minimum numpy value * fix broken tests due to special cases of decision_function * add modified test for decision_function behavior that does not trigger edge cases * fix typos * fix typos * escape regex . * escape regex . * address comments. one unaddressed comment * simplify code * flake * wrong classes range * address comments. adjust error message * add warning * change warning to runtimewarning * add test for the warning * Use assert_warns_message rather than assert_warns Other minor fixes * Note on class-absent replacement values * Improve error message Commit: 6bb4685f0fe40a74668870310c6eed784df92c37 https://github.com/scikit-learn/scikit-learn/commit/6bb4685f0fe40a746688703… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M CONTRIBUTING.md M doc/developers/contributing.rst Log Message: ----------- [MRG] DOC good first issue and help wanted labels (#9950) Commit: ca6b346d6915656030f97f327e2ef42d1dbca47d https://github.com/scikit-learn/scikit-learn/commit/ca6b346d6915656030f97f3… Author: Hanmin Qin <qinhanmin2005(a)sina.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M CONTRIBUTING.md M PULL_REQUEST_TEMPLATE.md M doc/developers/contributing.rst Log Message: ----------- DOC Encourage contributors to use keywords to close issue automatically (#9954) Commit: 59adbbbdc87d7750f257527172f1e583d4214b24 https://github.com/scikit-learn/scikit-learn/commit/59adbbbdc87d7750f257527… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/model_selection/tests/test_validation.py Log Message: ----------- Duplicate import Commit: 71841a91d929ede6043762e92ddd58e883068ed2 https://github.com/scikit-learn/scikit-learn/commit/71841a91d929ede6043762e… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- Add Reiichiro Nakano to contribs for 0.19.1 Commit: 904b560ea8f6e81e074d863649c16e868b4b38c5 https://github.com/scikit-learn/scikit-learn/commit/904b560ea8f6e81e074d863… Author: Ryan <ryantlee9(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/datasets/california_housing.py Log Message: ----------- Update StatLib database URL (#9550) Root URL responds with: `mysql://��:@localhost/nuke failed to connectAccess denied for user '��'@'localhost' (using password: YES)` Commit: 59e59484c2ba5bd797e3370b34d025e35511fe45 https://github.com/scikit-learn/scikit-learn/commit/59e59484c2ba5bd797e3370… Author: Anthony Gitter <agitter(a)users.noreply.github.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/metrics/ranking.py Log Message: ----------- Typo (#9571) Commit: c2cb1a3a9880e3c03d19f7240613c5ee9ccdd00b https://github.com/scikit-learn/scikit-learn/commit/c2cb1a3a9880e3c03d19f72… Author: Taehoon Lee <me(a)taehoonlee.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/linear_model/sag_fast.pyx M sklearn/model_selection/tests/test_search.py M sklearn/neighbors/quad_tree.pyx Log Message: ----------- DOC Fix typos (#9577) Commit: 42aeb99e407ed5656364632dfd9724a7937a7593 https://github.com/scikit-learn/scikit-learn/commit/42aeb99e407ed5656364632… Author: Vadim Markovtsev <gmarkhor(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M .mailmap Log Message: ----------- Fix mailmap format (#9620) This \< breaks some mailmap parsers and is apparently inserted by mistake Commit: 8f7f8f2fbf258f3f2316ed9c3ffc9fdc684f887d https://github.com/scikit-learn/scikit-learn/commit/8f7f8f2fbf258f3f2316ed9… Author: Shahebaz <shahebaz13(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M doc/modules/cross_validation.rst Log Message: ----------- [MRG+1] DOC fix headers level in cross_validation.rst (#9679) Commit: d835573fe70d9e52945af080a8d60e8632d69c67 https://github.com/scikit-learn/scikit-learn/commit/d835573fe70d9e52945af08… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/pipeline.py Log Message: ----------- MAINT comment on apparent inconsistency Commit: 33128c831dbb06a014abb98e165f57e1ff99f585 https://github.com/scikit-learn/scikit-learn/commit/33128c831dbb06a014abb98… Author: brett koonce <koonce(a)hello.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M doc/datasets/kddcup99.rst M doc/datasets/labeled_faces.rst M doc/modules/calibration.rst M doc/modules/gaussian_process.rst M doc/modules/manifold.rst M doc/modules/multiclass.rst M doc/modules/neighbors.rst M doc/modules/neural_networks_unsupervised.rst M doc/modules/pipeline.rst M doc/modules/preprocessing.rst M doc/modules/scaling_strategies.rst M doc/modules/svm.rst M doc/themes/scikit-learn/static/ML_MAPS_README.rst M doc/tutorial/statistical_inference/unsupervised_learning.rst M doc/tutorial/text_analytics/working_with_text_data.rst Log Message: ----------- various minor spelling tweaks (#9783) Commit: 4620829731314838bbcdee6423950b3277379e4b https://github.com/scikit-learn/scikit-learn/commit/4620829731314838bbcdee6… Author: Ekaterina Tuzova <ktisha(a)users.noreply.github.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/preprocessing/imputation.py Log Message: ----------- DOC: fix docstring of Imputer.fit (#9769) Commit: ed5511cc1603fe07af467dcd9e2d181ff71c5b33 https://github.com/scikit-learn/scikit-learn/commit/ed5511cc1603fe07af467dc… Author: Kye Taylor <taylorkm(a)users.noreply.github.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/model_selection/_split.py Log Message: ----------- [MRG+1] Fix #9743: Adding parameter information to docstring. (#9757) * Adding parameter information to docstring. * Removing trailing whitespace from lines. * Adding details of parameter to formal Parameters section. * Shortened lines to meet requirements. Commit: a11294a2806c83d0dcb5f32688f678e461075d0c https://github.com/scikit-learn/scikit-learn/commit/a11294a2806c83d0dcb5f32… Author: Albert Thomas <albertthomas88(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/neighbors/lof.py Log Message: ----------- FIX docstring of negative_outlier_factor_ in LOF (#9809) Commit: 9c89f2fd15da111556bdc51c81b21ad3906ce4b1 https://github.com/scikit-learn/scikit-learn/commit/9c89f2fd15da111556bdc51… Author: MarsGuy <kkiranraj2k(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/neighbors/regression.py Log Message: ----------- DOC Removed a duplicate occurrence of a word in 'sklearn.neighbors.KNeighborsRegressor' docs (#9862) * Removed a duplicate occurrence of the word 'but' from the 'Warning' section. Commit: bd326a94616d3768ed40fcc21fb77f41adbe45f3 https://github.com/scikit-learn/scikit-learn/commit/bd326a94616d3768ed40fcc… Author: jschendel <jschendel(a)users.noreply.github.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M doc/developers/contributing.rst Log Message: ----------- DOC: Use setattr(self, ...) instead of self.setattr(...) (#9866) Commit: 3c1e23a295d93b39103f7a825d8e5915b6e8df56 https://github.com/scikit-learn/scikit-learn/commit/3c1e23a295d93b39103f7a8… Author: Andreas Mueller <t3kcit(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M CONTRIBUTING.md M doc/faq.rst M doc/sphinxext/sphinx_issues.py M doc/themes/scikit-learn/layout.html M sklearn/linear_model/tests/test_bayes.py Log Message: ----------- [MRG+1] Fix typos in documentation (#9878) * Fix grammatical error in * Correct capitalization of "GitHub" Used command `find . -type f -exec sed -i 's/Github/GitHub/g' {} \;` (h/t: https://stackoverflow.com/a/15402972) # Conflicts: # doc/developers/contributing.rst Commit: dacf9e3f33164050b21b886785eef725885e8ae5 https://github.com/scikit-learn/scikit-learn/commit/dacf9e3f33164050b21b886… Author: kyledrogo <GKjohns(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M doc/modules/covariance.rst M sklearn/covariance/shrunk_covariance_.py Log Message: ----------- [MRG+1] Ledoit-Wolf behavior explanation (#9500) * DOC add explaination of unexpected behavior to ledoit-wolf functions and class * DOC add explaination of unexpected ledoit-wolf behavior to module documentation * fix line that's longer than 80 chars, pep8 issue * fix documentation changes to Ledoit_Wolf behavior explaination * change bahavior explanation to a note in documentation * remove unexpected behavior explanation from docstrings * fix broken links in docs Commit: 95cc1afc2345cc0eda48c5af4cf164b7d80167e4 https://github.com/scikit-learn/scikit-learn/commit/95cc1afc2345cc0eda48c5a… Author: Hossein Pourbozorg <hussein.pourbozorg(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/decomposition/online_lda.py Log Message: ----------- DOC fix a typo (#9892) Commit: 6a042a76a16d5f2347922424e25ee2c7dc3e001b https://github.com/scikit-learn/scikit-learn/commit/6a042a76a16d5f234792242… Author: Kyeongpil Kang <rudvlf0413(a)korea.ac.kr> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M doc/modules/ensemble.rst Log Message: ----------- [MRG+1] DOC fix sign in GBRT mathematical formulation (#9885) Commit: 5f934e24b7c11ee21482e864e81c7bf8418e5438 https://github.com/scikit-learn/scikit-learn/commit/5f934e24b7c11ee21482e86… Author: Kyeongpil Kang <rudvlf0413(a)korea.ac.kr> Date: 2017-10-21 (Sat, 21 Oct 2017) Changed paths: M doc/modules/ensemble.rst Log Message: ----------- [MRG+1] DOC fix sign in GBRT mathematical formulation (#9885) Commit: 72837915093a5a5b648ea784dc628b86d9c70199 https://github.com/scikit-learn/scikit-learn/commit/72837915093a5a5b648ea78… Author: Sam Radhakrishnan <sk09idm(a)gmail.com> Date: 2017-10-21 (Sat, 21 Oct 2017) Changed paths: M sklearn/linear_model/logistic.py Log Message: ----------- Fix LogisticRegressionCV default solver value in docstring (#9962) Commit: ef2408c58801232faf136c6cf38c767517bbdc4e https://github.com/scikit-learn/scikit-learn/commit/ef2408c58801232faf136c6… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-21 (Sat, 21 Oct 2017) Changed paths: M .mailmap M CONTRIBUTING.md M doc/datasets/kddcup99.rst M doc/datasets/labeled_faces.rst M doc/developers/contributing.rst M doc/faq.rst M doc/modules/calibration.rst M doc/modules/covariance.rst M doc/modules/cross_validation.rst M doc/modules/gaussian_process.rst M doc/modules/manifold.rst M doc/modules/multiclass.rst M doc/modules/neighbors.rst M doc/modules/neural_networks_unsupervised.rst M doc/modules/pipeline.rst M doc/modules/preprocessing.rst M doc/modules/scaling_strategies.rst M doc/modules/svm.rst M doc/sphinxext/sphinx_issues.py M doc/themes/scikit-learn/layout.html M doc/themes/scikit-learn/static/ML_MAPS_README.rst M doc/tutorial/statistical_inference/unsupervised_learning.rst M doc/tutorial/text_analytics/working_with_text_data.rst M sklearn/covariance/shrunk_covariance_.py M sklearn/datasets/california_housing.py M sklearn/decomposition/online_lda.py M sklearn/linear_model/sag_fast.pyx M sklearn/linear_model/tests/test_bayes.py M sklearn/metrics/ranking.py M sklearn/model_selection/_split.py M sklearn/model_selection/tests/test_search.py M sklearn/neighbors/lof.py M sklearn/neighbors/quad_tree.pyx M sklearn/neighbors/regression.py M sklearn/pipeline.py M sklearn/preprocessing/imputation.py Log Message: ----------- Merge branch 'for-0.19.1' of github.com:jnothman/scikit-learn into for-0.19.1 Commit: 3700b9606fb8672eb6db48881bcebb67ea50b0ff https://github.com/scikit-learn/scikit-learn/commit/3700b9606fb8672eb6db488… Author: nielsenmarkus11 <nielsenmarkus11(a)users.noreply.github.com> Date: 2017-10-21 (Sat, 21 Oct 2017) Changed paths: M sklearn/metrics/ranking.py M sklearn/metrics/tests/test_ranking.py M sklearn/utils/multiclass.py M sklearn/utils/tests/test_multiclass.py Log Message: ----------- [MRG+1] Raise error when SparseSeries is passed into classification metrics (#7373) * Raise error when SparseSeries is passed into roc_curve * Changed "y_true" in second if block to "y_score" * Remove code to import pandas and add sparseseries check to 'type_of_target' function. Finally, add 'type_of_target' call to _binary_clf_curve * Remove pandas import and old comparison in roc_curve. * Add test for 'type_of_target' function * Add white space after commas * Correct other white space issues * Move type_of_target test into try clause, remove test_precision_recall_curve_pos_label since as multiclass it doesn't make sense * Add test_precision_recall_curve_pos_label back in and also add test_binary_clf_curve to test new logic in _binary_clf_curve function * Correct syntax and formatting. * Remove trailing white space * Correct validation logic * Update test_multiclass.py per @jnothman 's request. * Import SkipTest function. * Remove extra white space from line 303 Commit: 0e1d261cb2c4c9906aea91d5586d3536c37dfc52 https://github.com/scikit-learn/scikit-learn/commit/0e1d261cb2c4c9906aea91d… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-21 (Sat, 21 Oct 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- Name in what's new Commit: b661a9c81930429cba4a56af291ce2bf8c59f8c9 https://github.com/scikit-learn/scikit-learn/commit/b661a9c81930429cba4a56a… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-21 (Sat, 21 Oct 2017) Changed paths: M sklearn/feature_selection/tests/test_from_model.py Log Message: ----------- TST Improve SelectFromModel tests (#9733) Should fix one of the issues in #9393 Compare: https://github.com/scikit-learn/scikit-learn/compare/a552a13f00c3...b661a9c…

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[scikit-learn/scikit-learn] 759f46: bump version, added whatsnew
by GitHub Oct. 21, 2017

Oct. 21, 2017

Branch: refs/tags/0.18.2 Home: https://github.com/scikit-learn/scikit-learn Commit: 759f4637f9f9471cf4218b9dffc00b464790485b https://github.com/scikit-learn/scikit-learn/commit/759f4637f9f9471cf4218b9… Author: Andreas Mueller <t3kcit(a)gmail.com> Date: 2017-06-19 (Mon, 19 Jun 2017) Changed paths: M doc/whats_new.rst M sklearn/__init__.py Log Message: ----------- bump version, added whatsnew

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[scikit-learn/scikit-learn] d5b69d: FIX force pipeline steps to be list not a tuple (#...
by GitHub Oct. 21, 2017

Oct. 21, 2017

Branch: refs/tags/0.19.1 Home: https://github.com/scikit-learn/scikit-learn Commit: d5b69d3c87b335fd3e8ece60e0af47144dc2ca9d https://github.com/scikit-learn/scikit-learn/commit/d5b69d3c87b335fd3e8ece6… Author: Joris Van den Bossche <jorisvandenbossche(a)gmail.com> Date: 2017-08-23 (Wed, 23 Aug 2017) Changed paths: M sklearn/pipeline.py M sklearn/tests/test_pipeline.py M sklearn/utils/metaestimators.py Log Message: ----------- FIX force pipeline steps to be list not a tuple (#9604) Commit: 85e1575e5f82c6ceb758dc506e63be239668c0e7 https://github.com/scikit-learn/scikit-learn/commit/85e1575e5f82c6ceb758dc5… Author: Rasul Kerimov <rkerimov(a)std.qu.edu.az> Date: 2017-08-23 (Wed, 23 Aug 2017) Changed paths: M sklearn/model_selection/_validation.py M sklearn/model_selection/tests/test_validation.py Log Message: ----------- [MRG+1] Resolve the problem with cross_val_predict(method=) when passing X or y as list (#9600) * issue 9592 * issue resolve * resolve issue * review * Delete sample.py * review Commit: bc97fb4b7ab198481653bba4dcc71e9ca39ad275 https://github.com/scikit-learn/scikit-learn/commit/bc97fb4b7ab198481653bba… Author: Andreas Mueller <t3kcit(a)gmail.com> Date: 2017-08-23 (Wed, 23 Aug 2017) Changed paths: M doc/modules/kernel_approximation.rst M doc/modules/sgd.rst M sklearn/linear_model/passive_aggressive.py M sklearn/linear_model/stochastic_gradient.py M sklearn/linear_model/tests/test_sgd.py Log Message: ----------- [MRG+1] FIX n_iter -> max_iter conversion in SGDClassifier (#9558) * move n_iter -> max_iter conversion and warning into _check_params in SGDClassifier for proper deprecation. * move validate_params so we have self._max_iter in _fit * validate params in init because the tests wants me to * better check for input validation * fix deprecation tests to call _validate_params * fix parameter validation in PA classifier * fix max_iter in doctests * pep8 /doctest whitespace * more doctests * maybe I'll find them all.... Commit: 79471138efc1d8135f35c40c1d575805a0c04fd6 https://github.com/scikit-learn/scikit-learn/commit/79471138efc1d8135f35c40… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-08-23 (Wed, 23 Aug 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- DOC what's new so far Commit: 506380b9ccf97bbd923b78a386f0ac7ca7dd75cc https://github.com/scikit-learn/scikit-learn/commit/506380b9ccf97bbd923b78a… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-08-23 (Wed, 23 Aug 2017) Changed paths: M sklearn/__init__.py Log Message: ----------- Update version Commit: f3412f80637c6ece5c810cdc958b132cef6f491b https://github.com/scikit-learn/scikit-learn/commit/f3412f80637c6ece5c810cd… Author: James Bourbeau <jrbourbeau(a)users.noreply.github.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M sklearn/model_selection/_validation.py M sklearn/model_selection/tests/test_validation.py Log Message: ----------- [MRG + 1] Removes estimator method check in cross_val_predict before fitting (#9641) * Removes check in cross_val_predict that checks estimator method before fitting * Adds regression test for issue #9639 Commit: 0b4c7bec26360d17d95feb8bb23546de42a713c9 https://github.com/scikit-learn/scikit-learn/commit/0b4c7bec26360d17d95feb8… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M examples/classification/plot_classifier_comparison.py Log Message: ----------- Remove inappropriate warm_start (#9638) Commit: 38f09969962cfcc6f6df57f03a83515883ac10eb https://github.com/scikit-learn/scikit-learn/commit/38f09969962cfcc6f6df57f… Author: Ben Lawson <balawson(a)bu.edu> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M doc/modules/clustering.rst Log Message: ----------- update dead link to pyamg (#9640) pyamg.org has moved to github Commit: aa5fe992e1bcf216e7e56a23ad7944247a07b06c https://github.com/scikit-learn/scikit-learn/commit/aa5fe992e1bcf216e7e56a2… Author: James Bourbeau <jrbourbeau(a)users.noreply.github.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M sklearn/model_selection/_validation.py Log Message: ----------- Modifies model_selection.cross_validate docstring (#9534) - Fixes rendering of docstring examples - Instead of importing cross_val_score in example, cross_validate is imported Commit: f7706a1f5fc5a9b95a28292361592fa0b361c3f2 https://github.com/scikit-learn/scikit-learn/commit/f7706a1f5fc5a9b95a28292… Author: Hanmin Qin <qinhanmin2005(a)sina.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M sklearn/model_selection/_validation.py Log Message: ----------- [MRG] DOC correct the link in model_selection.cross_validate (#9537) Commit: 0329c493b5fc09b6747f52bca3915dcf1edcf444 https://github.com/scikit-learn/scikit-learn/commit/0329c493b5fc09b6747f52b… Author: Nagarjuna Kumar <nagarjuna.412(a)gmail.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M doc/modules/feature_extraction.rst Log Message: ----------- Fixed typos in tf-idf term weighting section (#9547) Commit: 88c719c3bf9572af09b785071f1435bb2306a414 https://github.com/scikit-learn/scikit-learn/commit/88c719c3bf9572af09b7850… Author: diegodlh <delahera(a)gmail.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M doc/modules/ensemble.rst Log Message: ----------- Fixed impossible min_samples_split value (#9520) Commit: 5b7c4ff4346bb3ee454f45c90212d625b2a061ee https://github.com/scikit-learn/scikit-learn/commit/5b7c4ff4346bb3ee454f45c… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- DOC Update what's new Commit: 7fd7b49e3ba2289c493e707e07bdd7a61d2e1cfa https://github.com/scikit-learn/scikit-learn/commit/7fd7b49e3ba2289c493e707… Author: Hanmin Qin <qinhanmin2005(a)sina.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M examples/tree/plot_iris.py Log Message: ----------- DOC Improve the output of example plot_iris.py after matplotlib2.0 (#9541) Commit: 6b4ac29e97abc98ef0a11f0c35a5188aaf9a9f17 https://github.com/scikit-learn/scikit-learn/commit/6b4ac29e97abc98ef0a11f0… Author: Kumar Ashutosh <kumarashutosh.ee(a)gmail.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M doc/developers/utilities.rst M doc/modules/classes.rst M sklearn/cluster/hierarchical.py M sklearn/pipeline.py M sklearn/tests/test_pipeline.py M sklearn/utils/tests/test_validation.py M sklearn/utils/validation.py Log Message: ----------- ENH Ducktyping to allow for alternative Memory implementations (#9584) Commit: eaf107a88f6292b1cae181b39bd5b2a98bbff4cf https://github.com/scikit-learn/scikit-learn/commit/eaf107a88f6292b1cae181b… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-08-30 (Wed, 30 Aug 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- DOC What's new Commit: 187a19b7c93867ecd92d2c9da7d91d2fa2d662ab https://github.com/scikit-learn/scikit-learn/commit/187a19b7c93867ecd92d2c9… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-08-31 (Thu, 31 Aug 2017) Changed paths: M sklearn/tests/test_multioutput.py Log Message: ----------- TST/FIX failure on machines with one CPU (#9544) Commit: 3c29ee93fe72935a3fb32b240fbc13f3f5347fbe https://github.com/scikit-learn/scikit-learn/commit/3c29ee93fe72935a3fb32b2… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-08-31 (Thu, 31 Aug 2017) Changed paths: M sklearn/cluster/hierarchical.py M sklearn/linear_model/randomized_l1.py M sklearn/pipeline.py M sklearn/utils/validation.py Log Message: ----------- DOC improve check_memory related docstrings (#9649) Commit: a098a84fd6e209a41cba962c81ac8f327c426061 https://github.com/scikit-learn/scikit-learn/commit/a098a84fd6e209a41cba962… Author: felix <felix-salfelder(a)users.noreply.github.com> Date: 2017-09-01 (Fri, 01 Sep 2017) Changed paths: M sklearn/decomposition/pca.py Log Message: ----------- DOC fix a glitch in pca docstring (#9664) Commit: 2ce8bfc47511f5551f67ebb21c5ea330d4a2cfeb https://github.com/scikit-learn/scikit-learn/commit/2ce8bfc47511f5551f67ebb… Author: Andreas Mueller <t3kcit(a)gmail.com> Date: 2017-09-03 (Sun, 03 Sep 2017) Changed paths: M examples/ensemble/plot_bias_variance.py M examples/semi_supervised/plot_label_propagation_digits_active_learning.py Log Message: ----------- [MRG] Figure improvements (#9648) * Example plots render poorly in dev * flake8 + bias_variance * title padding * misc ensemble variance plotting don't use rcParams to set size of a single figure, put legend outside of plot * semisupervised plotting fixes use explicit kwargs in subplots_adjust, change hspace, don't change aspect ratio of imshow. 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Some minor variable renaming. Commit: 20d686aa6307734cde8167673083e3ded2b55b10 https://github.com/scikit-learn/scikit-learn/commit/20d686aa6307734cde81676… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-09-29 (Fri, 29 Sep 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- FIX max date should use max, not min Commit: d8ec63075f61a12b6b639a390cb3023e2190d956 https://github.com/scikit-learn/scikit-learn/commit/d8ec63075f61a12b6b639a3… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-09-29 (Fri, 29 Sep 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- FIX? 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(#9815) Starting from empty ~/scikit_learn_data got AttributeError: module 'sklearn.externals.six.moves.urllib_request' has no attribute 'urlretrieve'. 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(#9897) Commit: 42844953bb2adc431ee63d97a2abb65eedfc0916 https://github.com/scikit-learn/scikit-learn/commit/42844953bb2adc431ee63d9… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-10 (Tue, 10 Oct 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- DOC update what's new Commit: 5cc874b1df5e38d9575118d2eb3ba6e3798f11e8 https://github.com/scikit-learn/scikit-learn/commit/5cc874b1df5e38d9575118d… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-10 (Tue, 10 Oct 2017) Changed paths: M doc/index.rst Log Message: ----------- DOC Add likely release month to news Commit: 722dea5e62df37325e91aebe9b02860f52f36d98 https://github.com/scikit-learn/scikit-learn/commit/722dea5e62df37325e91aeb… Author: Andreas Mueller <t3kcit(a)gmail.com> Date: 2017-10-16 (Mon, 16 Oct 2017) Changed paths: M sklearn/model_selection/_split.py M sklearn/model_selection/tests/test_split.py Log Message: ----------- [MRG+1] check that splitters handle 2d y and give reasonable errors on multilabel y (#9744) Commit: 58b90e5964a7050977060305b15ff3aa3f5b8ad4 https://github.com/scikit-learn/scikit-learn/commit/58b90e5964a705097706030… Author: Nathaniel Saul <nat(a)saulgill.com> Date: 2017-10-16 (Mon, 16 Oct 2017) Changed paths: M examples/svm/plot_separating_hyperplane_unbalanced.py Log Message: ----------- DOC show plot and fix comments (#9925) Commit: 4dc9ddff331ed632d3546055ccb936f10e4ea516 https://github.com/scikit-learn/scikit-learn/commit/4dc9ddff331ed632d354605… Author: Kumar Ashutosh <kumarashutosh.ee(a)gmail.com> Date: 2017-10-16 (Mon, 16 Oct 2017) Changed paths: M doc/modules/gaussian_process.rst M sklearn/gaussian_process/correlation_models.py M sklearn/gaussian_process/regression_models.py Log Message: ----------- [MRG] Deprecates gaussian process regression_models and correlation_models. 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7bcf5a1e98f337316c4ad63dd8590326ebae21e0 https://github.com/scikit-learn/scikit-learn/commit/7bcf5a1e98f337316c4ad63… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-17 (Tue, 17 Oct 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- DOC what's new Commit: 5f1bbf8b89e4f0611b2278803044f60a606b2fca https://github.com/scikit-learn/scikit-learn/commit/5f1bbf8b89e4f0611b22788… Author: Didi Bar-Zev <didi(a)hiredscore.com> Date: 2017-10-18 (Wed, 18 Oct 2017) Changed paths: M sklearn/multioutput.py Log Message: ----------- DOC fix inconsistency with current implementation (#9946) Commit: 754f73a5962bc9bfbc94b5450347e19836435e6f https://github.com/scikit-learn/scikit-learn/commit/754f73a5962bc9bfbc94b54… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-18 (Wed, 18 Oct 2017) Changed paths: M sklearn/utils/deprecation.py M sklearn/utils/tests/test_deprecation.py Log Message: ----------- Add DeprecationDict for #9677 Commit: 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<joel.nothman(a)gmail.com> Date: 2017-10-18 (Wed, 18 Oct 2017) Changed paths: M sklearn/gaussian_process/correlation_models.py M sklearn/gaussian_process/regression_models.py Log Message: ----------- DOC Correct deprecation version Commit: 23e1bea3bb890c6bf6da87bbacb1c5c3059787bf https://github.com/scikit-learn/scikit-learn/commit/23e1bea3bb890c6bf6da87b… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-18 (Wed, 18 Oct 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- DOC what's new Commit: 1b7d370de6d00c314abb16d6169d9ae552143992 https://github.com/scikit-learn/scikit-learn/commit/1b7d370de6d00c314abb16d… Author: Andreas Mueller <t3kcit(a)gmail.com> Date: 2017-10-19 (Thu, 19 Oct 2017) Changed paths: M sklearn/base.py M sklearn/tests/test_base.py M sklearn/tests/test_pipeline.py Log Message: ----------- FIX _BaseComposition._set_params with nested parameters (#9945) Commit: bf1dbe7ea526c006cbe8358f66f6b42930b5df93 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ndcg_score and dcg_score (#9932) Commit: 2a816fbd8bf1ca74fabfac5f6ba5ad762182875c https://github.com/scikit-learn/scikit-learn/commit/2a816fbd8bf1ca74fabfac5… Author: Hanmin Qin <qinhanmin2005(a)sina.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M doc/modules/classes.rst Log Message: ----------- DOC Add missing class (#9955) Commit: ad16bb45c666945563a74b71025e3742d57c463f https://github.com/scikit-learn/scikit-learn/commit/ad16bb45c666945563a74b7… Author: Reiichiro Nakano <reiichiro.s.nakano(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/model_selection/_validation.py M sklearn/model_selection/tests/test_validation.py Log Message: ----------- [MRG+1] Fix cross_val_predict behavior for binary classification in decision_function (Fixes #9589) (#9593) * fix cross_val_predict for binary classification in decision_function * Add unit tests * Add unit tests * Add unit tests * better fix * fix conflict * fix broken * only calculate n_classes if one of 'decision_function', 'predict_proba', 'predict_log_proba' * add test for SVC ovo in cross_val_predict * flake8 fix * fix case of ovo and imbalanced folds for binary classification * change assert_raises to assert_raise_message for ovo case * fix flake8 linetoo long * add comments and clearer tests * improve comments and error message for OvO * fix .format error with L * use assert_raises_regex for better error message * raise error in decision_function special cases. change predict_log_proba missing classes to minimum numpy value * fix broken tests due to special cases of decision_function * add modified test for decision_function behavior that does not trigger edge cases * fix typos * fix typos * escape regex . * escape regex . * address comments. one unaddressed comment * simplify code * flake * wrong classes range * address comments. adjust error message * add warning * change warning to runtimewarning * add test for the warning * Use assert_warns_message rather than assert_warns Other minor fixes * Note on class-absent replacement values * Improve error message Commit: 6bb4685f0fe40a74668870310c6eed784df92c37 https://github.com/scikit-learn/scikit-learn/commit/6bb4685f0fe40a746688703… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M CONTRIBUTING.md M doc/developers/contributing.rst Log Message: ----------- [MRG] DOC good first issue and help wanted labels (#9950) Commit: ca6b346d6915656030f97f327e2ef42d1dbca47d https://github.com/scikit-learn/scikit-learn/commit/ca6b346d6915656030f97f3… Author: Hanmin Qin <qinhanmin2005(a)sina.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M CONTRIBUTING.md M PULL_REQUEST_TEMPLATE.md M doc/developers/contributing.rst Log Message: ----------- DOC Encourage contributors to use keywords to close issue automatically (#9954) Commit: 59adbbbdc87d7750f257527172f1e583d4214b24 https://github.com/scikit-learn/scikit-learn/commit/59adbbbdc87d7750f257527… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/model_selection/tests/test_validation.py Log Message: ----------- Duplicate import Commit: 71841a91d929ede6043762e92ddd58e883068ed2 https://github.com/scikit-learn/scikit-learn/commit/71841a91d929ede6043762e… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- Add Reiichiro Nakano to contribs for 0.19.1 Commit: 904b560ea8f6e81e074d863649c16e868b4b38c5 https://github.com/scikit-learn/scikit-learn/commit/904b560ea8f6e81e074d863… Author: Ryan <ryantlee9(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/datasets/california_housing.py Log Message: ----------- Update StatLib database URL (#9550) Root URL responds with: `mysql://��:@localhost/nuke failed to connectAccess denied for user '��'@'localhost' (using password: YES)` Commit: 59e59484c2ba5bd797e3370b34d025e35511fe45 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Commit: 8f7f8f2fbf258f3f2316ed9c3ffc9fdc684f887d https://github.com/scikit-learn/scikit-learn/commit/8f7f8f2fbf258f3f2316ed9… Author: Shahebaz <shahebaz13(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M doc/modules/cross_validation.rst Log Message: ----------- [MRG+1] DOC fix headers level in cross_validation.rst (#9679) Commit: d835573fe70d9e52945af080a8d60e8632d69c67 https://github.com/scikit-learn/scikit-learn/commit/d835573fe70d9e52945af08… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/pipeline.py Log Message: ----------- MAINT comment on apparent inconsistency Commit: 33128c831dbb06a014abb98e165f57e1ff99f585 https://github.com/scikit-learn/scikit-learn/commit/33128c831dbb06a014abb98… Author: brett koonce <koonce(a)hello.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M doc/datasets/kddcup99.rst M doc/datasets/labeled_faces.rst M doc/modules/calibration.rst M doc/modules/gaussian_process.rst M doc/modules/manifold.rst M doc/modules/multiclass.rst M doc/modules/neighbors.rst M doc/modules/neural_networks_unsupervised.rst M doc/modules/pipeline.rst M doc/modules/preprocessing.rst M doc/modules/scaling_strategies.rst M doc/modules/svm.rst M doc/themes/scikit-learn/static/ML_MAPS_README.rst M doc/tutorial/statistical_inference/unsupervised_learning.rst M doc/tutorial/text_analytics/working_with_text_data.rst Log Message: ----------- various minor spelling tweaks (#9783) Commit: 4620829731314838bbcdee6423950b3277379e4b https://github.com/scikit-learn/scikit-learn/commit/4620829731314838bbcdee6… Author: Ekaterina Tuzova <ktisha(a)users.noreply.github.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/preprocessing/imputation.py Log Message: ----------- DOC: fix docstring of Imputer.fit (#9769) Commit: ed5511cc1603fe07af467dcd9e2d181ff71c5b33 https://github.com/scikit-learn/scikit-learn/commit/ed5511cc1603fe07af467dc… Author: Kye Taylor <taylorkm(a)users.noreply.github.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/model_selection/_split.py Log Message: ----------- [MRG+1] Fix #9743: Adding parameter information to docstring. (#9757) * Adding parameter information to docstring. * Removing trailing whitespace from lines. * Adding details of parameter to formal Parameters section. * Shortened lines to meet requirements. Commit: a11294a2806c83d0dcb5f32688f678e461075d0c https://github.com/scikit-learn/scikit-learn/commit/a11294a2806c83d0dcb5f32… Author: Albert Thomas <albertthomas88(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/neighbors/lof.py Log Message: ----------- FIX docstring of negative_outlier_factor_ in LOF (#9809) Commit: 9c89f2fd15da111556bdc51c81b21ad3906ce4b1 https://github.com/scikit-learn/scikit-learn/commit/9c89f2fd15da111556bdc51… Author: MarsGuy <kkiranraj2k(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/neighbors/regression.py Log Message: ----------- DOC Removed a duplicate occurrence of a word in 'sklearn.neighbors.KNeighborsRegressor' docs (#9862) * Removed a duplicate occurrence of the word 'but' from the 'Warning' section. Commit: bd326a94616d3768ed40fcc21fb77f41adbe45f3 https://github.com/scikit-learn/scikit-learn/commit/bd326a94616d3768ed40fcc… Author: jschendel <jschendel(a)users.noreply.github.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M doc/developers/contributing.rst Log Message: ----------- DOC: Use setattr(self, ...) instead of self.setattr(...) (#9866) Commit: 3c1e23a295d93b39103f7a825d8e5915b6e8df56 https://github.com/scikit-learn/scikit-learn/commit/3c1e23a295d93b39103f7a8… Author: Andreas Mueller <t3kcit(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M CONTRIBUTING.md M doc/faq.rst M doc/sphinxext/sphinx_issues.py M doc/themes/scikit-learn/layout.html M sklearn/linear_model/tests/test_bayes.py Log Message: ----------- [MRG+1] Fix typos in documentation (#9878) * Fix grammatical error in * Correct capitalization of "GitHub" Used command `find . -type f -exec sed -i 's/Github/GitHub/g' {} \;` (h/t: https://stackoverflow.com/a/15402972) # Conflicts: # doc/developers/contributing.rst Commit: dacf9e3f33164050b21b886785eef725885e8ae5 https://github.com/scikit-learn/scikit-learn/commit/dacf9e3f33164050b21b886… Author: kyledrogo <GKjohns(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M doc/modules/covariance.rst M sklearn/covariance/shrunk_covariance_.py Log Message: ----------- [MRG+1] Ledoit-Wolf behavior explanation (#9500) * DOC add explaination of unexpected behavior to ledoit-wolf functions and class * DOC add explaination of unexpected ledoit-wolf behavior to module documentation * fix line that's longer than 80 chars, pep8 issue * fix documentation changes to Ledoit_Wolf behavior explaination * change bahavior explanation to a note in documentation * remove unexpected behavior explanation from docstrings * fix broken links in docs Commit: 95cc1afc2345cc0eda48c5af4cf164b7d80167e4 https://github.com/scikit-learn/scikit-learn/commit/95cc1afc2345cc0eda48c5a… Author: Hossein Pourbozorg <hussein.pourbozorg(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/decomposition/online_lda.py Log Message: ----------- DOC fix a typo (#9892) Commit: 6a042a76a16d5f2347922424e25ee2c7dc3e001b https://github.com/scikit-learn/scikit-learn/commit/6a042a76a16d5f234792242… Author: Kyeongpil Kang <rudvlf0413(a)korea.ac.kr> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M doc/modules/ensemble.rst Log Message: ----------- [MRG+1] DOC fix sign in GBRT mathematical formulation (#9885) Commit: 5f934e24b7c11ee21482e864e81c7bf8418e5438 https://github.com/scikit-learn/scikit-learn/commit/5f934e24b7c11ee21482e86… Author: Kyeongpil Kang <rudvlf0413(a)korea.ac.kr> Date: 2017-10-21 (Sat, 21 Oct 2017) Changed paths: M doc/modules/ensemble.rst Log Message: ----------- [MRG+1] DOC fix sign in GBRT mathematical formulation (#9885) Commit: 72837915093a5a5b648ea784dc628b86d9c70199 https://github.com/scikit-learn/scikit-learn/commit/72837915093a5a5b648ea78… Author: Sam Radhakrishnan <sk09idm(a)gmail.com> Date: 2017-10-21 (Sat, 21 Oct 2017) Changed paths: M sklearn/linear_model/logistic.py Log Message: ----------- Fix LogisticRegressionCV default solver value in docstring (#9962) Commit: ef2408c58801232faf136c6cf38c767517bbdc4e https://github.com/scikit-learn/scikit-learn/commit/ef2408c58801232faf136c6… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-21 (Sat, 21 Oct 2017) Changed paths: M .mailmap M CONTRIBUTING.md M doc/datasets/kddcup99.rst M doc/datasets/labeled_faces.rst M doc/developers/contributing.rst M doc/faq.rst M doc/modules/calibration.rst M doc/modules/covariance.rst M doc/modules/cross_validation.rst M doc/modules/gaussian_process.rst M doc/modules/manifold.rst M doc/modules/multiclass.rst M doc/modules/neighbors.rst M doc/modules/neural_networks_unsupervised.rst M doc/modules/pipeline.rst M doc/modules/preprocessing.rst M doc/modules/scaling_strategies.rst M doc/modules/svm.rst M doc/sphinxext/sphinx_issues.py M doc/themes/scikit-learn/layout.html M doc/themes/scikit-learn/static/ML_MAPS_README.rst M doc/tutorial/statistical_inference/unsupervised_learning.rst M doc/tutorial/text_analytics/working_with_text_data.rst M sklearn/covariance/shrunk_covariance_.py M sklearn/datasets/california_housing.py M sklearn/decomposition/online_lda.py M sklearn/linear_model/sag_fast.pyx M sklearn/linear_model/tests/test_bayes.py M sklearn/metrics/ranking.py M sklearn/model_selection/_split.py M sklearn/model_selection/tests/test_search.py M sklearn/neighbors/lof.py M sklearn/neighbors/quad_tree.pyx M sklearn/neighbors/regression.py M sklearn/pipeline.py M sklearn/preprocessing/imputation.py Log Message: ----------- Merge branch 'for-0.19.1' of github.com:jnothman/scikit-learn into for-0.19.1 Commit: 3700b9606fb8672eb6db48881bcebb67ea50b0ff https://github.com/scikit-learn/scikit-learn/commit/3700b9606fb8672eb6db488… Author: nielsenmarkus11 <nielsenmarkus11(a)users.noreply.github.com> Date: 2017-10-21 (Sat, 21 Oct 2017) Changed paths: M sklearn/metrics/ranking.py M sklearn/metrics/tests/test_ranking.py M sklearn/utils/multiclass.py M sklearn/utils/tests/test_multiclass.py Log Message: ----------- [MRG+1] Raise error when SparseSeries is passed into classification metrics (#7373) * Raise error when SparseSeries is passed into roc_curve * Changed "y_true" in second if block to "y_score" * Remove code to import pandas and add sparseseries check to 'type_of_target' function. Finally, add 'type_of_target' call to _binary_clf_curve * Remove pandas import and old comparison in roc_curve. * Add test for 'type_of_target' function * Add white space after commas * Correct other white space issues * Move type_of_target test into try clause, remove test_precision_recall_curve_pos_label since as multiclass it doesn't make sense * Add test_precision_recall_curve_pos_label back in and also add test_binary_clf_curve to test new logic in _binary_clf_curve function * Correct syntax and formatting. * Remove trailing white space * Correct validation logic * Update test_multiclass.py per @jnothman 's request. * Import SkipTest function. * Remove extra white space from line 303 Commit: 0e1d261cb2c4c9906aea91d5586d3536c37dfc52 https://github.com/scikit-learn/scikit-learn/commit/0e1d261cb2c4c9906aea91d… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-21 (Sat, 21 Oct 2017) Changed paths: M doc/whats_new.rst Log Message: ----------- Name in what's new Commit: b661a9c81930429cba4a56af291ce2bf8c59f8c9 https://github.com/scikit-learn/scikit-learn/commit/b661a9c81930429cba4a56a… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-21 (Sat, 21 Oct 2017) Changed paths: M sklearn/feature_selection/tests/test_from_model.py Log Message: ----------- TST Improve SelectFromModel tests (#9733) Should fix one of the issues in #9393 Compare: https://github.com/scikit-learn/scikit-learn/compare/d5b69d3c87b3^...b661a9…

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[scikit-learn/scikit-learn] d9eba7: Fix LogisticRegressionCV default solver value in d...
by GitHub Oct. 20, 2017

Oct. 20, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: d9eba751bdb2492f9d77f10cb2ef28ecceed6ba5 https://github.com/scikit-learn/scikit-learn/commit/d9eba751bdb2492f9d77f10… Author: Sam Radhakrishnan <sk09idm(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/linear_model/logistic.py Log Message: ----------- Fix LogisticRegressionCV default solver value in docstring (#9962)

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[scikit-learn/scikit-learn] e0a299: [MRG+1] DOC fix sign in GBRT mathematical formulat...
by GitHub Oct. 20, 2017

Oct. 20, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: e0a29977cfdca42a467d0be24cdf79f8c3053b5a https://github.com/scikit-learn/scikit-learn/commit/e0a29977cfdca42a467d0be… Author: Kyeongpil Kang <rudvlf0413(a)korea.ac.kr> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M doc/modules/ensemble.rst Log Message: ----------- [MRG+1] DOC fix sign in GBRT mathematical formulation (#9885)

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[scikit-learn/scikit-learn] 85d670: Duplicate import
by GitHub Oct. 20, 2017

Oct. 20, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 85d670c3b187ad45187578525734cda9aae51621 https://github.com/scikit-learn/scikit-learn/commit/85d670c3b187ad451875785… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M sklearn/model_selection/tests/test_validation.py Log Message: ----------- Duplicate import

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[scikit-learn/scikit-learn] 8544ce: DOC Encourage contributors to use keywords to clos...
by GitHub Oct. 20, 2017

Oct. 20, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 8544ce553aeb08b336ab5fe5be20174af8a3fa34 https://github.com/scikit-learn/scikit-learn/commit/8544ce553aeb08b336ab5fe… Author: Hanmin Qin <qinhanmin2005(a)sina.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M CONTRIBUTING.md M PULL_REQUEST_TEMPLATE.md M doc/developers/contributing.rst Log Message: ----------- DOC Encourage contributors to use keywords to close issue automatically (#9954)

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[scikit-learn/scikit-learn] 7be446: [MRG] DOC good first issue and help wanted labels ...
by GitHub Oct. 20, 2017

Oct. 20, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 7be4465fe649f4d82a980886149ed779fa8ab518 https://github.com/scikit-learn/scikit-learn/commit/7be4465fe649f4d82a98088… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-10-20 (Fri, 20 Oct 2017) Changed paths: M CONTRIBUTING.md M doc/developers/contributing.rst Log Message: ----------- [MRG] DOC good first issue and help wanted labels (#9950)

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[scikit-learn/scikit-learn] ebc873: [MRG+1] Fix cross_val_predict behavior for binary ...
by GitHub Oct. 19, 2017

Oct. 19, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: ebc873034486eec763fc3a4435fc0066dff52155 https://github.com/scikit-learn/scikit-learn/commit/ebc873034486eec763fc3a4… Author: Reiichiro Nakano <reiichiro.s.nakano(a)gmail.com> Date: 2017-10-19 (Thu, 19 Oct 2017) Changed paths: M sklearn/model_selection/_validation.py M sklearn/model_selection/tests/test_validation.py Log Message: ----------- [MRG+1] Fix cross_val_predict behavior for binary classification in decision_function (Fixes #9589) (#9593) * fix cross_val_predict for binary classification in decision_function * Add unit tests * Add unit tests * Add unit tests * better fix * fix conflict * fix broken * only calculate n_classes if one of 'decision_function', 'predict_proba', 'predict_log_proba' * add test for SVC ovo in cross_val_predict * flake8 fix * fix case of ovo and imbalanced folds for binary classification * change assert_raises to assert_raise_message for ovo case * fix flake8 linetoo long * add comments and clearer tests * improve comments and error message for OvO * fix .format error with L * use assert_raises_regex for better error message * raise error in decision_function special cases. change predict_log_proba missing classes to minimum numpy value * fix broken tests due to special cases of decision_function * add modified test for decision_function behavior that does not trigger edge cases * fix typos * fix typos * escape regex . * escape regex . * address comments. one unaddressed comment * simplify code * flake * wrong classes range * address comments. adjust error message * add warning * change warning to runtimewarning * add test for the warning * Use assert_warns_message rather than assert_warns Other minor fixes * Note on class-absent replacement values * Improve error message

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[scikit-learn/scikit-learn] 45d1dd: DOC Add missing class (#9955)
by GitHub Oct. 19, 2017

Oct. 19, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 45d1dd2e99b4b813f9710a33b1351b43a949f2af https://github.com/scikit-learn/scikit-learn/commit/45d1dd2e99b4b813f9710a3… Author: Hanmin Qin <qinhanmin2005(a)sina.com> Date: 2017-10-19 (Thu, 19 Oct 2017) Changed paths: M doc/modules/classes.rst Log Message: ----------- DOC Add missing class (#9955)

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