Mailman 3 September 2017 - Scikit-learn-commits

[scikit-learn/scikit-learn] 4e6b40: FIX test broken in numpy 1.14.dev due to array str...
by GitHub Sept. 29, 2017

Sept. 29, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 4e6b403796238a1263b871a67d72d39ab61f2075 https://github.com/scikit-learn/scikit-learn/commit/4e6b403796238a1263b871a… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-09-29 (Fri, 29 Sep 2017) Changed paths: M sklearn/model_selection/tests/test_split.py Log Message: ----------- FIX test broken in numpy 1.14.dev due to array str changes

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[scikit-learn/scikit-learn] daeb3a: MAINT explain the reason for conftest.py in the ro...
by GitHub Sept. 29, 2017

Sept. 29, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: daeb3ad928a50605e2cc5a62694be1d292e7ecc8 https://github.com/scikit-learn/scikit-learn/commit/daeb3ad928a50605e2cc5a6… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-09-29 (Fri, 29 Sep 2017) Changed paths: M conftest.py Log Message: ----------- MAINT explain the reason for conftest.py in the root folder

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[scikit-learn/scikit-learn] 8de18e: FIX do not update conda as a temporary work-around...
by GitHub Sept. 27, 2017

Sept. 27, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 8de18e67b23b6875270aa714a0031f0ee3fe9b0d https://github.com/scikit-learn/scikit-learn/commit/8de18e67b23b6875270aa71… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-09-28 (Thu, 28 Sep 2017) Changed paths: M build_tools/circle/build_doc.sh M build_tools/travis/install.sh Log Message: ----------- FIX do not update conda as a temporary work-around for conda issue https://github.com/conda/conda/issues/6030

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[scikit-learn/scikit-learn] 8fb648: [MRG+1] Fix floating bug in roc_auc_score (#9786)
by GitHub Sept. 27, 2017

Sept. 27, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 8fb648af0e673a372e52b9e7ec0e4d48b47cc83f https://github.com/scikit-learn/scikit-learn/commit/8fb648af0e673a372e52b9e… Author: Hanmin Qin <qinhanmin2005(a)sina.com> Date: 2017-09-27 (Wed, 27 Sep 2017) Changed paths: M doc/whats_new/v0.20.rst M sklearn/metrics/ranking.py M sklearn/metrics/tests/test_common.py M sklearn/metrics/tests/test_ranking.py Log Message: ----------- [MRG+1] Fix floating bug in roc_auc_score (#9786) * ensure fpr and tpr are increasing in roc_curve with non integer sample weights * add tests and move roc_auc_score from METRIC_UNDEFINED_BINARY to METRIC_UNDEFINED_MULTICLASS

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[scikit-learn/scikit-learn] b9c79d: MAINT remove entire directory in make clean
by GitHub Sept. 27, 2017

Sept. 27, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: b9c79d486bf2573563e45dbec811f032eaaed583 https://github.com/scikit-learn/scikit-learn/commit/b9c79d486bf2573563e45db… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-09-28 (Thu, 28 Sep 2017) Changed paths: M doc/Makefile Log Message: ----------- MAINT remove entire directory in make clean

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[scikit-learn/scikit-learn] 5f863a: ENH avoid FutureWarning in BaseSGD.set_params (#98...
by GitHub Sept. 27, 2017

Sept. 27, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 5f863aa9918ae5b485a50fa93179b3497d6cc468 https://github.com/scikit-learn/scikit-learn/commit/5f863aa9918ae5b485a50fa… Author: Vrishank Bhardwaj <vrishank1997(a)gmail.com> Date: 2017-09-27 (Wed, 27 Sep 2017) Changed paths: M sklearn/linear_model/stochastic_gradient.py Log Message: ----------- ENH avoid FutureWarning in BaseSGD.set_params (#9802)

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[scikit-learn/scikit-learn] 45dc89: [MRG+2] Clean common tests (#9340)
by GitHub Sept. 26, 2017

Sept. 26, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 45dc891c96eebdb3b81bf14c2737d8f6540fabfe https://github.com/scikit-learn/scikit-learn/commit/45dc891c96eebdb3b81bf14… Author: Albert Thomas <albertthomas88(a)gmail.com> Date: 2017-09-26 (Tue, 26 Sep 2017) Changed paths: M sklearn/cluster/mean_shift_.py M sklearn/cluster/spectral.py M sklearn/cluster/tests/test_mean_shift.py M sklearn/cross_decomposition/pls_.py M sklearn/decomposition/fastica_.py M sklearn/discriminant_analysis.py M sklearn/ensemble/gradient_boosting.py M sklearn/feature_selection/univariate_selection.py M sklearn/gaussian_process/gpc.py M sklearn/linear_model/bayes.py M sklearn/linear_model/ransac.py M sklearn/linear_model/ridge.py M sklearn/linear_model/stochastic_gradient.py M sklearn/manifold/locally_linear.py M sklearn/manifold/t_sne.py M sklearn/manifold/tests/test_t_sne.py M sklearn/mixture/base.py M sklearn/model_selection/_split.py M sklearn/neighbors/nearest_centroid.py M sklearn/svm/base.py M sklearn/utils/estimator_checks.py Log Message: ----------- [MRG+2] Clean common tests (#9340) * rm dupes * add check_supervised_y_no_nan in classifier checks: this implies changes for Ridge classifiers * fix docstrings/comments * FIX check fitting 1d X array raises error and FIX check fitting 2d array with only 1 feature either works or returns informative message * modify check_fit2d_1sample in common tests so that it checks fitting either works or returns an informative message * rm SpectralClustering case for the moment * uniformize error messages for 1 sample case and fix SpectralClustering with ensure_min_samples=2 * add unit test for mean_shift when n_samples * quantile < 1 * FIX travis with ensure_min_samples=2 in _PLS * try fix for failing tSNE test * typos * take @agramfort's review into account * sc to fix string in gaussian_process * add the class that is present to preserve information of previous message in gpc.py

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[scikit-learn/scikit-learn] 6ddb88: DOC Resolve typo in nearest neighbors regression d...
by GitHub Sept. 26, 2017

Sept. 26, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 6ddb881523ca9f5e203826dd4d9416d985ac790d https://github.com/scikit-learn/scikit-learn/commit/6ddb881523ca9f5e203826d… Author: Christian Hogan <1cph93(a)gmail.com> Date: 2017-09-26 (Tue, 26 Sep 2017) Changed paths: M doc/modules/neighbors.rst Log Message: ----------- DOC Resolve typo in nearest neighbors regression docs (#9831)

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[scikit-learn/scikit-learn] 8de184: DOC Fix error in documentation of trustworthiness...
by GitHub Sept. 25, 2017

Sept. 25, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 8de1844c7c8e3e3ea5b4da7beb816ce5a44d1f00 https://github.com/scikit-learn/scikit-learn/commit/8de1844c7c8e3e3ea5b4da7… Author: wdevazelhes <31916524+wdevazelhes(a)users.noreply.github.com> Date: 2017-09-26 (Tue, 26 Sep 2017) Changed paths: M sklearn/manifold/t_sne.py Log Message: ----------- DOC Fix error in documentation of trustworthiness (#9800)

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[scikit-learn/scikit-learn] 59bb32: DOC Add average precision definitions and cross re...
by GitHub Sept. 25, 2017

Sept. 25, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 59bb32ff7112b491f39d68983b6589d3d9ded7d3 https://github.com/scikit-learn/scikit-learn/commit/59bb32ff7112b491f39d689… Author: Anthony Gitter <agitter(a)users.noreply.github.com> Date: 2017-09-25 (Mon, 25 Sep 2017) Changed paths: M doc/modules/model_evaluation.rst M examples/model_selection/plot_precision_recall.py M sklearn/metrics/ranking.py Log Message: ----------- DOC Add average precision definitions and cross references (#9583)

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[scikit-learn/scikit-learn] cceb9b: Fix plot_out_of_core_classification.py. (#9815)
by GitHub Sept. 25, 2017

Sept. 25, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: cceb9b22ac1c36341779aff59de8e6130671c19a https://github.com/scikit-learn/scikit-learn/commit/cceb9b22ac1c36341779aff… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-09-25 (Mon, 25 Sep 2017) Changed paths: M examples/applications/plot_out_of_core_classification.py Log Message: ----------- Fix plot_out_of_core_classification.py. (#9815) Starting from empty ~/scikit_learn_data got AttributeError: module 'sklearn.externals.six.moves.urllib_request' has no attribute 'urlretrieve'.

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[scikit-learn/scikit-learn] 6c99d7: [MRG+1] Make TSNE trustworthiness test more robust...
by GitHub Sept. 24, 2017

Sept. 24, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 6c99d797d7c71d216503612a242bffb8d006582d https://github.com/scikit-learn/scikit-learn/commit/6c99d797d7c71d216503612… Author: Olivier Grisel <olivier.grisel(a)ensta.org> Date: 2017-09-24 (Sun, 24 Sep 2017) Changed paths: M sklearn/manifold/tests/test_t_sne.py Log Message: ----------- [MRG+1] Make TSNE trustworthiness test more robust (#9808) Platform specific rounding errors can make the t-SNE algorithm converge to varying quality results especially on small datasets as done in this test. We therefore need a lower threshold to account for that variability.

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[scikit-learn/scikit-learn] c554aa: [MRG + 1] Fix ValueError in LabelEncoder when usin...
by GitHub Sept. 21, 2017

Sept. 21, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: c554aad456b6302a8dd8838769769eeecc1cf734 https://github.com/scikit-learn/scikit-learn/commit/c554aad456b6302a8dd8838… Author: Charlie Newey <charlie.newey(a)flightdataservices.com> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M sklearn/preprocessing/label.py M sklearn/preprocessing/tests/test_label.py Log Message: ----------- [MRG + 1] Fix ValueError in LabelEncoder when using inverse_transform on unseen labels (#9816)

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[scikit-learn/scikit-learn] a78b66: [MRG+1] remove 'matching' metric from docstrings (...
by GitHub Sept. 21, 2017

Sept. 21, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: a78b66f9f385a46e75463448b6d3f57ea3a020f9 https://github.com/scikit-learn/scikit-learn/commit/a78b66f9f385a46e7546344… Author: Osaid Rehman Nasir <osaid.nasir(a)gmail.com> Date: 2017-09-21 (Thu, 21 Sep 2017) Changed paths: M sklearn/metrics/pairwise.py M sklearn/neighbors/lof.py M sklearn/neighbors/unsupervised.py Log Message: ----------- [MRG+1] remove 'matching' metric from docstrings (#9727) scipy.spatial.distance.matching has been equivalent to hamming in scipy for a while.

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[scikit-learn/scikit-learn] c95784: FIX docstring of negative_outlier_factor_ in LOF (...
by GitHub Sept. 20, 2017

Sept. 20, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: c95784d14e2024ae09c425f6541bbb06554230b3 https://github.com/scikit-learn/scikit-learn/commit/c95784d14e2024ae09c425f… Author: Albert Thomas <albertthomas88(a)gmail.com> Date: 2017-09-20 (Wed, 20 Sep 2017) Changed paths: M sklearn/neighbors/lof.py Log Message: ----------- FIX docstring of negative_outlier_factor_ in LOF (#9809)

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[scikit-learn/scikit-learn] a552a1: TST Improve SelectFromModel tests (#9733)
by GitHub Sept. 20, 2017

Sept. 20, 2017

Branch: refs/heads/0.19.X Home: https://github.com/scikit-learn/scikit-learn Commit: a552a13f00c35d4091737add62282ce3152fdcd1 https://github.com/scikit-learn/scikit-learn/commit/a552a13f00c35d4091737ad… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-09-20 (Wed, 20 Sep 2017) Changed paths: M sklearn/feature_selection/tests/test_from_model.py Log Message: ----------- TST Improve SelectFromModel tests (#9733) Should fix one of the issues in #9393

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[scikit-learn/scikit-learn] 49af61: TST Improve SelectFromModel tests (#9733)
by GitHub Sept. 20, 2017

Sept. 20, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 49af61cb4206c34b75f6fa28393070fb1aafb775 https://github.com/scikit-learn/scikit-learn/commit/49af61cb4206c34b75f6fa2… Author: Joel Nothman <joel.nothman(a)gmail.com> Date: 2017-09-20 (Wed, 20 Sep 2017) Changed paths: M sklearn/feature_selection/tests/test_from_model.py Log Message: ----------- TST Improve SelectFromModel tests (#9733) Should fix one of the issues in #9393

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[scikit-learn/scikit-learn] dc99f9: TRAVIS use cython dev on scipy-dev build (#9803)
by GitHub Sept. 19, 2017

Sept. 19, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: dc99f912c70706577cad240eaf07a56e2de6ccde https://github.com/scikit-learn/scikit-learn/commit/dc99f912c70706577cad240… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-09-19 (Tue, 19 Sep 2017) Changed paths: M build_tools/travis/install.sh Log Message: ----------- TRAVIS use cython dev on scipy-dev build (#9803)

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[scikit-learn/scikit-learn] 3cfd1f: Use CYTHON_VERSION on ubuntu build (#9797)
by GitHub Sept. 19, 2017

Sept. 19, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 3cfd1faf610e61f3572597992d4b03b3d98a3ad2 https://github.com/scikit-learn/scikit-learn/commit/3cfd1faf610e61f35725979… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-09-19 (Tue, 19 Sep 2017) Changed paths: M build_tools/travis/install.sh Log Message: ----------- Use CYTHON_VERSION on ubuntu build (#9797)

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[scikit-learn/scikit-learn] e76c98: FIX fmin_cobyla: iprint is deprecated, use disp (#...
by GitHub Sept. 19, 2017

Sept. 19, 2017

Branch: refs/heads/0.19.X Home: https://github.com/scikit-learn/scikit-learn Commit: e76c980e9ee48a7ee2fc97821af98bd832f812c4 https://github.com/scikit-learn/scikit-learn/commit/e76c980e9ee48a7ee2fc978… Author: Olivier Grisel <olivier.grisel(a)ensta.org> Date: 2017-09-19 (Tue, 19 Sep 2017) Changed paths: M sklearn/gaussian_process/gaussian_process.py Log Message: ----------- FIX fmin_cobyla: iprint is deprecated, use disp (#9793)

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[scikit-learn/scikit-learn] c6fefb: FIX fmin_cobyla: iprint is deprecated, use disp (#...
by GitHub Sept. 19, 2017

Sept. 19, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: c6fefb0caaeb433c2e11f0d8829a878c39015194 https://github.com/scikit-learn/scikit-learn/commit/c6fefb0caaeb433c2e11f0d… Author: Olivier Grisel <olivier.grisel(a)ensta.org> Date: 2017-09-19 (Tue, 19 Sep 2017) Changed paths: M sklearn/gaussian_process/gaussian_process.py Log Message: ----------- FIX fmin_cobyla: iprint is deprecated, use disp (#9793)

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[scikit-learn/scikit-learn] e443c0: hange alpha in plot_label_propagation_structure.py...
by GitHub Sept. 19, 2017

Sept. 19, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: e443c05ea3a4c2634611253759ddbeb4367fe70c https://github.com/scikit-learn/scikit-learn/commit/e443c05ea3a4c2634611253… Author: Hanmin Qin <qinhanmin2005(a)sina.com> Date: 2017-09-19 (Tue, 19 Sep 2017) Changed paths: M examples/semi_supervised/plot_label_propagation_structure.py Log Message: ----------- hange alpha in plot_label_propagation_structure.py (#9788)

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[scikit-learn/scikit-learn] 08b524: [MRG+2] add `var_smoothing` parameter to GaussianN...
by GitHub Sept. 18, 2017

Sept. 18, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 08b524da7027aa7c99cc3f9fbaa2b498fa6869b9 https://github.com/scikit-learn/scikit-learn/commit/08b524da7027aa7c99cc3f9… Author: Dmitry Mottl <dmitry.mottl(a)gmail.com> Date: 2017-09-18 (Mon, 18 Sep 2017) Changed paths: M doc/whats_new/v0.20.rst M sklearn/naive_bayes.py M sklearn/pipeline.py M sklearn/tests/test_naive_bayes.py Log Message: ----------- [MRG+2] add `var_smoothing` parameter to GaussianNB (#9681)

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[scikit-learn/scikit-learn] 740077: [MRG+1] MAINT Replace assert_array_equal with -ass...
by GitHub Sept. 18, 2017

Sept. 18, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 74007756333ade1e8017bf6851705316852b97aa https://github.com/scikit-learn/scikit-learn/commit/74007756333ade1e8017bf6… Author: Bastian Venthur <mail(a)venthur.de> Date: 2017-09-18 (Mon, 18 Sep 2017) Changed paths: M sklearn/cluster/tests/test_birch.py M sklearn/cluster/tests/test_k_means.py M sklearn/cluster/tests/test_mean_shift.py M sklearn/datasets/tests/test_samples_generator.py M sklearn/datasets/tests/test_svmlight_format.py M sklearn/decomposition/tests/test_dict_learning.py M sklearn/ensemble/tests/test_bagging.py M sklearn/ensemble/tests/test_forest.py M sklearn/ensemble/tests/test_gradient_boosting.py M sklearn/ensemble/tests/test_voting_classifier.py M sklearn/ensemble/tests/test_weight_boosting.py M sklearn/feature_selection/tests/test_chi2.py M sklearn/feature_selection/tests/test_feature_select.py M sklearn/feature_selection/tests/test_from_model.py M sklearn/preprocessing/tests/test_imputation.py M sklearn/tests/test_dummy.py M sklearn/tests/test_naive_bayes.py Log Message: ----------- [MRG+1] MAINT Replace assert_array_equal with -assert_array_almost_equal where necessary. (#9774)

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[scikit-learn/scikit-learn] 8b5365: plot_stock_market.py checks are based on dates rat...
by GitHub Sept. 18, 2017

Sept. 18, 2017

Branch: refs/heads/master Home: https://github.com/scikit-learn/scikit-learn Commit: 8b53659e41b33a1dde79bd977fff092e1c412cbf https://github.com/scikit-learn/scikit-learn/commit/8b53659e41b33a1dde79bd9… Author: Loïc Estève <loic.esteve(a)ymail.com> Date: 2017-09-18 (Mon, 18 Sep 2017) Changed paths: M examples/applications/plot_stock_market.py Log Message: ----------- plot_stock_market.py checks are based on dates rather than on hard-coded values

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