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January 2019
- 1 participants
- 67 discussions
17 Jan '19
Branch: refs/heads/master
Home: https://github.com/scikit-learn/scikit-learn
Commit: 625dafe1dc93a6be567d33748e8745ff5f6b8852
https://github.com/scikit-learn/scikit-learn/commit/625dafe1dc93a6be567d337…
Author: Thomas Fan <thomasjpfan(a)gmail.com>
Date: 2019-01-17 (Thu, 17 Jan 2019)
Changed paths:
M doc/developers/contributing.rst
M doc/themes/scikit-learn/static/nature.css_t
Log Message:
-----------
DOC Update contributing style (#12998)
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
1
0
Branch: refs/heads/iterativeimputer
Home: https://github.com/scikit-learn/scikit-learn
Commit: b44dff8a086f37a960c8219ccd4694d1c87632eb
https://github.com/scikit-learn/scikit-learn/commit/b44dff8a086f37a960c8219…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2019-01-17 (Thu, 17 Jan 2019)
Changed paths:
M doc/modules/impute.rst
Log Message:
-----------
Fix doctest
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
1
0
Branch: refs/heads/master
Home: https://github.com/scikit-learn/scikit-learn
Commit: e4b4834d0ab261cb90310a745f4dfe3fb7151b16
https://github.com/scikit-learn/scikit-learn/commit/e4b4834d0ab261cb90310a7…
Author: Thomas Fan <thomasjpfan(a)gmail.com>
Date: 2019-01-17 (Thu, 17 Jan 2019)
Changed paths:
M doc/modules/ensemble.rst
Log Message:
-----------
DOC: Fixes link (#12996)
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
1
0
Branch: refs/heads/iterativeimputer
Home: https://github.com/scikit-learn/scikit-learn
Commit: d34f2270b73b8c8238789e1084d73f84f3bcc7a6
https://github.com/scikit-learn/scikit-learn/commit/d34f2270b73b8c8238789e1…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2019-01-17 (Thu, 17 Jan 2019)
Changed paths:
M sklearn/impute.py
Log Message:
-----------
Fix for SciPy 0.17
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
1
0
16 Jan '19
Branch: refs/heads/iterativeimputer
Home: https://github.com/scikit-learn/scikit-learn
Commit: 0aab6dc73f5284057233bfd91f1c39f80db1ddd9
https://github.com/scikit-learn/scikit-learn/commit/0aab6dc73f5284057233bfd…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2019-01-17 (Thu, 17 Jan 2019)
Changed paths:
M doc/modules/impute.rst
Log Message:
-----------
DOC Normalize whitespace in doctest
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
1
0
[scikit-learn/scikit-learn] 8a604f: FIX parallelisation of kmeans clustering (#12955)
by GitHub 16 Jan '19
by GitHub 16 Jan '19
16 Jan '19
Branch: refs/heads/master
Home: https://github.com/scikit-learn/scikit-learn
Commit: 8a604f7f87ce8a9b8dca83902dd090b296a37a37
https://github.com/scikit-learn/scikit-learn/commit/8a604f7f87ce8a9b8dca839…
Author: Prabakaran Kumaresshan <k_prabakaran+github(a)hotmail.com>
Date: 2019-01-17 (Thu, 17 Jan 2019)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/cluster/k_means_.py
Log Message:
-----------
FIX parallelisation of kmeans clustering (#12955)
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
1
0
Branch: refs/heads/iterativeimputer
Home: https://github.com/scikit-learn/scikit-learn
Commit: 9e106580a7147a0a65ce142f84700a278ebcad9a
https://github.com/scikit-learn/scikit-learn/commit/9e106580a7147a0a65ce142…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2019-01-17 (Thu, 17 Jan 2019)
Changed paths:
M doc/whats_new/v0.20.rst
Log Message:
-----------
Revert changes to v0.20.rst
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
1
0
Branch: refs/heads/iterativeimputer
Home: https://github.com/scikit-learn/scikit-learn
Commit: f103c6be7a0848303a2a8cbb8bbc74d37ace3b15
https://github.com/scikit-learn/scikit-learn/commit/f103c6be7a0848303a2a8cb…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2019-01-17 (Thu, 17 Jan 2019)
Changed paths:
M doc/whats_new/v0.20.rst
Log Message:
-----------
Undo changes to v0.20.rst
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
1
0
[scikit-learn/scikit-learn] f5a3fb: DOC clean what's new: duplicate linear_model secti...
by GitHub 16 Jan '19
by GitHub 16 Jan '19
16 Jan '19
Branch: refs/heads/master
Home: https://github.com/scikit-learn/scikit-learn
Commit: f5a3fb48d66ea65ffeca5fbc88c629a819032d1d
https://github.com/scikit-learn/scikit-learn/commit/f5a3fb48d66ea65ffeca5fb…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2019-01-17 (Thu, 17 Jan 2019)
Changed paths:
M doc/whats_new/v0.21.rst
Log Message:
-----------
DOC clean what's new: duplicate linear_model section
**NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.
1
0
[scikit-learn/scikit-learn] 4e2e1f: ENH Cache class mapping in MultiLabelBinarizer() (...
by GitHub 16 Jan '19
by GitHub 16 Jan '19
16 Jan '19
Branch: refs/heads/iterativeimputer
Home: https://github.com/scikit-learn/scikit-learn
Commit: 4e2e1fac0da592863b767356e30cee37f752b1bf
https://github.com/scikit-learn/scikit-learn/commit/4e2e1fac0da592863b76735…
Author: Ekaterina Krivich <krivich.ekaterina(a)gmail.com>
Date: 2018-10-09 (Tue, 09 Oct 2018)
Changed paths:
M doc/whats_new/v0.21.rst
M sklearn/preprocessing/label.py
M sklearn/preprocessing/tests/test_label.py
Log Message:
-----------
ENH Cache class mapping in MultiLabelBinarizer() (#12116)
Fixes #11680
Commit: 5fd9e03cf3a2e58d3b76dfaf0692437a4d6e1eec
https://github.com/scikit-learn/scikit-learn/commit/5fd9e03cf3a2e58d3b76dfa…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-10-08 (Mon, 08 Oct 2018)
Changed paths:
M sklearn/metrics/ranking.py
M sklearn/metrics/tests/test_ranking.py
Log Message:
-----------
ENH Raise an error when pos_label is not in binary y_true (#12313)
Commit: c5b020f908e628f4f2ed7e633b07cb5ef35f50a6
https://github.com/scikit-learn/scikit-learn/commit/c5b020f908e628f4f2ed7e6…
Author: Oleksandr Pavlyk <oleksandr-pavlyk(a)users.noreply.github.com>
Date: 2018-10-09 (Tue, 09 Oct 2018)
Changed paths:
M sklearn/cluster/tests/test_bicluster.py
Log Message:
-----------
TST Use v_measure_score to compare label arrays up to permutation (#12265)
Commit: 205ff38d66347459e330145e3e01c2393608a06f
https://github.com/scikit-learn/scikit-learn/commit/205ff38d66347459e330145…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-10-09 (Tue, 09 Oct 2018)
Changed paths:
M doc/whats_new/v0.20.rst
Log Message:
-----------
DOC What's new typo
Commit: 5df8cd3bd7fe709325e385b20df51f5c096774ae
https://github.com/scikit-learn/scikit-learn/commit/5df8cd3bd7fe709325e385b…
Author: Xing Han Lu <xhlperso(a)gmail.com>
Date: 2018-10-09 (Tue, 09 Oct 2018)
Changed paths:
M examples/linear_model/plot_ols_ridge_variance.py
Log Message:
-----------
EXA Fix title, overlapping plots and axis labels in plot_ols_ridge_variance.py (#12296)
Commit: 03c3af5bdec29903567fa3d63f2e6776a2b3041b
https://github.com/scikit-learn/scikit-learn/commit/03c3af5bdec29903567fa3d…
Author: janvanrijn <janvanrijn(a)gmail.com>
Date: 2018-10-09 (Tue, 09 Oct 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/datasets/openml.py
A sklearn/datasets/tests/data/openml/1119/api-v1-json-data-1119.json.gz
A sklearn/datasets/tests/data/openml/1119/api-v1-json-data-features-1119.json.gz
A sklearn/datasets/tests/data/openml/1119/api-v1-json-data-list-data_name-adult-census-limit-2-data_version-1.json.gz
A sklearn/datasets/tests/data/openml/1119/api-v1-json-data-list-data_name-adult-census-limit-2-status-active-.json.gz
A sklearn/datasets/tests/data/openml/1119/data-v1-download-54002.arff.gz
M sklearn/datasets/tests/test_openml.py
Log Message:
-----------
[MRG] Fix fetch_openml when ignore attributes are numeric (#12330)
* modularized data column functionality
* small bugfix
* removes redundant line breaks
* added some documentation on the added fn
* added additional comment on advice of Nicholas Hug
* added test case
* merged master into branch, and added small comments by Joel
* added doc item
Commit: bbb0d935f529b57885177fccf79f3b30f7ab568b
https://github.com/scikit-learn/scikit-learn/commit/bbb0d935f529b57885177fc…
Author: Eric Chang <ericchang2017(a)u.northwestern.edu>
Date: 2018-10-10 (Wed, 10 Oct 2018)
Changed paths:
M sklearn/preprocessing/data.py
M sklearn/preprocessing/tests/test_data.py
Log Message:
-----------
[MRG] FIX Update power_transform docstring and add FutureWarning (#12317)
Commit: c8a4132774e841fa91d986f74276945601e809df
https://github.com/scikit-learn/scikit-learn/commit/c8a4132774e841fa91d986f…
Author: Dmitry Vukolov <dmvuko(a)gmail.com>
Date: 2018-10-10 (Wed, 10 Oct 2018)
Changed paths:
M doc/developers/utilities.rst
M sklearn/utils/validation.py
Log Message:
-----------
DOC check_array() and check_X_y() documentation update (#12340)
Commit: a80bbd9403fea9cf4aa46dfef26a4b31a608957b
https://github.com/scikit-learn/scikit-learn/commit/a80bbd9403fea9cf4aa46df…
Author: Adrin Jalali <adrin.jalali(a)gmail.com>
Date: 2018-10-10 (Wed, 10 Oct 2018)
Changed paths:
M doc/whats_new/v0.21.rst
M sklearn/tree/_tree.pyx
M sklearn/tree/tests/test_tree.py
M sklearn/tree/tree.py
Log Message:
-----------
ENH add get_n_leaves() and get_max_depth() to DesicionTrees (#12300)
Commit: 00c2f411cf87c83abdf6ad59fa522ad16a2a18cb
https://github.com/scikit-learn/scikit-learn/commit/00c2f411cf87c83abdf6ad5…
Author: Adrin Jalali <adrin.jalali(a)gmail.com>
Date: 2018-10-10 (Wed, 10 Oct 2018)
Changed paths:
M sklearn/linear_model/logistic.py
Log Message:
-----------
DOC fix logistic regression.fit docstring on y (#12343)
Commit: 39bd736e595470840460b15ef0eaec398421c061
https://github.com/scikit-learn/scikit-learn/commit/39bd736e595470840460b15…
Author: Rohan Varma <rvarm1(a)gmail.com>
Date: 2018-10-10 (Wed, 10 Oct 2018)
Changed paths:
M sklearn/ensemble/forest.py
Log Message:
-----------
[MRG] Move RandomTreesEmbedding criterion & max_features to be class attributes (#12324)
* rm criterion and max_features from __init__ and store them as class attrs instead
* make sure that the docstring comes first
Commit: 831c760ccf7711fe95477b172da1f0a1616ac575
https://github.com/scikit-learn/scikit-learn/commit/831c760ccf7711fe95477b1…
Author: Krishna Sangeeth <kskrishnasangeeth(a)gmail.com>
Date: 2018-10-11 (Thu, 11 Oct 2018)
Changed paths:
M doc/modules/classes.rst
M doc/modules/model_evaluation.rst
M doc/whats_new/v0.21.rst
M sklearn/metrics/__init__.py
M sklearn/metrics/regression.py
M sklearn/metrics/scorer.py
M sklearn/metrics/tests/test_common.py
M sklearn/metrics/tests/test_regression.py
M sklearn/metrics/tests/test_score_objects.py
Log Message:
-----------
ENH (0.21) Add max_error to the existing set of metrics for regression (#12232)
Commit: 8985a6309d31b7e756338238c04aea5ad5603ab0
https://github.com/scikit-learn/scikit-learn/commit/8985a6309d31b7e75633823…
Author: Eric Chang <ericchang2017(a)u.northwestern.edu>
Date: 2018-10-11 (Thu, 11 Oct 2018)
Changed paths:
M doc/whats_new/v0.20.rst
Log Message:
-----------
DOC Update v0.20.rst with power_transform API change (#12351)
Commit: 0f94f2962b5b0573144dfd4a67803aea0bab99bd
https://github.com/scikit-learn/scikit-learn/commit/0f94f2962b5b0573144dfd4…
Author: Andreas Mueller <t3kcit(a)gmail.com>
Date: 2018-10-11 (Thu, 11 Oct 2018)
Changed paths:
M doc/modules/classes.rst
M sklearn/cluster/hierarchical.py
M sklearn/cluster/tests/test_hierarchical.py
M sklearn/covariance/graph_lasso_.py
M sklearn/covariance/tests/test_graph_lasso.py
M sklearn/covariance/tests/test_graphical_lasso.py
M sklearn/datasets/__init__.py
R sklearn/datasets/mlcomp.py
M sklearn/decomposition/fastica_.py
M sklearn/decomposition/online_lda.py
M sklearn/decomposition/sparse_pca.py
M sklearn/decomposition/tests/test_kernel_pca.py
M sklearn/decomposition/tests/test_online_lda.py
M sklearn/decomposition/tests/test_pca.py
M sklearn/decomposition/tests/test_sparse_pca.py
M sklearn/discriminant_analysis.py
M sklearn/gaussian_process/gpr.py
M sklearn/kernel_approximation.py
M sklearn/linear_model/__init__.py
M sklearn/linear_model/least_angle.py
R sklearn/linear_model/randomized_l1.py
M sklearn/linear_model/tests/test_huber.py
R sklearn/linear_model/tests/test_randomized_l1.py
M sklearn/manifold/t_sne.py
M sklearn/metrics/pairwise.py
M sklearn/metrics/tests/test_classification.py
M sklearn/metrics/tests/test_pairwise.py
M sklearn/model_selection/tests/test_split.py
M sklearn/neighbors/__init__.py
R sklearn/neighbors/approximate.py
R sklearn/neighbors/tests/test_approximate.py
M sklearn/neighbors/tests/test_kd_tree.py
M sklearn/neighbors/tests/test_lof.py
M sklearn/preprocessing/__init__.py
M sklearn/preprocessing/_function_transformer.py
M sklearn/preprocessing/data.py
M sklearn/preprocessing/tests/test_data.py
M sklearn/preprocessing/tests/test_encoders.py
M sklearn/preprocessing/tests/test_function_transformer.py
M sklearn/semi_supervised/label_propagation.py
M sklearn/semi_supervised/tests/test_label_propagation.py
M sklearn/tests/test_calibration.py
M sklearn/tests/test_discriminant_analysis.py
M sklearn/tests/test_kernel_approximation.py
R sklearn/utils/arpack.py
M sklearn/utils/extmath.py
M sklearn/utils/graph.py
M sklearn/utils/random.py
M sklearn/utils/setup.py
R sklearn/utils/sparsetools/__init__.py
R sklearn/utils/sparsetools/setup.py
R sklearn/utils/sparsetools/tests/__init__.py
M sklearn/utils/stats.py
M sklearn/utils/tests/test_extmath.py
R sklearn/utils/tests/test_graph.py
R sklearn/utils/tests/test_stats.py
M sklearn/utils/tests/test_utils.py
Log Message:
-----------
MNT simple deprecations and removals for 0.21 (#12238)
Part of #11992.
These were all the things that seemed pretty straight-forward. It's actually a bit bulky but should still be easy to review, hopefully.
Commit: c13ba26c4780d6088c40db3cc0f8367df4e27f1f
https://github.com/scikit-learn/scikit-learn/commit/c13ba26c4780d6088c40db3…
Author: Andreas Mueller <t3kcit(a)gmail.com>
Date: 2018-10-11 (Thu, 11 Oct 2018)
Changed paths:
M doc/Makefile
M doc/modules/tree.rst
M doc/whats_new/v0.21.rst
M examples/tree/plot_iris.py
M sklearn/tree/__init__.py
A sklearn/tree/_reingold_tilford.py
M sklearn/tree/export.py
M sklearn/tree/tests/test_export.py
A sklearn/tree/tests/test_reingold_tilford.py
Log Message:
-----------
[MRG] Matplotlib tree plotting (#9251)
* add reingold tillford tree layout algorithm
* add first silly implementation of matplotlib based plotting for trees
* object oriented design for export_graphviz so it can be extended
* add class for mlp export
* add colors
* separately scale x and y, add arrowheads, fix strings
* implement max_depth
* don't use alpha for coloring because it makes boxes transparent
* remove unused variables
* vertical center of boxes
* fix/simplify newline trimming
* somewhere in the middle of stuff
trying to get rid of scalex, scaley
* remove "find_longest_child" for now, fix tests
* make scalex and scaley internal, and ax local.
render everything once to get the bbox sizes, then again to actually plot it with known extents.
* add some margin to the max bbox width
* add _BaseTreeExporter baseclass
* add docstring to plot_tree
* use data coordinates so we can put the plot in a subplot, remove some hacks.
* remove scalex, scaley, add automatic font size
* use rendered stuff for setting limits (well nearly there)
* import plot_tree into tree module
* set limits before font size adjustment?
* add tree plotting via matplotlib to iris example and to docs
* pep8 fix
* skip doctest on plot_tree because matplotlib is not installed on all CI machines
* redo everything in axis pixel coordinates
re-introduce scalex, scaley
add max_extents to tree to get tree size before plotting
* fix max-depth
parent node positioning and don't consider deep nodes in layouting
* consider height in fontsize computation
in case someone gave us a very flat figure
* fix error when max_depth is None
* add docstring for tree plotting fontsize
* starting on jnothman's review
* renaming fixes
* whatsnew for tree plotting
* clear axes prior to doing anything.
* fix doctests
* skip matplotlib doctest
* trying to debug circle failure
* trying to show full traceback
* more print debugging
* remove debugging crud
* hack around matplotlib <1.5 issues
* copy bbox args because old matplotlib is weird.
* pep8 fixes
* add explicit boxstyle
* more pep8
* even more pep8
* add comment about matplotlib version requirement
* remove redundant file
* add whatsnew entry that the merge lost
* fix merge issue
* more merge issues
* whitespace ...
* remove doctest skip to see what's happening
* added some simple invariance tests buchheim function
* refactor
___init__ into superclass
* added some tests of plot_tree
* put skip back in, fix typo, fix versionadded number
* remove unused parameters special_characters and parallel_leaves from mpl plotting
* rename tests to test_reingold_tilford
* added license header from pymag-trees repo
* remove duplicate test file.
Commit: c76dc05881cdb1c2d5ad180f2c56a9af0c00e54c
https://github.com/scikit-learn/scikit-learn/commit/c76dc05881cdb1c2d5ad180…
Author: Xing Han Lu <xhlperso(a)gmail.com>
Date: 2018-10-13 (Sat, 13 Oct 2018)
Changed paths:
M examples/applications/plot_out_of_core_classification.py
Log Message:
-----------
EXA Fix labels overlap in Out-of-core classification of text documents example (#12359)
Commit: 1e7cd7df9dee31d035ddb789f8e5138201da0ebc
https://github.com/scikit-learn/scikit-learn/commit/1e7cd7df9dee31d035ddb78…
Author: Joris Van den Bossche <jorisvandenbossche(a)gmail.com>
Date: 2018-10-13 (Sat, 13 Oct 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/preprocessing/_encoders.py
M sklearn/preprocessing/tests/test_encoders.py
Log Message:
-----------
BUG Fix OrdinalEncoder with manually specified categories (#12367)
Commit: 76b10782a953ba355abd2717ed871284399091ed
https://github.com/scikit-learn/scikit-learn/commit/76b10782a953ba355abd271…
Author: jeremiedbb <34657725+jeremiedbb(a)users.noreply.github.com>
Date: 2018-10-13 (Sat, 13 Oct 2018)
Changed paths:
M sklearn/cluster/tests/test_k_means.py
Log Message:
-----------
TST Fix missing assert and parametrize k-means tests (#12368)
Commit: 0296916d7d61036eceafa1739599368a9aaf075b
https://github.com/scikit-learn/scikit-learn/commit/0296916d7d61036eceafa17…
Author: Erich Schubert <kno10(a)users.noreply.github.com>
Date: 2018-10-14 (Sun, 14 Oct 2018)
Changed paths:
M doc/whats_new/v0.21.rst
R sklearn/cluster/_optics_inner.pyx
M sklearn/cluster/optics_.py
M sklearn/cluster/setup.py
M sklearn/cluster/tests/test_optics.py
Log Message:
-----------
FIX (0.21) OPTICS processing order (#12357)
* Add a test case for OPTICS bug (closes #12134)
* ENH Fix processing order in OPTICS. See #12090
The current code may expand the wrong point, because it only considers
the neighbors of the current point, not all currently unprocessed points
(which may have a better reachability).
Using the distance from the latest point as tiebreaker then does not
work anymore, because it might not yet be computed for all unprocessed
points when using an index.
If we choose the first on ties, we get the same result same as R and ELKI.
But the order of points in "unproc" is also unstable, so we cannot rely
on the first smallest to have the smallest index.
Instead of the cython quick_scan, we now use numpy masked arrays.
Commit: 0ad873646b2b9ff74c58a9b9a6568a683ecea297
https://github.com/scikit-learn/scikit-learn/commit/0ad873646b2b9ff74c58a9b…
Author: Andreas Mueller <t3kcit(a)gmail.com>
Date: 2018-10-14 (Sun, 14 Oct 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/compose/_column_transformer.py
M sklearn/compose/tests/test_column_transformer.py
Log Message:
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[MRG] ENH apply sparse_threshold even if all columns are sparse (#12304)
Commit: 98357ec4d4e4626cc70e8aaa1380789894d64a93
https://github.com/scikit-learn/scikit-learn/commit/98357ec4d4e4626cc70e8aa…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2018-10-14 (Sun, 14 Oct 2018)
Changed paths:
M sklearn/utils/sparsefuncs.py
M sklearn/utils/tests/test_sparsefuncs.py
Log Message:
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FIX (0.21) make count_nonzero dtype invariant wrt axis (#12341)
Commit: 274ce3a08aafa26d8ffe69d9de9d2b97bde54fa7
https://github.com/scikit-learn/scikit-learn/commit/274ce3a08aafa26d8ffe69d…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2018-10-15 (Mon, 15 Oct 2018)
Changed paths:
M doc/conf.py
Log Message:
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DOC use default_role='any' (#12355)
Commit: f5ef674f3d02df2b4921052a5e97e559014f1ce2
https://github.com/scikit-learn/scikit-learn/commit/f5ef674f3d02df2b4921052…
Author: Cheuk Ting Ho <cheukting.ho(a)gmail.com>
Date: 2018-10-15 (Mon, 15 Oct 2018)
Changed paths:
M sklearn/preprocessing/_encoders.py
Log Message:
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DOC improve OneHotEncoder documentation (#12314)
Commit: 906f078c11d61197122d7a9acc75c86fd63534c7
https://github.com/scikit-learn/scikit-learn/commit/906f078c11d61197122d7a9…
Author: Gustavo De Mari Pereira <guhdemari(a)gmail.com>
Date: 2018-10-15 (Mon, 15 Oct 2018)
Changed paths:
M README.rst
Log Message:
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DOC Fix the link to computing docs (#12380)
Commit: afe0a9b70d5ac53836b38b9af3a95659307574fc
https://github.com/scikit-learn/scikit-learn/commit/afe0a9b70d5ac53836b38b9…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-10-16 (Tue, 16 Oct 2018)
Changed paths:
M sklearn/utils/tests/test_sparsefuncs.py
Log Message:
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MNT skip test falling on master in legacy platforms (#12382)
Commit: a1d0e96791ec6b4404303c5821e305caf6a5f777
https://github.com/scikit-learn/scikit-learn/commit/a1d0e96791ec6b4404303c5…
Author: bauks <43455488+bauks(a)users.noreply.github.com>
Date: 2018-10-16 (Tue, 16 Oct 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/preprocessing/tests/test_data.py
M sklearn/utils/extmath.py
Log Message:
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FIX Increase mean precision for large float32 arrays (#12338)
Commit: bea1eb51b34d5d61a3df217f5b7ed25f6b98eec3
https://github.com/scikit-learn/scikit-learn/commit/bea1eb51b34d5d61a3df217…
Author: Nicolas Hug <contact(a)nicolas-hug.com>
Date: 2018-10-16 (Tue, 16 Oct 2018)
Changed paths:
M doc/developers/contributing.rst
Log Message:
-----------
[MRG] Clarified indempotence of fit (#12305)
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#### Reference Issues/PRs
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#### What does this implement/fix? Explain your changes.
As far as I understand it, the fact that `fit` is idempotent means that repeated calls to `fit` with the same data doesn't change the estimator.
The contributing guide was a bit unclear about this.
#### Any other comments?
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Commit: d4c9e849ba1ab27930190d93fcfc33cc4b82470d
https://github.com/scikit-learn/scikit-learn/commit/d4c9e849ba1ab27930190d9…
Author: Nicolas Hug <contact(a)nicolas-hug.com>
Date: 2018-10-17 (Wed, 17 Oct 2018)
Changed paths:
M doc/modules/ensemble.rst
Log Message:
-----------
DOC minor clarifications in ensemble.rst (#11810)
Commit: d9b56b666d18315bb679d29d75878a538b91fc5e
https://github.com/scikit-learn/scikit-learn/commit/d9b56b666d18315bb679d29…
Author: Pulkit Maloo <maloo.pulkit(a)gmail.com>
Date: 2018-10-18 (Thu, 18 Oct 2018)
Changed paths:
M doc/modules/tree.rst
Log Message:
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DOC DecisionTreeClassifier does not support categorical data (#12402)
Commit: 53069c209ce96c8c16878b1b60894b776d4873c0
https://github.com/scikit-learn/scikit-learn/commit/53069c209ce96c8c16878b1…
Author: Corey Levinson <coreylevinson(a)uchicago.edu>
Date: 2018-10-18 (Thu, 18 Oct 2018)
Changed paths:
M sklearn/preprocessing/data.py
Log Message:
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DOC Change i.e. to e.g. in MinMaxScaler (#12415)
Commit: a5fa7d3e6f4094da336108c9b8082887043c2fdd
https://github.com/scikit-learn/scikit-learn/commit/a5fa7d3e6f4094da336108c…
Author: Andrew Nystrom <awnystrom(a)gmail.com>
Date: 2018-10-19 (Fri, 19 Oct 2018)
Changed paths:
A benchmarks/bench_feature_expansions.py
M doc/whats_new/v0.21.rst
A sklearn/preprocessing/_csr_polynomial_expansion.pyx
M sklearn/preprocessing/data.py
A sklearn/preprocessing/setup.py
M sklearn/preprocessing/tests/test_data.py
Log Message:
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[MRG] Fast PolynomialFeatures on CSR matrices (#12197)
Commit: 5bcd84be205ebfba6bb625615d3d1de6390a42cb
https://github.com/scikit-learn/scikit-learn/commit/5bcd84be205ebfba6bb6256…
Author: Krishna Sangeeth <kskrishnasangeeth(a)gmail.com>
Date: 2018-10-19 (Fri, 19 Oct 2018)
Changed paths:
M doc/whats_new/v0.21.rst
M sklearn/neighbors/base.py
M sklearn/neighbors/tests/test_neighbors.py
Log Message:
-----------
[MRG+1] Add check_is_fitted to non standard functions (#12279)
Commit: 99bea79857e069b747b6272447d35d165cf27d2b
https://github.com/scikit-learn/scikit-learn/commit/99bea79857e069b747b6272…
Author: Scott Lowe <scott.code.lowe(a)gmail.com>
Date: 2018-10-21 (Sun, 21 Oct 2018)
Changed paths:
M doc/modules/clustering.rst
Log Message:
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DOC: Fix typo where FMI was referred to as AMI (#12414)
Commit: 3c76b9c425048552a1850582bdc064baa1438185
https://github.com/scikit-learn/scikit-learn/commit/3c76b9c425048552a185058…
Author: joaak <29533036+joaak(a)users.noreply.github.com>
Date: 2018-10-21 (Sun, 21 Oct 2018)
Changed paths:
M doc/whats_new/v0.21.rst
M sklearn/linear_model/coordinate_descent.py
M sklearn/linear_model/tests/test_coordinate_descent.py
Log Message:
-----------
FIX 'MultiTaskLasso' object has no attribute 'coef_' when warm_start = True (#12361)
Commit: 5af272ac61214162aaaa33fa0d4d10fa5a4fc744
https://github.com/scikit-learn/scikit-learn/commit/5af272ac61214162aaaa33f…
Author: Matthew Roeschke <emailformattr(a)gmail.com>
Date: 2018-10-22 (Mon, 22 Oct 2018)
Changed paths:
M sklearn/cluster/bicluster.py
M sklearn/cluster/hierarchical.py
M sklearn/cluster/k_means_.py
M sklearn/covariance/robust_covariance.py
M sklearn/covariance/shrunk_covariance_.py
M sklearn/datasets/species_distributions.py
M sklearn/ensemble/weight_boosting.py
M sklearn/kernel_approximation.py
M sklearn/linear_model/huber.py
M sklearn/linear_model/least_angle.py
M sklearn/linear_model/stochastic_gradient.py
M sklearn/multiclass.py
M sklearn/naive_bayes.py
M sklearn/preprocessing/_encoders.py
M sklearn/preprocessing/data.py
M sklearn/random_projection.py
M sklearn/svm/base.py
M sklearn/utils/estimator_checks.py
Log Message:
-----------
MNT Remove unused variables (#12230)
Commit: 3a3a78a485571b45b3686f4fae1b132387a1ee1b
https://github.com/scikit-learn/scikit-learn/commit/3a3a78a485571b45b3686f4…
Author: Matthew Roeschke <emailformattr(a)gmail.com>
Date: 2018-10-22 (Mon, 22 Oct 2018)
Log Message:
-----------
MNT Remove unused variables (#12230)
Commit: 2ab196149f3348686dc3cd3fba504a4969e3bddd
https://github.com/scikit-learn/scikit-learn/commit/2ab196149f3348686dc3cd3…
Author: daten-kieker <daten-kieker(a)users.noreply.github.com>
Date: 2018-10-22 (Mon, 22 Oct 2018)
Changed paths:
M sklearn/svm/classes.py
Log Message:
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Resurrected PR #5224 from @andylamb. (#12427)
Commit: 81d2178ed0971586be7679e1efee56d3577c8810
https://github.com/scikit-learn/scikit-learn/commit/81d2178ed0971586be7679e…
Author: Koen <koenvandevelde(a)gmail.com>
Date: 2018-10-23 (Tue, 23 Oct 2018)
Changed paths:
M examples/cluster/plot_dbscan.py
Log Message:
-----------
EXA calculate number of noise points (#12428)
Commit: b498ac78dccf90b4b8cfe92d4b88a014928cd372
https://github.com/scikit-learn/scikit-learn/commit/b498ac78dccf90b4b8cfe92…
Author: Edward J Brown <edward.j.e.brown(a)gmail.com>
Date: 2018-10-23 (Tue, 23 Oct 2018)
Changed paths:
M sklearn/discriminant_analysis.py
M sklearn/tests/test_discriminant_analysis.py
Log Message:
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ENH Raise descriptive ValueError if number of samples equals number of classes in Linear Discriminant Analysis (#12391)
Commit: be742c358aa1e2f9ccfbea6e91cde181e8d30b2e
https://github.com/scikit-learn/scikit-learn/commit/be742c358aa1e2f9ccfbea6…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-10-23 (Tue, 23 Oct 2018)
Changed paths:
M sklearn/cluster/optics_.py
M sklearn/cluster/tests/test_optics.py
Log Message:
-----------
MNT Change default metric in OPTICS (#12439)
Commit: 013d295a13721ffade7ac321437c6d4458a64c7d
https://github.com/scikit-learn/scikit-learn/commit/013d295a13721ffade7ac32…
Author: jeremiedbb <34657725+jeremiedbb(a)users.noreply.github.com>
Date: 2018-10-23 (Tue, 23 Oct 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/datasets/olivetti_faces.py
Log Message:
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FIX olivetti_faces DESCR to point to the good location (#12441)
Commit: 88cdeb85a9303a7b580952b720703a4aca9dc1c0
https://github.com/scikit-learn/scikit-learn/commit/88cdeb85a9303a7b580952b…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-10-23 (Tue, 23 Oct 2018)
Changed paths:
M sklearn/cluster/optics_.py
M sklearn/cluster/tests/test_optics.py
Log Message:
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FIX (0.21) Correct RD/CD/order/predecessor in OPTICS (#12421)
Same results compared with ELKI dev version
Commit: dc883c7d9e64bd78854c63435c666af880043d76
https://github.com/scikit-learn/scikit-learn/commit/dc883c7d9e64bd78854c634…
Author: Lisa Sarah Thomas <lisasarahthomas(a)gmail.com>
Date: 2018-10-24 (Wed, 24 Oct 2018)
Changed paths:
M doc/modules/classes.rst
M doc/modules/clustering.rst
M doc/whats_new/v0.20.rst
M doc/whats_new/v0.21.rst
M sklearn/metrics/__init__.py
M sklearn/metrics/cluster/__init__.py
M sklearn/metrics/cluster/setup.py
M sklearn/metrics/cluster/tests/test_common.py
M sklearn/metrics/cluster/tests/test_unsupervised.py
M sklearn/metrics/cluster/unsupervised.py
Log Message:
-----------
ENH Corrected spelling of Harabasz score. (#12211)
Commit: ebe77d6936c352bc7688e8ae83f80752da8453d8
https://github.com/scikit-learn/scikit-learn/commit/ebe77d6936c352bc7688e8a…
Author: jeremiedbb <34657725+jeremiedbb(a)users.noreply.github.com>
Date: 2018-10-24 (Wed, 24 Oct 2018)
Changed paths:
M sklearn/preprocessing/tests/test_discretization.py
Log Message:
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modify kbins test using kmeans due to unstable local minimum (#12450)
Commit: 4e2da4af927567d94ec1874c817e7e948be5dda8
https://github.com/scikit-learn/scikit-learn/commit/4e2da4af927567d94ec1874…
Author: Nicolas Hug <contact(a)nicolas-hug.com>
Date: 2018-10-24 (Wed, 24 Oct 2018)
Changed paths:
M sklearn/decomposition/tests/test_kernel_pca.py
M sklearn/feature_selection/tests/test_from_model.py
M sklearn/kernel_approximation.py
M sklearn/linear_model/passive_aggressive.py
M sklearn/linear_model/stochastic_gradient.py
M sklearn/linear_model/tests/test_huber.py
M sklearn/linear_model/tests/test_passive_aggressive.py
M sklearn/linear_model/tests/test_perceptron.py
M sklearn/linear_model/tests/test_sgd.py
M sklearn/model_selection/tests/test_validation.py
M sklearn/tests/test_multiclass.py
M sklearn/tests/test_multioutput.py
Log Message:
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[MRG] Added FutureWarning in sgd models for tol parameter (#12399)
* Added ChangedBehaviorWarning in sgd models
if tol is None while max_iter is set
* Changed to FutureWarning and clarified None meaning
* Ignored warningin tests
* Ignore warnings in tests, round 2
Commit: e50fc2af940203226a9a83836a14d679c94a7486
https://github.com/scikit-learn/scikit-learn/commit/e50fc2af940203226a9a838…
Author: jeremiedbb <34657725+jeremiedbb(a)users.noreply.github.com>
Date: 2018-10-25 (Thu, 25 Oct 2018)
Changed paths:
M sklearn/mixture/tests/test_gaussian_mixture.py
Log Message:
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TST Fix test gaussian mixture warm start (#12452)
Commit: 9ec5a15823dcb924a5cca322f9f97357f9428345
https://github.com/scikit-learn/scikit-learn/commit/9ec5a15823dcb924a5cca32…
Author: Didi Bar-Zev <didi(a)hiredscore.com>
Date: 2018-10-26 (Fri, 26 Oct 2018)
Changed paths:
M sklearn/utils/__init__.py
Log Message:
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ALL Add resample and shuffle to __all__ (#12456)
Commit: 5cef1df11bc7ba337dc9cfc431e21659f4524457
https://github.com/scikit-learn/scikit-learn/commit/5cef1df11bc7ba337dc9cfc…
Author: Connossor <connor_tann(a)hotmail.com>
Date: 2018-10-27 (Sat, 27 Oct 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/ensemble/bagging.py
M sklearn/ensemble/tests/test_bagging.py
Log Message:
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FIX ensure max_features > 0 in ensemble.bagging (#12388)
Commit: 2912e3afa27ce39ed92291e1d19854c7ec644fbf
https://github.com/scikit-learn/scikit-learn/commit/2912e3afa27ce39ed92291e…
Author: jeremiedbb <34657725+jeremiedbb(a)users.noreply.github.com>
Date: 2018-10-27 (Sat, 27 Oct 2018)
Changed paths:
M sklearn/cluster/tests/test_k_means.py
Log Message:
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TST Parametrize, refactor and add new kmeans tests (#12432)
Commit: 338f763c21be73e584be2fffced180cbd295b6df
https://github.com/scikit-learn/scikit-learn/commit/338f763c21be73e584be2ff…
Author: Utkarsh Upadhyay <502876+musically-ut(a)users.noreply.github.com>
Date: 2018-10-29 (Mon, 29 Oct 2018)
Changed paths:
M conftest.py
Log Message:
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TST Throw correct error for pytest version (#12475)
Commit: e67e30cec29ba9a8c505d1c722cc1461a0e31fee
https://github.com/scikit-learn/scikit-learn/commit/e67e30cec29ba9a8c505d1c…
Author: Olivier Grisel <olivier.grisel(a)ensta.org>
Date: 2018-10-29 (Mon, 29 Oct 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/cluster/bicluster.py
M sklearn/datasets/samples_generator.py
M sklearn/dummy.py
M sklearn/linear_model/base.py
M sklearn/metrics/scorer.py
M sklearn/metrics/tests/test_score_objects.py
M sklearn/neighbors/base.py
M sklearn/preprocessing/data.py
Log Message:
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Fix numpy vstack on generator expressions (#12467)
* Workaround vstack issue with genxp
* Use list comprehensions instead of genexps with np.vstack
* Add changelog entry.
Commit: d4802aeac55475171850d6cf121718e879ab93eb
https://github.com/scikit-learn/scikit-learn/commit/d4802aeac55475171850d6c…
Author: mail-liam <30469495+mail-liam(a)users.noreply.github.com>
Date: 2018-10-29 (Mon, 29 Oct 2018)
Changed paths:
M doc/modules/clustering.rst
Log Message:
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Fix mean shift equation as per issue 12420 (#12455)
#### Reference Issues/PRs
Fixes #12420
#### What does this implement/fix? Explain your changes.
Updates the mean shift equation as per issue 12420
Commit: f6b0c67290d3cbc8b099eb7559b4f42b84af2584
https://github.com/scikit-learn/scikit-learn/commit/f6b0c67290d3cbc8b099eb7…
Author: Nicolas Hug <contact(a)nicolas-hug.com>
Date: 2018-10-29 (Mon, 29 Oct 2018)
Changed paths:
M doc/whats_new/v0.21.rst
M sklearn/utils/estimator_checks.py
Log Message:
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TST Added estimator check for idempotence of fit() (#12328)
Commit: a1fabce6531bc75964588ef9f7f95527cae899bc
https://github.com/scikit-learn/scikit-learn/commit/a1fabce6531bc75964588ef…
Author: daten-kieker <daten-kieker(a)users.noreply.github.com>
Date: 2018-10-30 (Tue, 30 Oct 2018)
Changed paths:
M doc/modules/metrics.rst
Log Message:
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DOC Mention of pairwise_distances in Guide on Metrics (#12416)
Commit: 65556317c975c91973a2c9c6851f8598cefe29f3
https://github.com/scikit-learn/scikit-learn/commit/65556317c975c91973a2c9c…
Author: Shangwu Yao <shangwuy(a)andrew.cmu.edu>
Date: 2018-10-30 (Tue, 30 Oct 2018)
Changed paths:
M doc/modules/classes.rst
M doc/modules/model_evaluation.rst
M doc/whats_new/v0.21.rst
M sklearn/metrics/__init__.py
M sklearn/metrics/classification.py
M sklearn/metrics/tests/test_classification.py
M sklearn/metrics/tests/test_common.py
Log Message:
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FEA (0.21) multilabel confusion matrix (#11179)
Commit: c2f17d0fc0e57a9ed00b895b5f419d956adfc5cf
https://github.com/scikit-learn/scikit-learn/commit/c2f17d0fc0e57a9ed00b895…
Author: jeremiedbb <34657725+jeremiedbb(a)users.noreply.github.com>
Date: 2018-10-30 (Tue, 30 Oct 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/metrics/pairwise.py
M sklearn/metrics/tests/test_pairwise.py
Log Message:
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FIX pairwise_distances_argmin_min wrong with metric="euclidean" (#12481)
Commit: 478267ed1319ed766f90ba627c3bfa4b72d85999
https://github.com/scikit-learn/scikit-learn/commit/478267ed1319ed766f90ba6…
Author: Thomas Fan <thomasjpfan(a)gmail.com>
Date: 2018-10-31 (Wed, 31 Oct 2018)
Changed paths:
M doc/modules/compose.rst
Log Message:
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DOC Small fix in compose.rst (#12487)
Commit: 83ac5dc2767044a8c8f8c202777dc7a5793bdce0
https://github.com/scikit-learn/scikit-learn/commit/83ac5dc2767044a8c8f8c20…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-10-31 (Wed, 31 Oct 2018)
Changed paths:
M doc/whats_new/v0.20.rst
Log Message:
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MNT what's new corrections
Commit: c6455fa77f519481f516ded02da66ecaf4b044c9
https://github.com/scikit-learn/scikit-learn/commit/c6455fa77f519481f516ded…
Author: Roopam Sharma <roopamsharma49(a)gmail.com>
Date: 2018-10-31 (Wed, 31 Oct 2018)
Changed paths:
M sklearn/tree/setup.py
Log Message:
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Fix include .pxd definitions for sklearn.tree in wheels (#12381)
Commit: 1c88b3c9c76c392741692b57fd379c018bc6cedb
https://github.com/scikit-learn/scikit-learn/commit/1c88b3c9c76c392741692b5…
Author: Ming Li <14131823+minggli(a)users.noreply.github.com>
Date: 2018-10-31 (Wed, 31 Oct 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/decomposition/incremental_pca.py
M sklearn/decomposition/tests/test_incremental_pca.py
M sklearn/utils/__init__.py
Log Message:
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Fix IncrementalPCA when final batch is smaller than dimensions required for SVD (#12379)
Commit: d42d0d7ae40ca905e4719e82f8fa73e41e590c80
https://github.com/scikit-learn/scikit-learn/commit/d42d0d7ae40ca905e4719e8…
Author: Federico Caselli <CaselIT(a)users.noreply.github.com>
Date: 2018-11-02 (Fri, 02 Nov 2018)
Changed paths:
M doc/developers/contributing.rst
Log Message:
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DOC fix broken link in doc/developers/contributing.rst (#12508)
Commit: 6226cf59ad884c12420347eafee55ee9d4f179a5
https://github.com/scikit-learn/scikit-learn/commit/6226cf59ad884c12420347e…
Author: Yaroslav Halchenko <debian(a)onerussian.com>
Date: 2018-11-02 (Fri, 02 Nov 2018)
Changed paths:
M sklearn/ensemble/tests/test_forest.py
M sklearn/linear_model/tests/test_logistic.py
M sklearn/utils/testing.py
Log Message:
-----------
TST skip test_backend_respected if joblib is forced into serial mode (#12496)
Commit: 036dfdde213498fd9a40210ea92cb24b4474a4b7
https://github.com/scikit-learn/scikit-learn/commit/036dfdde213498fd9a40210…
Author: Olivier Grisel <olivier.grisel(a)ensta.org>
Date: 2018-11-04 (Sun, 04 Nov 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/mixture/base.py
M sklearn/mixture/tests/test_bayesian_mixture.py
M sklearn/mixture/tests/test_gaussian_mixture.py
Log Message:
-----------
Fix inconsistent labels returned by BayesianGaussianMixture.fit_predict (#12451)
Commit: a028416609a347c93bcd27b052cf4ad2c8b82a21
https://github.com/scikit-learn/scikit-learn/commit/a028416609a347c93bcd27b…
Author: Tulio Casagrande <tuliocasagrande(a)gmail.com>
Date: 2018-11-04 (Sun, 04 Nov 2018)
Changed paths:
M sklearn/preprocessing/data.py
Log Message:
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DOC Add details to StandardScaler calculation (#12446)
Commit: 9f842e3496ab59ad593b46553fadff7b2490ef1a
https://github.com/scikit-learn/scikit-learn/commit/9f842e3496ab59ad593b465…
Author: Thomas Fan <thomasjpfan(a)gmail.com>
Date: 2018-11-05 (Mon, 05 Nov 2018)
Changed paths:
M doc/modules/compose.rst
M doc/whats_new/v0.21.rst
M examples/compose/plot_compare_reduction.py
M sklearn/pipeline.py
M sklearn/tests/test_pipeline.py
Log Message:
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API Adds passthrough option to Pipeline (#11674)
Commit: f24e3000b8c3055b2ff5d0cb6be3d857af3cec1d
https://github.com/scikit-learn/scikit-learn/commit/f24e3000b8c3055b2ff5d0c…
Author: Pierre Glaser <pierreglaser(a)msn.com>
Date: 2018-11-05 (Mon, 05 Nov 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/linear_model/stochastic_gradient.py
M sklearn/linear_model/tests/test_sgd.py
Log Message:
-----------
Impose shared memory when fitting a SGDClassifier (#12498)
Commit: 6d9acd7de67fcdcddbf4e2a462270e2ef90f39c9
https://github.com/scikit-learn/scikit-learn/commit/6d9acd7de67fcdcddbf4e2a…
Author: Tom Dupré la Tour <tom.dupre-la-tour(a)m4x.org>
Date: 2018-11-05 (Mon, 05 Nov 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M doc/whats_new/v0.21.rst
Log Message:
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MNT what's new corrections
Commit: 6b4e00deb02951ff5ab7cd8a70309381db4226f9
https://github.com/scikit-learn/scikit-learn/commit/6b4e00deb02951ff5ab7cd8…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-11-06 (Tue, 06 Nov 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/preprocessing/_discretization.py
Log Message:
-----------
MNT KBinsDiscretizer.transform should not mutate _encoder (#12514)
Fixes #12490
Commit: 5d8dfc9677e410de2dbd1daf1963696577869d59
https://github.com/scikit-learn/scikit-learn/commit/5d8dfc9677e410de2dbd1da…
Author: Zach Miller <ZWMiller(a)users.noreply.github.com>
Date: 2018-11-06 (Tue, 06 Nov 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/utils/tests/test_validation.py
M sklearn/utils/validation.py
Log Message:
-----------
FIX SkLearn `.score()` method generating error with Dask DataFrames (#12462)
Commit: c676981fcf08274fa0d178d8ecd0534ec1a9d2fe
https://github.com/scikit-learn/scikit-learn/commit/c676981fcf08274fa0d178d…
Author: Adrin Jalali <adrin.jalali(a)gmail.com>
Date: 2018-11-06 (Tue, 06 Nov 2018)
Changed paths:
M sklearn/cluster/optics_.py
Log Message:
-----------
MNT (0.21) OPTiCS change the default `algorithm` to `auto` (#12529)
Commit: 5196657be8c1280b2a8e4149ff78f92d549f22dd
https://github.com/scikit-learn/scikit-learn/commit/5196657be8c1280b2a8e414…
Author: Roman Yurchak <rth.yurchak(a)pm.me>
Date: 2018-11-06 (Tue, 06 Nov 2018)
Changed paths:
M sklearn/cluster/hierarchical.py
Log Message:
-----------
[MRG] Fix segfault in AgglomerativeClustering with read-only mmaps (#12485)
This fixes a segfault in AgglomerativeClustering with read-only mmaps that happens inside `ward_tree` when calling `scipy.cluster.hierarchy.ward`.
Closes https://github.com/scikit-learn/scikit-learn/issues/12483
(see the above issue for more details)
Commit: 6f5fec9b6a8354f33489465c9f39ee5b4409e2c1
https://github.com/scikit-learn/scikit-learn/commit/6f5fec9b6a8354f33489465…
Author: Dan Stine <dstine(a)users.noreply.github.com>
Date: 2018-11-06 (Tue, 06 Nov 2018)
Changed paths:
M doc/glossary.rst
Log Message:
-----------
Fix dead link to numpydoc (#12532)
Commit: 8e3a191d962aece658903eafc257a8c1608422e1
https://github.com/scikit-learn/scikit-learn/commit/8e3a191d962aece658903ea…
Author: Andreas Mueller <andreas.mueller(a)columbia.edu>
Date: 2018-11-06 (Tue, 06 Nov 2018)
Changed paths:
M doc/whats_new/v0.21.rst
Log Message:
-----------
fix typo in whatsnew
Commit: 1128094271923c66f9e602372ba7ee8b7f565e52
https://github.com/scikit-learn/scikit-learn/commit/1128094271923c66f9e6023…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2018-11-06 (Tue, 06 Nov 2018)
Changed paths:
M .travis.yml
M doc/modules/computing.rst
M doc/whats_new/v0.20.rst
M sklearn/ensemble/forest.py
M sklearn/ensemble/tests/test_forest.py
M sklearn/linear_model/coordinate_descent.py
M sklearn/linear_model/logistic.py
M sklearn/linear_model/stochastic_gradient.py
M sklearn/linear_model/tests/test_sgd.py
M sklearn/utils/fixes.py
M sklearn/utils/tests/test_fixes.py
Log Message:
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BLD we should ensure continued support for joblib 0.11 (#12350)
Commit: 8408b467f2ea47718650da0e939710285397b9b0
https://github.com/scikit-learn/scikit-learn/commit/8408b467f2ea47718650da0…
Author: Didi Bar-Zev <didi(a)hiredscore.com>
Date: 2018-11-06 (Tue, 06 Nov 2018)
Changed paths:
M sklearn/feature_extraction/text.py
Log Message:
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ALL Add HashingVectorizer to __all__ (#12534)
Commit: 54de1896f56f5c381ef28096eb40ea1d4ab4da3b
https://github.com/scikit-learn/scikit-learn/commit/54de1896f56f5c381ef2809…
Author: Andreas Mueller <t3kcit(a)gmail.com>
Date: 2018-11-07 (Wed, 07 Nov 2018)
Changed paths:
M doc/modules/classes.rst
M doc/whats_new/v0.21.rst
Log Message:
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DOC (0.21) Make sure plot_tree docs are generated and fix link in whatsnew (#12533)
Commit: c68f306a79b6986fde1a86fe00367dd1415009a2
https://github.com/scikit-learn/scikit-learn/commit/c68f306a79b6986fde1a86f…
Author: Nicholas Smith <nicholastoddsmith(a)gmail.com>
Date: 2018-11-07 (Wed, 07 Nov 2018)
Changed paths:
M sklearn/cluster/k_means_.py
Log Message:
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DOC tweak KMeans regarding cluster_centers_ convergence (#12537)
Commit: c81e25586988e5d021673fe7413991191876b144
https://github.com/scikit-learn/scikit-learn/commit/c81e25586988e5d021673fe…
Author: Olivier Grisel <olivier.grisel(a)ensta.org>
Date: 2018-11-07 (Wed, 07 Nov 2018)
Changed paths:
M sklearn/externals/joblib/__init__.py
M sklearn/externals/joblib/_dask.py
M sklearn/externals/joblib/_parallel_backends.py
M sklearn/externals/joblib/compressor.py
M sklearn/externals/joblib/externals/cloudpickle/__init__.py
M sklearn/externals/joblib/externals/cloudpickle/cloudpickle.py
M sklearn/externals/joblib/externals/loky/__init__.py
M sklearn/externals/joblib/externals/loky/backend/__init__.py
M sklearn/externals/joblib/externals/loky/backend/compat.py
M sklearn/externals/joblib/externals/loky/backend/queues.py
M sklearn/externals/joblib/externals/loky/backend/reduction.py
M sklearn/externals/joblib/externals/loky/backend/semaphore_tracker.py
M sklearn/externals/joblib/externals/loky/backend/utils.py
M sklearn/externals/joblib/externals/loky/cloudpickle_wrapper.py
M sklearn/externals/joblib/externals/loky/process_executor.py
M sklearn/externals/joblib/memory.py
M sklearn/externals/joblib/parallel.py
M sklearn/externals/joblib/pool.py
Log Message:
-----------
joblib 0.13.0 (#12531)
Commit: 664ff3474f939db61387d7b9872ce9eafb407797
https://github.com/scikit-learn/scikit-learn/commit/664ff3474f939db61387d7b…
Author: Olivier Grisel <olivier.grisel(a)ensta.org>
Date: 2018-11-07 (Wed, 07 Nov 2018)
Changed paths:
M doc/whats_new/v0.21.rst
M sklearn/ensemble/bagging.py
M sklearn/ensemble/iforest.py
Log Message:
-----------
ENH Prefer threads for IsolationForest (#12543)
Commit: 3282d43ccc90b887c7567e28606b516e60221281
https://github.com/scikit-learn/scikit-learn/commit/3282d43ccc90b887c7567e2…
Author: janvanrijn <janvanrijn(a)gmail.com>
Date: 2018-11-07 (Wed, 07 Nov 2018)
Changed paths:
M sklearn/datasets/openml.py
A sklearn/datasets/tests/data/openml/1/api-v1-json-data-1.json.gz
A sklearn/datasets/tests/data/openml/1/api-v1-json-data-features-1.json.gz
A sklearn/datasets/tests/data/openml/1/data-v1-download-1.arff.gz
A sklearn/datasets/tests/data/openml/3/api-v1-json-data-3.json.gz
A sklearn/datasets/tests/data/openml/3/api-v1-json-data-features-3.json.gz
A sklearn/datasets/tests/data/openml/3/data-v1-download-3.arff.gz
M sklearn/datasets/tests/test_openml.py
Log Message:
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[MRG] Additional Warnings in case OpenML auto-detected a problem with dataset (#12541)
* added additional warning output
* added features gzip
* added gzipped datasets
* fix file naming
* changed expected warning msg
Commit: 042843a2ddf72441ac60234016b0e2b362ecc92c
https://github.com/scikit-learn/scikit-learn/commit/042843a2ddf72441ac60234…
Author: Nicolas Hug <contact(a)nicolas-hug.com>
Date: 2018-11-08 (Thu, 08 Nov 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/preprocessing/data.py
M sklearn/preprocessing/tests/test_data.py
Log Message:
-----------
FIX YeoJohnson transform lambda bounds (#12522)
Commit: ea115c2f8ab3bf1c0ce0b041b375dc80a0d82202
https://github.com/scikit-learn/scikit-learn/commit/ea115c2f8ab3bf1c0ce0b04…
Author: Gael Varoquaux <gael.varoquaux(a)normalesup.org>
Date: 2018-11-10 (Sat, 10 Nov 2018)
Changed paths:
A doc/testimonials/images/jpmorgan.png
M doc/testimonials/testimonials.rst
Log Message:
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DOC: add a testimonial from JP Morgan (#12555)
Commit: 362cb3bcabad2ec5d9d0c29ea1ec69558a64d76b
https://github.com/scikit-learn/scikit-learn/commit/362cb3bcabad2ec5d9d0c29…
Author: Yaroslav Halchenko <debian(a)onerussian.com>
Date: 2018-11-11 (Sun, 11 Nov 2018)
Changed paths:
M sklearn/cluster/tests/test_affinity_propagation.py
M sklearn/cluster/tests/test_bicluster.py
M sklearn/cluster/tests/test_feature_agglomeration.py
M sklearn/cluster/tests/test_hierarchical.py
M sklearn/cluster/tests/test_k_means.py
M sklearn/cluster/tests/test_mean_shift.py
M sklearn/compose/tests/test_column_transformer.py
M sklearn/cross_decomposition/tests/test_pls.py
M sklearn/datasets/tests/test_20news.py
M sklearn/datasets/tests/test_base.py
M sklearn/datasets/tests/test_rcv1.py
M sklearn/datasets/tests/test_samples_generator.py
M sklearn/decomposition/tests/test_dict_learning.py
M sklearn/decomposition/tests/test_fastica.py
M sklearn/decomposition/tests/test_nmf.py
M sklearn/decomposition/tests/test_online_lda.py
M sklearn/decomposition/tests/test_pca.py
M sklearn/decomposition/tests/test_sparse_pca.py
M sklearn/ensemble/tests/test_bagging.py
M sklearn/ensemble/tests/test_base.py
M sklearn/ensemble/tests/test_forest.py
M sklearn/ensemble/tests/test_gradient_boosting.py
M sklearn/ensemble/tests/test_voting_classifier.py
M sklearn/ensemble/tests/test_weight_boosting.py
M sklearn/feature_extraction/tests/test_dict_vectorizer.py
M sklearn/feature_extraction/tests/test_feature_hasher.py
M sklearn/feature_extraction/tests/test_image.py
M sklearn/feature_extraction/tests/test_text.py
M sklearn/feature_selection/tests/test_feature_select.py
M sklearn/feature_selection/tests/test_from_model.py
M sklearn/feature_selection/tests/test_rfe.py
M sklearn/gaussian_process/tests/test_gpr.py
M sklearn/linear_model/tests/test_coordinate_descent.py
M sklearn/linear_model/tests/test_least_angle.py
M sklearn/linear_model/tests/test_logistic.py
M sklearn/linear_model/tests/test_omp.py
M sklearn/linear_model/tests/test_passive_aggressive.py
M sklearn/linear_model/tests/test_ridge.py
M sklearn/linear_model/tests/test_sgd.py
M sklearn/linear_model/tests/test_sparse_coordinate_descent.py
M sklearn/manifold/tests/test_locally_linear.py
M sklearn/manifold/tests/test_spectral_embedding.py
M sklearn/metrics/tests/test_pairwise.py
M sklearn/metrics/tests/test_score_objects.py
M sklearn/mixture/tests/test_gaussian_mixture.py
M sklearn/model_selection/tests/test_search.py
M sklearn/model_selection/tests/test_split.py
M sklearn/model_selection/tests/test_validation.py
M sklearn/neighbors/tests/test_neighbors.py
M sklearn/neural_network/tests/test_rbm.py
M sklearn/neural_network/tests/test_stochastic_optimizers.py
M sklearn/preprocessing/tests/test_data.py
M sklearn/preprocessing/tests/test_label.py
M sklearn/svm/tests/test_bounds.py
M sklearn/svm/tests/test_sparse.py
M sklearn/svm/tests/test_svm.py
M sklearn/tests/test_base.py
M sklearn/tests/test_discriminant_analysis.py
M sklearn/tests/test_dummy.py
M sklearn/tests/test_isotonic.py
M sklearn/tests/test_kernel_approximation.py
M sklearn/tests/test_metaestimators.py
M sklearn/tests/test_multiclass.py
M sklearn/tests/test_pipeline.py
M sklearn/utils/estimator_checks.py
M sklearn/utils/mocking.py
M sklearn/utils/tests/test_class_weight.py
M sklearn/utils/tests/test_estimator_checks.py
M sklearn/utils/tests/test_extmath.py
M sklearn/utils/tests/test_metaestimators.py
M sklearn/utils/tests/test_random.py
M sklearn/utils/tests/test_utils.py
M sklearn/utils/tests/test_validation.py
Log Message:
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TST autoreplace assert_true(...==...) with plain assert (#12547)
Commit: 43e3a0208547605a5dae709283ca15327d48b48a
https://github.com/scikit-learn/scikit-learn/commit/43e3a0208547605a5dae709…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-11-11 (Sun, 11 Nov 2018)
Changed paths:
M sklearn/cluster/tests/test_affinity_propagation.py
M sklearn/cluster/tests/test_bicluster.py
M sklearn/cluster/tests/test_feature_agglomeration.py
M sklearn/cluster/tests/test_hierarchical.py
M sklearn/cluster/tests/test_k_means.py
M sklearn/cluster/tests/test_mean_shift.py
M sklearn/compose/tests/test_column_transformer.py
M sklearn/cross_decomposition/tests/test_pls.py
M sklearn/datasets/tests/test_20news.py
M sklearn/datasets/tests/test_base.py
M sklearn/datasets/tests/test_rcv1.py
M sklearn/datasets/tests/test_samples_generator.py
M sklearn/decomposition/tests/test_dict_learning.py
M sklearn/decomposition/tests/test_fastica.py
M sklearn/decomposition/tests/test_nmf.py
M sklearn/decomposition/tests/test_online_lda.py
M sklearn/decomposition/tests/test_pca.py
M sklearn/decomposition/tests/test_sparse_pca.py
M sklearn/ensemble/tests/test_bagging.py
M sklearn/ensemble/tests/test_base.py
M sklearn/ensemble/tests/test_forest.py
M sklearn/ensemble/tests/test_gradient_boosting.py
M sklearn/ensemble/tests/test_weight_boosting.py
M sklearn/feature_extraction/tests/test_dict_vectorizer.py
M sklearn/feature_extraction/tests/test_feature_hasher.py
M sklearn/feature_extraction/tests/test_text.py
M sklearn/feature_selection/tests/test_feature_select.py
M sklearn/feature_selection/tests/test_from_model.py
M sklearn/feature_selection/tests/test_rfe.py
M sklearn/linear_model/tests/test_least_angle.py
M sklearn/linear_model/tests/test_logistic.py
M sklearn/linear_model/tests/test_passive_aggressive.py
M sklearn/linear_model/tests/test_ridge.py
M sklearn/linear_model/tests/test_sgd.py
M sklearn/linear_model/tests/test_sparse_coordinate_descent.py
M sklearn/manifold/tests/test_locally_linear.py
M sklearn/manifold/tests/test_spectral_embedding.py
M sklearn/metrics/tests/test_pairwise.py
M sklearn/mixture/tests/test_gaussian_mixture.py
M sklearn/neighbors/tests/test_neighbors.py
M sklearn/neural_network/tests/test_stochastic_optimizers.py
M sklearn/preprocessing/tests/test_data.py
M sklearn/preprocessing/tests/test_label.py
M sklearn/svm/tests/test_sparse.py
M sklearn/tests/test_discriminant_analysis.py
M sklearn/tests/test_dummy.py
M sklearn/tests/test_multiclass.py
M sklearn/tests/test_pipeline.py
M sklearn/utils/tests/test_class_weight.py
M sklearn/utils/tests/test_estimator_checks.py
M sklearn/utils/tests/test_extmath.py
M sklearn/utils/tests/test_random.py
M sklearn/utils/tests/test_utils.py
M sklearn/utils/tests/test_validation.py
Log Message:
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MNT Remove unused assert_true imports (#12560)
Commit: eb36e4905a2c5156d2abcbec7441071330aefd35
https://github.com/scikit-learn/scikit-learn/commit/eb36e4905a2c5156d2abcbe…
Author: Andreas Mueller <t3kcit(a)gmail.com>
Date: 2018-11-11 (Sun, 11 Nov 2018)
Changed paths:
M sklearn/preprocessing/_encoders.py
Log Message:
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MNT Don't change self.n_values in OneHotEncoder.fit (#12286)
Commit: 862288591d8e5053cb26c1893955400b3be399e2
https://github.com/scikit-learn/scikit-learn/commit/862288591d8e5053cb26c18…
Author: Nikolay Shebanov <nikolay.shebanov(a)gmail.com>
Date: 2018-11-11 (Sun, 11 Nov 2018)
Changed paths:
M doc/related_projects.rst
Log Message:
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DOC Add skorch to related projects (#12561)
Skorch wraps Pytorch, which makes it awesome. This is a response to [an open issue in Skorch repo](https://github.com/dnouri/skorch/issues/217).
Commit: eb36c28fd9a5735f597502bae7e1a029408c6cf1
https://github.com/scikit-learn/scikit-learn/commit/eb36c28fd9a5735f597502b…
Author: Roman Yurchak <rth.yurchak(a)pm.me>
Date: 2018-11-11 (Sun, 11 Nov 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/feature_extraction/tests/test_text.py
M sklearn/feature_extraction/text.py
Log Message:
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FIX stop words validation in text vectorizers with custom preprocessors / tokenizers (#12393)
Commit: 6c5f285a32271da0580410927df4cc1cc53f94ad
https://github.com/scikit-learn/scikit-learn/commit/6c5f285a32271da05804109…
Author: ^__^ <ilya.persky(a)gmail.com>
Date: 2018-11-12 (Mon, 12 Nov 2018)
Changed paths:
M examples/linear_model/plot_iris_logistic.py
Log Message:
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EXA Fix comment in plot-iris-logistic example (#12564)
Commit: 7c2b47a3c194387e19eed99e6fe58370a5f9594e
https://github.com/scikit-learn/scikit-learn/commit/7c2b47a3c194387e19eed99…
Author: JackLangerman <JackMLangerman(a)gmail.com>
Date: 2018-11-12 (Mon, 12 Nov 2018)
Changed paths:
M sklearn/metrics/classification.py
Log Message:
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DOC Add 's' to "correspond" in docs for Hamming Loss. (#12565)
Commit: 4e8194909ce0f8879ebe8073ae5d37e3fdc8a00f
https://github.com/scikit-learn/scikit-learn/commit/4e8194909ce0f8879ebe807…
Author: jeremiedbb <34657725+jeremiedbb(a)users.noreply.github.com>
Date: 2018-11-12 (Mon, 12 Nov 2018)
Changed paths:
M sklearn/utils/fixes.py
M sklearn/utils/tests/test_fixes.py
Log Message:
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FIX remove FutureWarning in _object_dtype_isnan and add test (#12567)
Commit: 4b78d7abf4203a1cd4495c38fdc3665fb94b3a4c
https://github.com/scikit-learn/scikit-learn/commit/4b78d7abf4203a1cd4495c3…
Author: Quentin Batista <quentin.batista(a)mail.mcgill.ca>
Date: 2018-11-12 (Mon, 12 Nov 2018)
Changed paths:
M doc/modules/cross_validation.rst
M examples/model_selection/plot_learning_curve.py
M sklearn/calibration.py
M sklearn/covariance/graph_lasso_.py
M sklearn/feature_selection/rfe.py
M sklearn/linear_model/coordinate_descent.py
M sklearn/linear_model/least_angle.py
M sklearn/linear_model/omp.py
M sklearn/linear_model/ridge.py
M sklearn/model_selection/_search.py
M sklearn/model_selection/_split.py
M sklearn/model_selection/_validation.py
M sklearn/multioutput.py
Log Message:
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DOC: Clarify `cv` parameter description in `GridSearchCV` (#12495)
#### Reference Issues/PRs
<!--
Example: Fixes #1234. See also #3456.
Please use keywords (e.g., Fixes) to create link to the issues or pull requests
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This PR addresses issue #12466.
#### What does this implement/fix? Explain your changes.
This PR does the 3 following things:
- Rewrite the `cv` parameter description in `GridSearchCV`
- Link the new `CV splitter` description to an existing example
- Add an example with a custom iterable
Thanks for reviewing this!
Close #12466
Commit: 2afee939df90e92e7dcde7d738c5be5f5611dae0
https://github.com/scikit-learn/scikit-learn/commit/2afee939df90e92e7dcde7d…
Author: Dillon Gardner <dillongardner(a)users.noreply.github.com>
Date: 2018-11-13 (Tue, 13 Nov 2018)
Changed paths:
M sklearn/preprocessing/_encoders.py
M sklearn/preprocessing/tests/test_encoders.py
Log Message:
-----------
FIX incorrect error when OneHotEncoder.transform called prior to fit (#12443)
Commit: 1f2dd75175c0b560b7a7b71744713b2f0dc3b83b
https://github.com/scikit-learn/scikit-learn/commit/1f2dd75175c0b560b7a7b71…
Author: Ramil Nugmanov <stsouko(a)live.ru>
Date: 2018-11-13 (Tue, 13 Nov 2018)
Changed paths:
M sklearn/ensemble/tests/test_voting_classifier.py
Log Message:
-----------
MNT bare asserts (#12571)
Commit: 32e5fd4fe8ff9f66886d8ac69c6514a9295d358a
https://github.com/scikit-learn/scikit-learn/commit/32e5fd4fe8ff9f66886d8ac…
Author: Olivier Grisel <olivier.grisel(a)ensta.org>
Date: 2018-11-13 (Tue, 13 Nov 2018)
Changed paths:
M sklearn/neighbors/base.py
Log Message:
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FIX Workaround limitation of cloudpickle under PyPy (#12566)
Commit: 914a9158cec661419ca14ca3917d00585580efe1
https://github.com/scikit-learn/scikit-learn/commit/914a9158cec661419ca14ca…
Author: Radostin Stoyanov <rst0git(a)users.noreply.github.com>
Date: 2018-11-13 (Tue, 13 Nov 2018)
Changed paths:
M sklearn/neural_network/multilayer_perceptron.py
Log Message:
-----------
DOC Fix typo (#12563)
Commit: d0e99db0a2fd6217a3d09caf51905d3e44b92a0a
https://github.com/scikit-learn/scikit-learn/commit/d0e99db0a2fd6217a3d09ca…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2018-11-13 (Tue, 13 Nov 2018)
Changed paths:
M sklearn/tests/test_docstring_parameters.py
Log Message:
-----------
TST don't test utils.fixes docstrings (#12576)
Commit: 02dc9ed680e7f53f1b0d410dcdd37341c7958eb1
https://github.com/scikit-learn/scikit-learn/commit/02dc9ed680e7f53f1b0d410…
Author: Adrin Jalali <adrin.jalali(a)gmail.com>
Date: 2018-11-13 (Tue, 13 Nov 2018)
Changed paths:
M doc/whats_new/v0.21.rst
M sklearn/ensemble/tests/test_forest.py
M sklearn/ensemble/tests/test_gradient_boosting.py
M sklearn/tree/_tree.pyx
M sklearn/tree/tests/test_tree.py
Log Message:
-----------
Fix max_depth overshoot in BFS expansion of trees (#12344)
* fix the issue with max_depth and BestFirstTreeBuilder
* fix the test
* fix max_depth overshoot in BFS expansion
* fix forest tests
* remove the warning, add whats_new entry
* remove extra line
* add affected classes to changed classes
* add other affected estimators to the whats_new changed models
* shorten whats_new changed models entry
Commit: 4b0a70ce5c03eafe38095fefdf8d1b90069cd6c3
https://github.com/scikit-learn/scikit-learn/commit/4b0a70ce5c03eafe38095fe…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-11-14 (Wed, 14 Nov 2018)
Changed paths:
M sklearn/tests/test_dummy.py
Log Message:
-----------
TST Use NotFittedError instead of ValueError in test_dummy.py (#12579)
Commit: 14c816e2b864f238b4751f68c7fc5e69741f028a
https://github.com/scikit-learn/scikit-learn/commit/14c816e2b864f238b4751f6…
Author: Thomas Fan <thomasjpfan(a)gmail.com>
Date: 2018-11-14 (Wed, 14 Nov 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/datasets/openml.py
M sklearn/datasets/tests/test_openml.py
Log Message:
-----------
ENH/FIX openml, Adds retrying if reading from cache fails (#12526)
Commit: 94db3d932c393569be97886642049c8920182a77
https://github.com/scikit-learn/scikit-learn/commit/94db3d932c393569be97886…
Author: Reshama Shaikh <rs2715(a)stern.nyu.edu>
Date: 2018-11-14 (Wed, 14 Nov 2018)
Changed paths:
M sklearn/metrics/scorer.py
M sklearn/metrics/tests/test_score_objects.py
Log Message:
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ENH Improved error message for bad predict_proba shape in ThresholdScorer (#12486)
Continues and resolves #12221, fixes #7598
Commit: bfc4a566423e036fbdc9fb02765fd893e4860c85
https://github.com/scikit-learn/scikit-learn/commit/bfc4a566423e036fbdc9fb0…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-11-14 (Wed, 14 Nov 2018)
Changed paths:
M sklearn/mixture/tests/test_gaussian_mixture.py
Log Message:
-----------
MNT Duplicate import
Commit: c47c8a92e433650d9a34c20eebf4d093cb6a7663
https://github.com/scikit-learn/scikit-learn/commit/c47c8a92e433650d9a34c20…
Author: janvanrijn <janvanrijn(a)gmail.com>
Date: 2018-11-15 (Thu, 15 Nov 2018)
Changed paths:
M doc/modules/impute.rst
M sklearn/impute.py
Log Message:
-----------
DOC improved documentation of MissingIndicator (#12424)
Commit: 24e46410bd606fd32cc18f6d9cb7e9efe695597e
https://github.com/scikit-learn/scikit-learn/commit/24e46410bd606fd32cc18f6…
Author: Peter <phausamann(a)users.noreply.github.com>
Date: 2018-11-15 (Thu, 15 Nov 2018)
Changed paths:
M sklearn/base.py
M sklearn/tests/test_base.py
Log Message:
-----------
FIX: clone behavior for estimator types (#12585)
Fixes #12521
Commit: 0b85b0a922fc7e0c9b8f5dea1caf026cd9a75a57
https://github.com/scikit-learn/scikit-learn/commit/0b85b0a922fc7e0c9b8f5de…
Author: Olivier Grisel <olivier.grisel(a)ensta.org>
Date: 2018-11-15 (Thu, 15 Nov 2018)
Changed paths:
M sklearn/preprocessing/data.py
Log Message:
-----------
FIX use ellipsis in PowerTransformer doctest (#12595)
Commit: feed6c7139f7e680c3f24963c3a9327d821f3c69
https://github.com/scikit-learn/scikit-learn/commit/feed6c7139f7e680c3f2496…
Author: SylvainLan <sylvain.lannuzel(a)student.ecp.fr>
Date: 2018-11-16 (Fri, 16 Nov 2018)
Changed paths:
M doc/modules/gaussian_process.rst
Log Message:
-----------
DOC fix typos in gaussian_process.rst (#12602)
Commit: 1d579556d2f9f05aa21bf24e4c9d798adef96e87
https://github.com/scikit-learn/scikit-learn/commit/1d579556d2f9f05aa21bf24…
Author: Sam Waterbury <samwaterbury1(a)gmail.com>
Date: 2018-11-18 (Sun, 18 Nov 2018)
Changed paths:
M sklearn/model_selection/_split.py
Log Message:
-----------
DOV consistency of parameters for GroupKFold and LeaveOneGroupOut (#12581)
Commit: 82e095ce957913e1ff6a3f7214bbc65fedc2eccb
https://github.com/scikit-learn/scikit-learn/commit/82e095ce957913e1ff6a3f7…
Author: melsyt <42623406+melsyt(a)users.noreply.github.com>
Date: 2018-11-18 (Sun, 18 Nov 2018)
Changed paths:
M doc/images/lda_model_graph.png
M doc/modules/decomposition.rst
M sklearn/decomposition/online_lda.py
Log Message:
-----------
DOC generative model description etc for LatentDirichletAllocation (#12216)
Commit: 62117f482e39757d3e5f25568e1180dcfa695363
https://github.com/scikit-learn/scikit-learn/commit/62117f482e39757d3e5f255…
Author: Gabriel Marzinotto <gabriel.marzinotto(a)gmail.com>
Date: 2018-11-18 (Sun, 18 Nov 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/preprocessing/_encoders.py
M sklearn/preprocessing/tests/test_encoders.py
Log Message:
-----------
Bug with string dtype in OneHotEncoder with handle_unknown='ignore' (#12471)
* fix decisionTree issue #12259
* merge splitters
* fix decisionTree issue #12259
* merge splitters
* relaunch tests
* fix for ohe string sizes
* reverse tree changes because not done yet
* error with file
* pylinting
* add regression test and check if categories are strings before casting to object
* pylint
* pylint
* another posibility to handle the strings
* pylint
* pylint
* pylint
* add issue reference and explain the test
* handle object case
* update master test
* update master test
* Update _encoders.py
pylint
* Update test_encoders.py
* Update test_encoders.py
* Update _encoders.py
* Update _encoders.py
* fix checking for object type
* fix checking for object type
* fix checking for object type
* fix checking for object type
* fix encoder
* change check encoder
* add note in whats new
Commit: 66507a25a4a5bac6ac5e75843392af044ca7012c
https://github.com/scikit-learn/scikit-learn/commit/66507a25a4a5bac6ac5e758…
Author: Roman Yurchak <rth.yurchak(a)pm.me>
Date: 2018-11-19 (Mon, 19 Nov 2018)
Changed paths:
M .circleci/config.yml
M .travis.yml
A build_tools/circle/flake8_diff.sh
R build_tools/travis/flake8_diff.sh
M build_tools/travis/install.sh
M build_tools/travis/test_docs.sh
M build_tools/travis/test_script.sh
M doc/developers/contributing.rst
M doc/developers/tips.rst
Log Message:
-----------
MAINT Use CircleCI for linting (#12606)
Commit: 9ecada83d8ec66f19436bd3632fb3635d890c6ca
https://github.com/scikit-learn/scikit-learn/commit/9ecada83d8ec66f19436bd3…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2018-11-19 (Mon, 19 Nov 2018)
Changed paths:
M doc/modules/clustering.rst
Log Message:
-----------
DOC fix TeX error in Davies Bouldin formula
Commit: 4ab60559c8795ed92e7084d60e41b80b33dc1036
https://github.com/scikit-learn/scikit-learn/commit/4ab60559c8795ed92e7084d…
Author: Nicolas Hug <contact(a)nicolas-hug.com>
Date: 2018-11-20 (Tue, 20 Nov 2018)
Changed paths:
M sklearn/ensemble/forest.py
M sklearn/ensemble/gradient_boosting.py
M sklearn/tree/tree.py
Log Message:
-----------
MNT Change deprecation for min_impurity_split from removal to changing the default (#12400)
Commit: d25da1be2054170034548b63ce87bd459ed8bee0
https://github.com/scikit-learn/scikit-learn/commit/d25da1be2054170034548b6…
Author: Thomas Moreau <thomas.moreau.2010(a)gmail.com>
Date: 2018-11-20 (Tue, 20 Nov 2018)
Changed paths:
M README.rst
M benchmarks/bench_covertype.py
M benchmarks/bench_mnist.py
M benchmarks/bench_plot_nmf.py
M benchmarks/bench_rcv1_logreg_convergence.py
M benchmarks/bench_saga.py
M benchmarks/bench_tsne_mnist.py
M build_tools/circle/build_doc.sh
M doc/modules/classes.rst
M doc/modules/model_persistence.rst
M doc/tutorial/basic/tutorial.rst
M doc/whats_new/v0.20.rst
M examples/applications/wikipedia_principal_eigenvector.py
M examples/cluster/plot_feature_agglomeration_vs_univariate_selection.py
M examples/compose/plot_compare_reduction.py
M sklearn/cluster/k_means_.py
M sklearn/cluster/mean_shift_.py
M sklearn/compose/_column_transformer.py
M sklearn/covariance/graph_lasso_.py
M sklearn/datasets/california_housing.py
M sklearn/datasets/covtype.py
M sklearn/datasets/kddcup99.py
M sklearn/datasets/lfw.py
M sklearn/datasets/olivetti_faces.py
M sklearn/datasets/rcv1.py
M sklearn/datasets/species_distributions.py
M sklearn/datasets/svmlight_format.py
M sklearn/datasets/twenty_newsgroups.py
M sklearn/decomposition/dict_learning.py
M sklearn/decomposition/online_lda.py
M sklearn/ensemble/bagging.py
M sklearn/ensemble/base.py
M sklearn/ensemble/forest.py
M sklearn/ensemble/partial_dependence.py
M sklearn/ensemble/tests/test_bagging.py
M sklearn/ensemble/tests/test_forest.py
M sklearn/ensemble/voting_classifier.py
M sklearn/feature_selection/rfe.py
M sklearn/linear_model/base.py
M sklearn/linear_model/coordinate_descent.py
M sklearn/linear_model/least_angle.py
M sklearn/linear_model/logistic.py
M sklearn/linear_model/omp.py
M sklearn/linear_model/stochastic_gradient.py
M sklearn/linear_model/tests/test_sgd.py
M sklearn/linear_model/theil_sen.py
M sklearn/manifold/mds.py
M sklearn/metrics/pairwise.py
M sklearn/metrics/tests/test_score_objects.py
M sklearn/model_selection/_search.py
M sklearn/model_selection/_validation.py
M sklearn/multiclass.py
M sklearn/multioutput.py
M sklearn/neighbors/base.py
M sklearn/neighbors/tests/test_kde.py
M sklearn/neighbors/tests/test_neighbors.py
M sklearn/pipeline.py
M sklearn/tests/test_docstring_parameters.py
M sklearn/tests/test_multioutput.py
M sklearn/tests/test_pipeline.py
M sklearn/tests/test_site_joblib.py
M sklearn/utils/__init__.py
M sklearn/utils/_joblib.py
M sklearn/utils/estimator_checks.py
M sklearn/utils/testing.py
M sklearn/utils/tests/test_estimator_checks.py
M sklearn/utils/tests/test_utils.py
M sklearn/utils/tests/test_validation.py
M sklearn/utils/validation.py
Log Message:
-----------
FIX make joblib utils private, and remove mentions of externals.joblib (#12345)
Commit: ac327c5ad66fa3d4eb607d007e3684dec872d49a
https://github.com/scikit-learn/scikit-learn/commit/ac327c5ad66fa3d4eb607d0…
Author: Peter Hausamann <phausamann(a)users.noreply.github.com>
Date: 2018-11-20 (Tue, 20 Nov 2018)
Changed paths:
M doc/developers/advanced_installation.rst
Log Message:
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[MRG] DOC Windows build dependencies (#12615)
Commit: 0b8650ab211d1cf0fb0dd8996e2e7d2b32a85a07
https://github.com/scikit-learn/scikit-learn/commit/0b8650ab211d1cf0fb0dd89…
Author: Andreas Mueller <t3kcit(a)gmail.com>
Date: 2018-11-20 (Tue, 20 Nov 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/metrics/pairwise.py
M sklearn/metrics/tests/test_pairwise.py
Log Message:
-----------
[MRG] set blockwise diagonals to zero for euclidean distance (#12612)
Commit: 104f6847919a0a95daff711dcdc5e0722e4a3fce
https://github.com/scikit-learn/scikit-learn/commit/104f6847919a0a95daff711…
Author: Andreas Mueller <t3kcit(a)gmail.com>
Date: 2018-11-21 (Wed, 21 Nov 2018)
Changed paths:
M doc/whats_new/_contributors.rst
M doc/whats_new/v0.20.rst
M sklearn/utils/tests/test_validation.py
M sklearn/utils/validation.py
Log Message:
-----------
FIX check_array dtype check for pandas series (#12625)
Commit: e170d479acff31aadd9d2ab404952b23f7994aab
https://github.com/scikit-learn/scikit-learn/commit/e170d479acff31aadd9d2ab…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2018-11-21 (Wed, 21 Nov 2018)
Changed paths:
M doc/whats_new/v0.20.rst
Log Message:
-----------
DOC whats new tweaks for 0.20.1
Commit: 18d38ee6a570769578dc5d1f1340fd8ae054d44b
https://github.com/scikit-learn/scikit-learn/commit/18d38ee6a570769578dc5d1…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2018-11-21 (Wed, 21 Nov 2018)
Changed paths:
M doc/whats_new/v0.21.rst
Log Message:
-----------
DOC what's new 0.21 tweaks
Commit: 565262ac4317c9dad7bc800762b537d849d8bd01
https://github.com/scikit-learn/scikit-learn/commit/565262ac4317c9dad7bc800…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2018-11-21 (Wed, 21 Nov 2018)
Changed paths:
M build_tools/circle/build_test_pypy.sh
Log Message:
-----------
BLD PyPy needs joblib (#12629)
Commit: a816af7d1d89a9a62f523b81be24d5058928ddd8
https://github.com/scikit-learn/scikit-learn/commit/a816af7d1d89a9a62f523b8…
Author: Adrin Jalali <adrin.jalali(a)gmail.com>
Date: 2018-11-21 (Wed, 21 Nov 2018)
Changed paths:
M doc/modules/compose.rst
M doc/whats_new/v0.20.rst
M sklearn/compose/_column_transformer.py
M sklearn/compose/tests/test_column_transformer.py
Log Message:
-----------
API Change the tuple order in make_column_transformer (#12626)
Commit: 775bef33c06e21a5f6b730f8df80772c7a11e348
https://github.com/scikit-learn/scikit-learn/commit/775bef33c06e21a5f6b730f…
Author: Andreas Mueller <t3kcit(a)gmail.com>
Date: 2018-11-21 (Wed, 21 Nov 2018)
Changed paths:
M sklearn/covariance/graph_lasso_.py
Log Message:
-----------
hotfix for segfault on mkl (#12637)
* probably fixing the segfault
* Trigger CircleCI [doc build]
* move isfinite out one level[doc build]
* slightly faster finiteness check
Commit: 12384a1f39c43a4acf2779a5f2755301908a8aa0
https://github.com/scikit-learn/scikit-learn/commit/12384a1f39c43a4acf2779a…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-11-22 (Thu, 22 Nov 2018)
Changed paths:
M sklearn/datasets/openml.py
Log Message:
-----------
MNT silence a LGTM alert (#12633)
Commit: f6f7e3cfd365b39d4bc5a98cc8914c3a528477d6
https://github.com/scikit-learn/scikit-learn/commit/f6f7e3cfd365b39d4bc5a98…
Author: Marc Torrellas <marc.torsoc(a)gmail.com>
Date: 2018-11-21 (Wed, 21 Nov 2018)
Changed paths:
M doc/whats_new/v0.21.rst
M sklearn/model_selection/_validation.py
M sklearn/model_selection/tests/test_validation.py
Log Message:
-----------
[MRG + 2] Print train scores in _fit_and_score (#12613)
* print train scores when verbose > 3 in _fit_and_score
* train_scores computed if verbose > 3, and 3 decimals places only
* flake8 warnings solved
* print train score if return_train_score
test coverage increased
* added test for multimetric;
tests cleaned using pytest parametrize
* fixing failed tests for python2...
* revert changes in _scorer
* modified whats_new
* modified whats_new again
Commit: c1f58745be7c4923cf0a666f1c6bf052042f131e
https://github.com/scikit-learn/scikit-learn/commit/c1f58745be7c4923cf0a666…
Author: Nicolas Hug <contact(a)nicolas-hug.com>
Date: 2018-11-21 (Wed, 21 Nov 2018)
Changed paths:
M doc/modules/linear_model.rst
M doc/tutorial/statistical_inference/supervised_learning.rst
M doc/whats_new/v0.21.rst
M examples/linear_model/plot_logistic_l1_l2_sparsity.py
M sklearn/linear_model/logistic.py
M sklearn/linear_model/sag.py
M sklearn/linear_model/sag_fast.pyx
M sklearn/linear_model/tests/test_logistic.py
Log Message:
-----------
[MRG] Add elastic net penalty to LogisticRegression (#11646)
* First draft on elasticnet penaly for LogisticRegression
* Some basic tests
* Doc update
* First draft for LogisticRegressionCV.
It seems to be working for binary classification and for multiclass when
multi_class='ovr'. I'm having a hard time figuring out the intricacies
of multi_class='multinomial'.
* Changed default to None for l1_ratio.
added warning message is user sets l1_ratio while penalty is not
elastic-net
* Some more doc
* Updated example to plot elastic net sparsity
* Fixed flake8
* Fixed test by not modifying attribute in fit
* Fixed doc issues
* WIP
* Partially fixed logistic_reg_CV for multinomial.
Also added some comments that are hopefully clear.
Still need to fix refit=False
* Fixed doc issue
* WIP
* Fixed test for refit=False in LogisticRegressionCV
* Fixed Python 2 numpy version issue
* minor doc updates
* Weird doc error...
* Added test to ensure that elastic net is at least as good as L1 or L2
once l1_ratio has been optimized with grid search
Also addressed minor reviews
* Fixed test
* addressed comments
* Added back ignore warning on tests
* Added a functional test
* Scale data in test... Now failing
* elastic-net --> elasticnet
* Updated doc for some attributes and checked their shape in tests
* Added l1_ratio dimension to coefs_paths and scores attr
* improve example + fix test
* FIX incorrect lagged_update in SAGA
* Add non-regression test for SAGA's bug
* FIX flake8 and warning
* Re fixed warning
* Updated some tests
* Addressed comments
* more comments and added dimension to LogisticRegressionCV.n_iter_ attribute
* Updated whatsnew for 0.21
* better doc shape looks
* Fixed whatnew entry after merges
* Added dot
* Addressed comments + standardized optional default param docstrings
* Addessed comments
* use swapaxes instead of unsupported moveaxis (hopefully fixes tests)
Commit: 5bb13e5c715cf1845475cf45ce5cbb277e1e6fc4
https://github.com/scikit-learn/scikit-learn/commit/5bb13e5c715cf1845475cf4…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2018-11-22 (Thu, 22 Nov 2018)
Changed paths:
M doc/whats_new/v0.20.rst
Log Message:
-----------
DOC add date for 0.20.0 release
Commit: 61d355a12bb1211e6ad1e7924984ea22a0e386d0
https://github.com/scikit-learn/scikit-learn/commit/61d355a12bb1211e6ad1e79…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-11-22 (Thu, 22 Nov 2018)
Changed paths:
M doc/whats_new/v0.20.rst
Log Message:
-----------
DOC Note that we have API changes in 0.20.1 (#12634)
Commit: b5d0afa5a72914671df834d728361c9b671d66bb
https://github.com/scikit-learn/scikit-learn/commit/b5d0afa5a72914671df834d…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-11-22 (Thu, 22 Nov 2018)
Changed paths:
M doc/index.rst
Log Message:
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DOC update news, make 0.20 link to 0.20.0
Commit: 8307b526b46e62e1e1d26bed312d6e3521a275da
https://github.com/scikit-learn/scikit-learn/commit/8307b526b46e62e1e1d26be…
Author: Andreas Mueller <t3kcit(a)gmail.com>
Date: 2018-11-22 (Thu, 22 Nov 2018)
Changed paths:
M sklearn/neighbors/base.py
Log Message:
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don't set check_pickle on new joblib on python2.7 (#12645)
Commit: 62098752e72eec9ff7a45dad5a6e86667586e2e4
https://github.com/scikit-learn/scikit-learn/commit/62098752e72eec9ff7a45da…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-11-22 (Thu, 22 Nov 2018)
Changed paths:
M doc/whats_new/v0.20.rst
Log Message:
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DOC Add contributors for 0.20.1
Commit: 57961ec2ee33b03c05cd22b84d3280742f89d3d5
https://github.com/scikit-learn/scikit-learn/commit/57961ec2ee33b03c05cd22b…
Author: Paul Paczuski <pavopax(a)users.noreply.github.com>
Date: 2018-11-22 (Thu, 22 Nov 2018)
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Doc: minor word change (#12646)
Commit: 70f170dedf2927c2d805144425522459d92700a7
https://github.com/scikit-learn/scikit-learn/commit/70f170dedf2927c2d805144…
Author: Andreas Mueller <t3kcit(a)gmail.com>
Date: 2018-11-23 (Fri, 23 Nov 2018)
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M doc/whats_new/v0.20.rst
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DOC fix minor sphinx issues (#12653)
Commit: 1414efb7849e70156ebbcfe88eaa598b18111a24
https://github.com/scikit-learn/scikit-learn/commit/1414efb7849e70156ebbcfe…
Author: Joris Van den Bossche <jorisvandenbossche(a)gmail.com>
Date: 2018-11-23 (Fri, 23 Nov 2018)
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DOC: start section for the 0.20.2 bugfix notes (#12664)
Commit: 96a804ba5da0391e9a7dc18d1fe4cda7767767af
https://github.com/scikit-learn/scikit-learn/commit/96a804ba5da0391e9a7dc18…
Author: Albert Thomas <albertthomas88(a)gmail.com>
Date: 2018-11-24 (Sat, 24 Nov 2018)
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M examples/plot_anomaly_comparison.py
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DOC Fix links in anomaly detection example (#12665)
Commit: e6e8345248c09214ad1946c8549204dbbcbaf8a6
https://github.com/scikit-learn/scikit-learn/commit/e6e8345248c09214ad1946c…
Author: Loïc Estève <loic.esteve(a)ymail.com>
Date: 2018-11-24 (Sat, 24 Nov 2018)
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M examples/applications/plot_stock_market.py
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EXA remove unused variables. (#12647)
The data comes from static CSVs that cover 2003-01-01 to 2007-12-31.
Commit: 9dfe8768c8256baea176a57c6a9a2891b0a0690f
https://github.com/scikit-learn/scikit-learn/commit/9dfe8768c8256baea176a57…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-11-24 (Sat, 24 Nov 2018)
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M examples/applications/plot_stock_market.py
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MNT Unused import
Commit: fe35e253aeb37057af9ae242700fd5c2e6f20c25
https://github.com/scikit-learn/scikit-learn/commit/fe35e253aeb37057af9ae24…
Author: Nicolas Hug <contact(a)nicolas-hug.com>
Date: 2018-11-25 (Sun, 25 Nov 2018)
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M sklearn/linear_model/tests/test_logistic.py
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[MRG] Fixed randomness of test_logreg_cv_penalty (#12624)
* fixed randomness of test_logreg_cv_penalty
* Added comment about warm-starting coefficients
Commit: 32c676e41d91291b34e38cc5ced8ebb68deab799
https://github.com/scikit-learn/scikit-learn/commit/32c676e41d91291b34e38cc…
Author: Sam Waterbury <samwaterbury1(a)gmail.com>
Date: 2018-11-26 (Mon, 26 Nov 2018)
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M sklearn/neural_network/multilayer_perceptron.py
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DOC Updated MLP partial_fit documentation (#12618)
Commit: 6f9b1b6284427f90f17cc69246ba52845a0460b1
https://github.com/scikit-learn/scikit-learn/commit/6f9b1b6284427f90f17cc69…
Author: Olivier Grisel <olivier.grisel(a)ensta.org>
Date: 2018-11-26 (Mon, 26 Nov 2018)
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DOC use twine to upload wheels to pypi (#12661)
Commit: 1b90237b45dfa1652831cfe72bd4b29a31b070ec
https://github.com/scikit-learn/scikit-learn/commit/1b90237b45dfa1652831cfe…
Author: Thomas Fan <thomasjpfan(a)gmail.com>
Date: 2018-11-27 (Tue, 27 Nov 2018)
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M doc/whats_new/v0.20.rst
M sklearn/pipeline.py
M sklearn/tests/test_pipeline.py
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FIX Pipeline steps incorrectly updated with passthrough step (#12659)
Commit: c49a5bf8a8f550a8175b5f84a5842ab4b7093700
https://github.com/scikit-learn/scikit-learn/commit/c49a5bf8a8f550a8175b5f8…
Author: Marc Torrellas <marc.torsoc(a)gmail.com>
Date: 2018-11-27 (Tue, 27 Nov 2018)
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M doc/whats_new/v0.21.rst
M sklearn/model_selection/_search.py
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DOC Fixed whatsnew and tiny docstring fix (#12669)
Commit: aa331eefb08dd1cc37bc91f49332fae46e6aa3aa
https://github.com/scikit-learn/scikit-learn/commit/aa331eefb08dd1cc37bc91f…
Author: josephsalmon <josephsalmon(a)users.noreply.github.com>
Date: 2018-11-27 (Tue, 27 Nov 2018)
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M examples/mixture/plot_gmm_covariances.py
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EXA improving examples/mixture/plot_gmm_covariances.py visualisation (#12683)
Commit: 69c5dd9d8546c67282d30a22ceab9a1a4325d0b7
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Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-11-27 (Tue, 27 Nov 2018)
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M sklearn/model_selection/tests/test_split.py
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TST Specify random seed in test_shuffle_kfold_stratifiedkfold_reproducibility (#12674)
Commit: fa98a72dcca91920e5e807fdc1ce5b54486ad652
https://github.com/scikit-learn/scikit-learn/commit/fa98a72dcca91920e5e807f…
Author: Bartosz Michałowski <37243818+jaskola8(a)users.noreply.github.com>
Date: 2018-11-28 (Wed, 28 Nov 2018)
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M sklearn/cluster/tests/test_mean_shift.py
M sklearn/compose/tests/test_column_transformer.py
M sklearn/datasets/tests/test_base.py
M sklearn/decomposition/tests/test_nmf.py
M sklearn/decomposition/tests/test_sparse_pca.py
M sklearn/ensemble/tests/test_bagging.py
M sklearn/ensemble/tests/test_forest.py
M sklearn/feature_extraction/tests/test_dict_vectorizer.py
M sklearn/feature_extraction/tests/test_image.py
M sklearn/feature_extraction/tests/test_text.py
M sklearn/feature_selection/tests/test_from_model.py
M sklearn/feature_selection/tests/test_mutual_info.py
M sklearn/gaussian_process/tests/test_gpc.py
M sklearn/gaussian_process/tests/test_gpr.py
M sklearn/linear_model/tests/test_coordinate_descent.py
M sklearn/linear_model/tests/test_huber.py
M sklearn/linear_model/tests/test_least_angle.py
M sklearn/linear_model/tests/test_omp.py
M sklearn/linear_model/tests/test_sgd.py
M sklearn/metrics/cluster/tests/test_unsupervised.py
M sklearn/metrics/tests/test_score_objects.py
M sklearn/model_selection/tests/test_search.py
M sklearn/model_selection/tests/test_split.py
M sklearn/model_selection/tests/test_validation.py
M sklearn/neighbors/tests/test_neighbors.py
M sklearn/neural_network/tests/test_mlp.py
M sklearn/neural_network/tests/test_rbm.py
M sklearn/neural_network/tests/test_stochastic_optimizers.py
M sklearn/preprocessing/tests/test_data.py
M sklearn/preprocessing/tests/test_imputation.py
M sklearn/svm/tests/test_bounds.py
M sklearn/svm/tests/test_sparse.py
M sklearn/svm/tests/test_svm.py
M sklearn/tests/test_base.py
M sklearn/tests/test_common.py
M sklearn/tests/test_discriminant_analysis.py
M sklearn/tests/test_impute.py
M sklearn/tests/test_isotonic.py
M sklearn/tests/test_kernel_approximation.py
M sklearn/tests/test_metaestimators.py
M sklearn/tests/test_multiclass.py
M sklearn/tests/test_multioutput.py
M sklearn/tests/test_pipeline.py
M sklearn/tree/tests/test_tree.py
M sklearn/utils/estimator_checks.py
M sklearn/utils/mocking.py
M sklearn/utils/tests/test_extmath.py
M sklearn/utils/tests/test_metaestimators.py
M sklearn/utils/tests/test_multiclass.py
M sklearn/utils/tests/test_murmurhash.py
M sklearn/utils/tests/test_validation.py
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MNT Replaced all occurrences of assert_true and assert_false with assert (#12588)
Commit: dbd28e70be8366c4f789500c988032e2bf1024ec
https://github.com/scikit-learn/scikit-learn/commit/dbd28e70be8366c4f789500…
Author: Adrin Jalali <adrin.jalali(a)gmail.com>
Date: 2018-11-29 (Thu, 29 Nov 2018)
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M doc/developers/contributing.rst
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DOC add joblib to doc-build deps (#12691)
Commit: 7f5aa85db6ce8a0204c9efc996a3c03378a94b15
https://github.com/scikit-learn/scikit-learn/commit/7f5aa85db6ce8a0204c9efc…
Author: Thomas Fan <thomasjpfan(a)gmail.com>
Date: 2018-11-30 (Fri, 30 Nov 2018)
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M doc/whats_new/v0.20.rst
M sklearn/neighbors/dist_metrics.pyx
M sklearn/neighbors/tests/test_dist_metrics.py
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FIX Adapts cdist jaccard to scipy 1.2.0 (#12692)
Commit: bfa3aaaa8e8bbe32fa314b3b5aef04712922dac7
https://github.com/scikit-learn/scikit-learn/commit/bfa3aaaa8e8bbe32fa314b3…
Author: Shivam Kotwalia <shivamkotwalia(a)gmail.com>
Date: 2018-11-30 (Fri, 30 Nov 2018)
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M doc/developers/performance.rst
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DOC Fix joblib URL (#12698)
Commit: ccf0d9286dfb8e125dcbeb038076f659fdac22a3
https://github.com/scikit-learn/scikit-learn/commit/ccf0d9286dfb8e125dcbeb0…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-11-30 (Fri, 30 Nov 2018)
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M sklearn/utils/testing.py
Log Message:
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MNT Minor code refactoring in utils.testing (#12688)
Commit: 92e8fc910ff1831c648d3568193ff154ffee3ee0
https://github.com/scikit-learn/scikit-learn/commit/92e8fc910ff1831c648d356…
Author: Dan Stine <dstine(a)users.noreply.github.com>
Date: 2018-12-03 (Mon, 03 Dec 2018)
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M sklearn/feature_extraction/text.py
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DOC Update TfidfVectorizer analyzer documentation to match CountVectorizer (#12713)
Commit: aae4e337d2c93d9005f5d13c62e80209740dce6a
https://github.com/scikit-learn/scikit-learn/commit/aae4e337d2c93d9005f5d13…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-12-03 (Mon, 03 Dec 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/compose/_column_transformer.py
M sklearn/compose/tests/test_column_transformer.py
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FIX Fix error in make_column_transformer when columns is pandas.Index (#12704)
Fixes #12703
Commit: 4f5dd77d19fc682e5a04f56791e3fd17d1d71e08
https://github.com/scikit-learn/scikit-learn/commit/4f5dd77d19fc682e5a04f56…
Author: Joris Van den Bossche <jorisvandenbossche(a)gmail.com>
Date: 2018-12-03 (Mon, 03 Dec 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/utils/tests/test_validation.py
M sklearn/utils/validation.py
Log Message:
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BUG: fix check_array on pandas Series with custom dtype (eg categorical) (#12706)
Closes #12699. Related to #12625
Commit: 7f6cb8330a2da1f9810a4f89d4b47ca61a6918b6
https://github.com/scikit-learn/scikit-learn/commit/7f6cb8330a2da1f9810a4f8…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2018-12-04 (Tue, 04 Dec 2018)
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M build_tools/generate_authors_table.py
M doc/authors.rst
Log Message:
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DOC regenerate authors.rst after Adrin has joined (#12719)
Commit: f70b1ff3f7ed310f9c9531c23f508103aa31d082
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Author: Adrin Jalali <adrin.jalali(a)gmail.com>
Date: 2018-12-06 (Thu, 06 Dec 2018)
Changed paths:
M examples/compose/plot_transformed_target.py
M examples/neighbors/plot_kde_1d.py
M examples/plot_johnson_lindenstrauss_bound.py
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EXA change normed to density in matplotlib calls in examples (#12718)
Commit: 1cb56ba882a92e68c26cdc6595d2aa14dce1acf5
https://github.com/scikit-learn/scikit-learn/commit/1cb56ba882a92e68c26cdc6…
Author: Greg Gandenberger <ggandenberger(a)shoprunner.com>
Date: 2018-12-06 (Thu, 06 Dec 2018)
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M doc/modules/model_evaluation.rst
Log Message:
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DOC Use defined notation for precision and recall (#12726)
Commit: 597125dc9a2956fc184cc5c9047c536e143fd56d
https://github.com/scikit-learn/scikit-learn/commit/597125dc9a2956fc184cc5c…
Author: William de Vazelhes <31916524+wdevazelhes(a)users.noreply.github.com>
Date: 2018-12-07 (Fri, 07 Dec 2018)
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M doc/whats_new/v0.21.rst
M sklearn/manifold/t_sne.py
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ENH Replacing np.where lookup by an inverted index (#9907)
Commit: 6b1d8e5e1404853eece7bf56bde00d3683840a29
https://github.com/scikit-learn/scikit-learn/commit/6b1d8e5e1404853eece7bf5…
Author: William de Vazelhes <31916524+wdevazelhes(a)users.noreply.github.com>
Date: 2018-12-07 (Fri, 07 Dec 2018)
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M doc/whats_new/v0.21.rst
M sklearn/discriminant_analysis.py
M sklearn/tests/test_discriminant_analysis.py
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FIX warns when invalid n_components in LinearDiscriminantAnalysis (#11526)
Commit: 1a0c1c08b53eaca848e9905f1daabff6fd04b5b6
https://github.com/scikit-learn/scikit-learn/commit/1a0c1c08b53eaca848e9905…
Author: Tom Dupré la Tour <tom.dupre-la-tour(a)m4x.org>
Date: 2018-12-08 (Sat, 08 Dec 2018)
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M doc/whats_new/v0.21.rst
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MNT cleaning whats_new
Commit: 23c342ae69e736c4a51d71b45872ecf86a2ff3ad
https://github.com/scikit-learn/scikit-learn/commit/23c342ae69e736c4a51d71b…
Author: jeremiedbb <34657725+jeremiedbb(a)users.noreply.github.com>
Date: 2018-12-09 (Sun, 09 Dec 2018)
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M sklearn/metrics/pairwise_fast.pyx
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MNT Remove unnecessary custom nested fused types by builtin floating (#12737)
Commit: 654c452291996c019158ab00afd07a712a9d2901
https://github.com/scikit-learn/scikit-learn/commit/654c452291996c019158ab0…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2018-12-09 (Sun, 09 Dec 2018)
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M doc/modules/model_evaluation.rst
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DOC Revert "DOC Use defined notation for precision and recall (#12726)" (#12743)
Commit: 9a7e49f480aabfa26937fd99ee9aa31e09917b50
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Author: Roman Yurchak <rth.yurchak(a)pm.me>
Date: 2018-12-09 (Sun, 09 Dec 2018)
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M sklearn/feature_extraction/tests/test_text.py
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MAINT Use unicode in feature_extraction tests (#12709)
* Use unicode in feature_extraction tests
* Add a comment for the alef character
* Set the correct number of words in test_vectorizer_unicode
Commit: bf2f648639e92246c4b92ad039c9b086d6e6edce
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Author: Adrin Jalali <adrin.jalali(a)gmail.com>
Date: 2018-12-10 (Mon, 10 Dec 2018)
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M doc/modules/model_evaluation.rst
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DOC Fix math typo in model_evaluation's explained_variance (#12747)
Commit: 01b37f802939ad7088620172e17923d3a8d662e0
https://github.com/scikit-learn/scikit-learn/commit/01b37f802939ad708862017…
Author: Jan S <github_new(a)milania.de>
Date: 2018-12-10 (Mon, 10 Dec 2018)
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M sklearn/svm/base.py
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DOC Clarify what the decision function in SVM calculates (#12708)
Commit: 7fe3413475bf50683f821d296c2ca6cb525a7714
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Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-12-10 (Mon, 10 Dec 2018)
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M doc/modules/model_evaluation.rst
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Revert "DOC Fix math typo in model_evaluation's explained_variance (#12747)"
This reverts commit bf2f648639e92246c4b92ad039c9b086d6e6edce.
Commit: 3a884c5ee507f735e2df384727340c72c5219a8e
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Author: Albert Thomas <albertthomas88(a)gmail.com>
Date: 2018-12-11 (Tue, 11 Dec 2018)
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M sklearn/preprocessing/data.py
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DOC change "cumulative density" to "cumulative distribution" (#12754)
Commit: 3d5388edf150fe3c04d2a746457fc2df7d8596b1
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Author: Nicolas Hug <contact(a)nicolas-hug.com>
Date: 2018-12-13 (Thu, 13 Dec 2018)
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A doc/roadmap.rst
M doc/themes/scikit-learn/layout.html
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DOC Added roadmap.rst (#12761)
Commit: 72ba30060af168999b8442014da1aaefed1f450d
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Author: Emmanuel Arias <emmanuelarias30(a)gmail.com>
Date: 2018-12-13 (Thu, 13 Dec 2018)
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M doc/modules/model_evaluation.rst
M doc/tutorial/text_analytics/working_with_text_data.rst
M doc/whats_new/v0.21.rst
M sklearn/metrics/classification.py
M sklearn/metrics/tests/test_classification.py
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ENH Use accuracy instead of micro-average in classification_report (#12758)
Commit: 10339f7f0204db03d05036a5b79e5a52115787ea
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Author: Muhammad Hassaan Rafique <hassaan_rafique(a)hotmail.com>
Date: 2018-12-13 (Thu, 13 Dec 2018)
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M doc/modules/linear_model.rst
Log Message:
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Update linear_model.rst (#12735)
* Update for Logistic-Regression Table Summary for L-BFGS
* Update for linear_model.rst Logistic-Regression L-BFGS summary.
* Update for Logistic-Regression Doc.
* Logistic-Regression Update
* Update linear_model.rst
* Update jnothman comments
* Update jnothman comments
* Update for jnothman comments.
* test
* test2
* test3
* test4
* Update for Comments from amueller and jnothman
* Update for Comments from amueller and jnothman
Commit: 5be8507dcb79f97d4032c12a3adfec23e2cdf4d7
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Author: amourav <31961506+amourav(a)users.noreply.github.com>
Date: 2018-12-13 (Thu, 13 Dec 2018)
Changed paths:
M sklearn/utils/testing.py
Log Message:
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MNT Deprecate assert_true and assert_false (#12717)
Commit: 4603e481e9ac67eaf906ae5936263b675ba9bc9c
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Author: Andreas Mueller <t3kcit(a)gmail.com>
Date: 2018-12-14 (Fri, 14 Dec 2018)
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M doc/modules/linear_model.rst
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DOC Explain solver choices for LogisticRegression (#12768)
Commit: 2bd87f6ed8d36f89cab73552665e4e59e892262b
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Author: Adrin Jalali <adrin.jalali(a)gmail.com>
Date: 2018-12-14 (Fri, 14 Dec 2018)
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M .travis.yml
M appveyor.yml
M build_tools/travis/install.sh
M conftest.py
M examples/model_selection/plot_precision_recall.py
M setup.py
M sklearn/base.py
M sklearn/calibration.py
M sklearn/cluster/tests/test_k_means.py
M sklearn/datasets/covtype.py
M sklearn/datasets/kddcup99.py
M sklearn/datasets/mldata.py
M sklearn/datasets/openml.py
M sklearn/datasets/rcv1.py
M sklearn/datasets/species_distributions.py
M sklearn/datasets/tests/test_svmlight_format.py
R sklearn/externals/funcsigs.py
M sklearn/feature_extraction/tests/test_text.py
M sklearn/gaussian_process/kernels.py
M sklearn/gaussian_process/tests/test_kernels.py
M sklearn/model_selection/_search.py
M sklearn/model_selection/_split.py
M sklearn/model_selection/tests/test_search.py
M sklearn/preprocessing/_discretization.py
M sklearn/preprocessing/data.py
M sklearn/preprocessing/tests/test_data.py
M sklearn/svm/tests/test_svm.py
M sklearn/tests/test_docstring_parameters.py
M sklearn/utils/estimator_checks.py
M sklearn/utils/extmath.py
M sklearn/utils/fixes.py
M sklearn/utils/testing.py
M sklearn/utils/tests/test_deprecation.py
M sklearn/utils/tests/test_estimator_checks.py
M sklearn/utils/tests/test_extmath.py
M sklearn/utils/tests/test_fixes.py
M sklearn/utils/tests/test_validation.py
M sklearn/utils/validation.py
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Remove python < 3.5 from CI (#12746)
Commit: 9ddf34abaad7bbc91980ad3c5e072a400015ece2
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Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-12-14 (Fri, 14 Dec 2018)
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M sklearn/metrics/regression.py
Log Message:
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MNT flake8 in r2_score examples (#12773)
Commit: 419c6cc456f0353d22d701ba6e1110a2bdef219a
https://github.com/scikit-learn/scikit-learn/commit/419c6cc456f0353d22d701b…
Author: Adrin Jalali <adrin.jalali(a)gmail.com>
Date: 2018-12-14 (Fri, 14 Dec 2018)
Changed paths:
M .circleci/config.yml
Log Message:
-----------
MNT hotfix circle-ci job dependency (#12780)
Commit: 0be2d7356d6c021d629464d15c00d48fa395ba90
https://github.com/scikit-learn/scikit-learn/commit/0be2d7356d6c021d629464d…
Author: Adrin Jalali <adrin.jalali(a)gmail.com>
Date: 2018-12-14 (Fri, 14 Dec 2018)
Changed paths:
M README.rst
M doc/developers/contributing.rst
M doc/install.rst
Log Message:
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DOC update min required versions in some remaining docs (#12778)
Commit: f388c837a7c76dda8083d459e0d5757e66f14d19
https://github.com/scikit-learn/scikit-learn/commit/f388c837a7c76dda8083d45…
Author: Adrin Jalali <adrin.jalali(a)gmail.com>
Date: 2018-12-14 (Fri, 14 Dec 2018)
Changed paths:
M README.rst
Log Message:
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DOC remove python2.7 from badge list in README (#12781)
Commit: 3cb4a528323ed30149ab0935ad18ca730bd09e2e
https://github.com/scikit-learn/scikit-learn/commit/3cb4a528323ed30149ab093…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-12-14 (Fri, 14 Dec 2018)
Changed paths:
M .circleci/config.yml
Log Message:
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MNT Don't persist doc in doc-min-dependencies job (#12782)
Commit: 52e9cc5add6ffe6398fed529f5f110f0961ad28a
https://github.com/scikit-learn/scikit-learn/commit/52e9cc5add6ffe6398fed52…
Author: Feda Curic <feda.curic(a)gmail.com>
Date: 2018-12-14 (Fri, 14 Dec 2018)
Changed paths:
M examples/text/plot_document_classification_20newsgroups.py
Log Message:
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EXA Avoiding TypeError when using --all_categories in plot_document_classification_20newsgroups.py (#12770)
Commit: b8e751abf1aaaf9340e7666a934c82535e96cfd5
https://github.com/scikit-learn/scikit-learn/commit/b8e751abf1aaaf9340e7666…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-12-15 (Sat, 15 Dec 2018)
Changed paths:
M doc/whats_new/v0.20.rst
Log Message:
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DOC Remove what's new entry for unreleased feature
Commit: 8f8f3c8374a029f45c57e296414aa3da8fe40561
https://github.com/scikit-learn/scikit-learn/commit/8f8f3c8374a029f45c57e29…
Author: Katrin Leinweber <9948149+katrinleinweber(a)users.noreply.github.com>
Date: 2018-12-15 (Sat, 15 Dec 2018)
Changed paths:
M doc/modules/clustering.rst
Log Message:
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DOC Hyperlink DOIs to preferred resolver (#12792)
Commit: 47bb3ac1ba74bb7c1a14e2165600f47b7f88eee2
https://github.com/scikit-learn/scikit-learn/commit/47bb3ac1ba74bb7c1a14e21…
Author: Reshama Shaikh <rs2715(a)stern.nyu.edu>
Date: 2018-12-15 (Sat, 15 Dec 2018)
Changed paths:
M doc/whats_new/v0.21.rst
M sklearn/metrics/classification.py
M sklearn/metrics/tests/test_classification.py
Log Message:
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API (0.21) Handling parameter labels removal from hamming_loss (#12656)
Commit: 037ee933af486a547ee0c70ea27cdbcdf811fa11
https://github.com/scikit-learn/scikit-learn/commit/037ee933af486a547ee0c70…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-12-15 (Sat, 15 Dec 2018)
Changed paths:
M doc/developers/contributing.rst
Log Message:
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DOC (0.21) update Circle CI doc
Commit: ff64eae03136a0e18ac2a85320871abd061b2b0b
https://github.com/scikit-learn/scikit-learn/commit/ff64eae03136a0e18ac2a85…
Author: adanhawth <36526095+adanhawth(a)users.noreply.github.com>
Date: 2018-12-16 (Sun, 16 Dec 2018)
Changed paths:
M doc/modules/model_evaluation.rst
Log Message:
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DOC Fix LaTeX text{} block escaping of underscores in doc-modules-model_evaluation.rst (#12788)
Commit: cd8fe168fbc2c5cfe1cb11a1cfbd7a1b7aec0acc
https://github.com/scikit-learn/scikit-learn/commit/cd8fe168fbc2c5cfe1cb11a…
Author: Reshama Shaikh <rs2715(a)stern.nyu.edu>
Date: 2018-12-17 (Mon, 17 Dec 2018)
Changed paths:
M sklearn/linear_model/logistic.py
Log Message:
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DOC Added description for classes_ in LogisticRegression/LogisticRegressionCV documentation (#12795)
Commit: 876b14907f96a42e63c3ef576a46755b120c3c01
https://github.com/scikit-learn/scikit-learn/commit/876b14907f96a42e63c3ef5…
Author: jeremiedbb <34657725+jeremiedbb(a)users.noreply.github.com>
Date: 2018-12-18 (Tue, 18 Dec 2018)
Changed paths:
M doc/whats_new/v0.20.rst
M sklearn/metrics/pairwise.py
M sklearn/metrics/tests/test_pairwise.py
Log Message:
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FIX pairwise distances with 'seuclidean' or 'mahalanobis' metrics (#12701)
Fixes #12672
Commit: 0554f10ebdff32fdd827d223e140040008e6ca4c
https://github.com/scikit-learn/scikit-learn/commit/0554f10ebdff32fdd827d22…
Author: Andreas Mueller <t3kcit(a)gmail.com>
Date: 2018-12-18 (Tue, 18 Dec 2018)
Changed paths:
M doc/modules/linear_model.rst
Log Message:
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DOC typo simple present singular for SGDClassifier in linear model docs (#12804)
Commit: cbdecca2ee3a99812544c8152dd04557b6680b7f
https://github.com/scikit-learn/scikit-learn/commit/cbdecca2ee3a99812544c81…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2018-12-19 (Wed, 19 Dec 2018)
Changed paths:
M doc/whats_new/v0.20.rst
Log Message:
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DOC reorder what's new 0.20.2
Commit: 5b4cffd4b4e13feaf8fa9177036afd583c72318b
https://github.com/scikit-learn/scikit-learn/commit/5b4cffd4b4e13feaf8fa917…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-12-18 (Tue, 18 Dec 2018)
Changed paths:
M sklearn/metrics/tests/test_pairwise.py
Log Message:
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TST np.vstack won't support generator in the future (#12816)
Commit: 893cecc571f12512839d99f217ba507ce8db9f2e
https://github.com/scikit-learn/scikit-learn/commit/893cecc571f12512839d99f…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-12-19 (Wed, 19 Dec 2018)
Changed paths:
M doc/whats_new/v0.20.rst
Log Message:
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DOC Update changed models for 0.20.2 (#12810)
Commit: fec534a9934d2fe94a259c4582b73cc32eb76e1a
https://github.com/scikit-learn/scikit-learn/commit/fec534a9934d2fe94a259c4…
Author: Reshama Shaikh <rs2715(a)stern.nyu.edu>
Date: 2018-12-19 (Wed, 19 Dec 2018)
Changed paths:
M sklearn/decomposition/dict_learning.py
Log Message:
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DOC Added example to decomposition.DictionaryLearning (#12799)
Commit: 2e98a9ca8d3549c7bf2a654590f2b9e76807253e
https://github.com/scikit-learn/scikit-learn/commit/2e98a9ca8d3549c7bf2a654…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2018-12-19 (Wed, 19 Dec 2018)
Changed paths:
M sklearn/decomposition/tests/test_pca.py
Log Message:
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Reduce precision requirements for float32 PCA (#12825)
Fixes #12823
Commit: 4a7075aa8841789eab30578f56bc48d8e6dc6042
https://github.com/scikit-learn/scikit-learn/commit/4a7075aa8841789eab30578…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-12-19 (Wed, 19 Dec 2018)
Changed paths:
M sklearn/decomposition/dict_learning.py
Log Message:
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Revert "DOC Added example to decomposition.DictionaryLearning (#12799)"
This reverts commit fec534a9934d2fe94a259c4582b73cc32eb76e1a.
Commit: 552a88e7f8898fd0f930f853648e8eb171e35142
https://github.com/scikit-learn/scikit-learn/commit/552a88e7f8898fd0f930f85…
Author: Reshama Shaikh <rs2715(a)stern.nyu.edu>
Date: 2018-12-19 (Wed, 19 Dec 2018)
Changed paths:
M CONTRIBUTING.md
M doc/developers/contributing.rst
Log Message:
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DOC Shorten and improve CONTRIBUTING.md (#12801)
* Reuse intro from contributing.rst
* Removed content already on rst
Simplified CONTRIBUTING.md by removing content that already
exists in contributing.rst. Added Code of Conduct reference
as seen in a few other CONTRIBUTING.md of popular libraries.
* Update contributing.rst
In shortening `CONTRIBUTING.md`, material deleted from `how to contribute` section are added onto `contributing.rst` if it doens't exist on the latter.
* added full link to .rst file + removed 'Full' in 'Full Docum...'
Commit: 2aa902207cf3f7c99c39da52f06cf4b55c5dc875
https://github.com/scikit-learn/scikit-learn/commit/2aa902207cf3f7c99c39da5…
Author: bertrandhaut <bertrand.haut(a)gmail.com>
Date: 2018-12-19 (Wed, 19 Dec 2018)
Changed paths:
M sklearn/model_selection/_search.py
Log Message:
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DOC bad link in ParameterGrid documentation (#12828)
Commit: 440c08684fb7edb31c7257e86b6f6481f69ba5c9
https://github.com/scikit-learn/scikit-learn/commit/440c08684fb7edb31c7257e…
Author: Dror Atariah <drorata(a)gmail.com>
Date: 2018-12-19 (Wed, 19 Dec 2018)
Changed paths:
M sklearn/model_selection/_split.py
M sklearn/model_selection/tests/test_split.py
Log Message:
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FIX Add more validation for size parameters in train_test_split (#12733)
* Fixed typo in an example
* Removed un-needed lines from example
* Added tests on the validity of parameters
* Fixed error msg for train_size issue
* Added tests to check the validation of test and train sizes
* Switched to parameterized test
* Fixed typo in error msg
* Swithced to pytest.raises
* Swithced to pytest.raises also when checking msg
* Improved the validity tests and their unit testing
Commit: 7478294f2a4f22614102888fb3dd98ff70456839
https://github.com/scikit-learn/scikit-learn/commit/7478294f2a4f22614102888…
Author: Andreas Mueller <andreas.mueller(a)columbia.edu>
Date: 2018-12-19 (Wed, 19 Dec 2018)
Changed paths:
M doc/index.rst
M doc/whats_new/v0.20.rst
Log Message:
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DOC Update what's new according to 0.20.X
Commit: 785b4b92bfe2ef457a7b2fd3e5361767235a88a3
https://github.com/scikit-learn/scikit-learn/commit/785b4b92bfe2ef457a7b2fd…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2018-12-19 (Wed, 19 Dec 2018)
Changed paths:
M doc/whats_new/v0.21.rst
Log Message:
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DOC add |Feature| tag in what's new
Commit: e73acef80de4159722b11e3cd6c20920382b9728
https://github.com/scikit-learn/scikit-learn/commit/e73acef80de4159722b11e3…
Author: Nicolas Hug <contact(a)nicolas-hug.com>
Date: 2018-12-19 (Wed, 19 Dec 2018)
Changed paths:
M doc/whats_new/v0.21.rst
M sklearn/ensemble/gradient_boosting.py
Log Message:
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FIX Fixed gradient computation in gradient boosting for multiclass classification (#12715)
* Fixed gradient update
* Added whatsnew entry
Commit: 55a98ab7e3b10966f6d00c3562f3a99896797964
https://github.com/scikit-learn/scikit-learn/commit/55a98ab7e3b10966f6d00c3…
Author: Nicolas Hug <contact(a)nicolas-hug.com>
Date: 2018-12-19 (Wed, 19 Dec 2018)
Changed paths:
M doc/modules/classes.rst
M doc/whats_new/v0.21.rst
M sklearn/linear_model/logistic.py
M sklearn/linear_model/tests/test_logistic.py
Log Message:
-----------
[MRG+1] Deprecated logistic_regression_path (#12821)
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#### Reference Issues/PRs
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Closes #12798
#### What does this implement/fix? Explain your changes.
This PR deprecates the use of `logistic_regression_path` and makes it private.
#### Any other comments?
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Commit: e6cbd267c94d94df95f5f96055a05f078fdd2143
https://github.com/scikit-learn/scikit-learn/commit/e6cbd267c94d94df95f5f96…
Author: Thomas Fan <thomasjpfan(a)gmail.com>
Date: 2018-12-20 (Thu, 20 Dec 2018)
Changed paths:
M sklearn/metrics/tests/test_common.py
Log Message:
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TST Adds multilabels permutation tests to metrics/test_common (#12803)
Commit: a50c03f975c4bbf306c5af1826f46ba5dc5230a0
https://github.com/scikit-learn/scikit-learn/commit/a50c03f975c4bbf306c5af1…
Author: Nicolas Hug <contact(a)nicolas-hug.com>
Date: 2018-12-19 (Wed, 19 Dec 2018)
Changed paths:
M doc/modules/compose.rst
M doc/modules/linear_model.rst
M doc/modules/model_evaluation.rst
M doc/modules/preprocessing.rst
M doc/tutorial/statistical_inference/model_selection.rst
M doc/tutorial/statistical_inference/supervised_learning.rst
M doc/tutorial/statistical_inference/unsupervised_learning.rst
M doc/whats_new/v0.21.rst
A examples/plot_changed_only_pprint_parameter.py
M sklearn/_config.py
M sklearn/base.py
M sklearn/cluster/hierarchical.py
M sklearn/decomposition/pca.py
M sklearn/discriminant_analysis.py
M sklearn/ensemble/forest.py
M sklearn/feature_extraction/dict_vectorizer.py
M sklearn/impute.py
M sklearn/kernel_approximation.py
M sklearn/linear_model/coordinate_descent.py
M sklearn/linear_model/passive_aggressive.py
M sklearn/linear_model/perceptron.py
M sklearn/metrics/classification.py
M sklearn/neural_network/rbm.py
M sklearn/preprocessing/_encoders.py
M sklearn/preprocessing/data.py
M sklearn/svm/classes.py
M sklearn/tests/test_base.py
M sklearn/tests/test_config.py
A sklearn/utils/_pprint.py
A sklearn/utils/tests/test_pprint.py
Log Message:
-----------
[MRG] Add pprint for estimators - continued (#11705)
* add pprint for estimators
* strip color from length, add color option
* Minor cleaning, fixes, factoring and docs
* Added some basic tests
* Fixed line length issue
* fixed flake8 and added visual test for review
* Fixed test
* Fixed Python 2 issues (inspect.signature import)
* Trying to fix flake8 again
* Added special repr for functions
* Added some other visual tests
* Changed _format_function in to _format_callable
because callable() returns True also for class objects (which we want to
reprensent with their name as well anyway)
* Consistent output in Python 2 and 3
* WIP
* Now using the builtin pprint module
* pep8
* Added changed_only param
* Fixed printing when string would fit in less than line width
* Fixed printing of steps parameter
* Fixed changed_only param for short estimators
* fixed pep8
* Added some more description in docstring
* changed_only is now an option from set_config()
* Put _pprint.py into sklearn/utils, added tests
* Added doctest NORMALIZE_WHITESPACE where needed
* Fixed tests
* fix test-doc
* fixing test that passed before....
* Fixed tests
* Added test for changed_only and long lines
* typo
* Added authors names
* Added license file
* Added ellipsis based on number of elements in sequence + added increasinly aggressive repr strategies
* Updated whatsnew
* dont use increaingly aggressive strategy
* Fixed tests
* Removed LICENSE file and put license text in _pprint.py
* fixed test_base
* Sorted parameters dictionary for consistent output in 3.5
* Actually using OrderedDict...
* Addressed comments
* Added test for NaN changed parameter
* Update whatsnew
* Added example to set_config()
* Removed example
* Added example in gallery
* Spelling
Commit: d011aedee6b8e6f395c6b93835765ebe93373f47
https://github.com/scikit-learn/scikit-learn/commit/d011aedee6b8e6f395c6b93…
Author: Adrin Jalali <adrin.jalali(a)gmail.com>
Date: 2018-12-20 (Thu, 20 Dec 2018)
Changed paths:
M .travis.yml
M build_tools/appveyor/requirements.txt
M build_tools/travis/install.sh
M sklearn/_build_utils/__init__.py
Log Message:
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CI move to the latest cython in ci (#12829)
Commit: 951c4f1a51ff57968d9b13581c6dbfd0cc8fe150
https://github.com/scikit-learn/scikit-learn/commit/951c4f1a51ff57968d9b135…
Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2018-12-20 (Thu, 20 Dec 2018)
Changed paths:
M .travis.yml
M build_tools/travis/after_success.sh
M build_tools/travis/install.sh
Log Message:
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BLD add a mac run on Travis (#12824)
Commit: de38dfc719b3b5a754df36c1585aa4cf810f4e3b
https://github.com/scikit-learn/scikit-learn/commit/de38dfc719b3b5a754df36c…
Author: Thomas Fan <thomasjpfan(a)gmail.com>
Date: 2018-12-21 (Fri, 21 Dec 2018)
Changed paths:
M sklearn/metrics/__init__.py
Log Message:
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MAINT Remove minor duplication in metrics.__init__ (#12851)
Commit: 0e5feb6bf7b402d89e7001ab29394e3c164ee460
https://github.com/scikit-learn/scikit-learn/commit/0e5feb6bf7b402d89e7001a…
Author: Dowon <akahard2dj(a)naver.com>
Date: 2018-12-23 (Sun, 23 Dec 2018)
Changed paths:
M sklearn/compose/_column_transformer.py
M sklearn/externals/_pilutil.py
M sklearn/feature_extraction/image.py
M sklearn/metrics/classification.py
M sklearn/metrics/pairwise.py
M sklearn/model_selection/_split.py
M sklearn/preprocessing/data.py
Log Message:
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DOC improving import convenience in class examples (#12846)
Commit: 19a7c08c828c9d94d717c3ee57eea21752a8cf3a
https://github.com/scikit-learn/scikit-learn/commit/19a7c08c828c9d94d717c3e…
Author: Emmanuel Arias <emmanuelarias30(a)gmail.com>
Date: 2018-12-23 (Sun, 23 Dec 2018)
Changed paths:
M sklearn/datasets/twenty_newsgroups.py
Log Message:
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DOC Document that fetch_20newsgroups also returns target_names (#12783)
Commit: 8d7e849428a4edd16c3e2a7dc8a088f108986a17
https://github.com/scikit-learn/scikit-learn/commit/8d7e849428a4edd16c3e2a7…
Author: Roman Yurchak <rth.yurchak(a)pm.me>
Date: 2018-12-23 (Sun, 23 Dec 2018)
Changed paths:
M benchmarks/bench_text_vectorizers.py
Log Message:
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BENCH Make benchmarks/bench_text_vectorizers.py run faster (#12842)
Commit: 3cb31de2e5b2f071a9c56ae7619f8f9881fce2a1
https://github.com/scikit-learn/scikit-learn/commit/3cb31de2e5b2f071a9c56ae…
Author: Dowon <akahard2dj(a)naver.com>
Date: 2018-12-27 (Thu, 27 Dec 2018)
Changed paths:
M doc/conf.py
M doc/themes/scikit-learn/layout.html
Log Message:
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DOC Resolve a missing link on the home page (#12847)
Commit: 7455078880c1f7f890ae0ae6b20efbc780cf964a
https://github.com/scikit-learn/scikit-learn/commit/7455078880c1f7f890ae0ae…
Author: Nicolas Hug <contact(a)nicolas-hug.com>
Date: 2018-12-27 (Thu, 27 Dec 2018)
Changed paths:
M doc/developers/performance.rst
Log Message:
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DOC Fixed typo in contributors guide (#12868)
Commit: b32076f5810bfb2a44bd5808143bab66366198bd
https://github.com/scikit-learn/scikit-learn/commit/b32076f5810bfb2a44bd580…
Author: Andreas Mueller <t3kcit(a)gmail.com>
Date: 2018-12-28 (Fri, 28 Dec 2018)
Changed paths:
M sklearn/ensemble/bagging.py
M sklearn/ensemble/forest.py
Log Message:
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DOC better explain bootstrap option in forests and bagging (#12875)
Commit: 77b9b1f1147ae39dbc2dc28fa3921f8c20ee5dee
https://github.com/scikit-learn/scikit-learn/commit/77b9b1f1147ae39dbc2dc28…
Author: Adrin Jalali <adrin.jalali(a)gmail.com>
Date: 2018-12-28 (Fri, 28 Dec 2018)
Changed paths:
M build_tools/circle/build_doc.sh
M examples/applications/svm_gui.py
Log Message:
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BLD circle-ci should only run/build plot_* files (#12797)
Commit: d6095eb0360e7193dff19822ad3be1be0ce7e0b0
https://github.com/scikit-learn/scikit-learn/commit/d6095eb0360e7193dff1982…
Author: Albert Thomas <albertthomas88(a)gmail.com>
Date: 2018-12-28 (Fri, 28 Dec 2018)
Changed paths:
M doc/developers/contributing.rst
Log Message:
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DOC add sentence about line length of rst files (#12883)
Commit: 3c6ab5fa8e05c20136b206d483c7d322be05e2c1
https://github.com/scikit-learn/scikit-learn/commit/3c6ab5fa8e05c20136b206d…
Author: Andreas Mueller <t3kcit(a)gmail.com>
Date: 2018-12-29 (Sat, 29 Dec 2018)
Changed paths:
M doc/developers/contributing.rst
M doc/themes/scikit-learn/layout.html
Log Message:
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DOC link to dev docs instead of contributing docs in the menu (#12885)
Commit: fda8f4786df97669025c9a664d7868105ef74799
https://github.com/scikit-learn/scikit-learn/commit/fda8f4786df97669025c9a6…
Author: Nicolas Hug <contact(a)nicolas-hug.com>
Date: 2018-12-31 (Mon, 31 Dec 2018)
Changed paths:
M CONTRIBUTING.md
M doc/developers/contributing.rst
Log Message:
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DOC Added tips for reading the code base (#12874)
* Added tips for reading the code base
* Put it in contributing.rst
* Added bullet point about inheritance
Commit: a1c199f2b024872174af174fb938e72738d0c768
https://github.com/scikit-learn/scikit-learn/commit/a1c199f2b024872174af174…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2019-01-02 (Wed, 02 Jan 2019)
Changed paths:
M sklearn/svm/tests/test_sparse.py
Log Message:
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TST Manually scramble the indices in svm tests (#12890)
* [scipy-dev] manually scramble the indices
* [scipy-dev] review comment
Commit: 6581b0d14238e6cd7588eb6ba3511cceb0343bc0
https://github.com/scikit-learn/scikit-learn/commit/6581b0d14238e6cd7588eb6…
Author: Elizabeth Sander <liz.sander91(a)gmail.com>
Date: 2019-01-03 (Thu, 03 Jan 2019)
Changed paths:
M doc/whats_new/v0.21.rst
M sklearn/ensemble/forest.py
M sklearn/ensemble/tests/test_forest.py
Log Message:
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FIX predict method for multiclass multioutput ensemble models (#12834)
Commit: 51eb2a71fc830363bd970372e638448411857da1
https://github.com/scikit-learn/scikit-learn/commit/51eb2a71fc830363bd97037…
Author: pavlos kallis <pakallis(a)gmail.com>
Date: 2019-01-03 (Thu, 03 Jan 2019)
Changed paths:
M doc/glossary.rst
Log Message:
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DOC Fix typo in glossary.rst (#12913)
Commit: 952ef6637a13ba01055bf0ed9d29d525f0fee5bc
https://github.com/scikit-learn/scikit-learn/commit/952ef6637a13ba01055bf0e…
Author: Andreas Mueller <t3kcit(a)gmail.com>
Date: 2019-01-03 (Thu, 03 Jan 2019)
Changed paths:
M benchmarks/bench_plot_fastkmeans.py
M benchmarks/bench_plot_omp_lars.py
M benchmarks/bench_plot_svd.py
M benchmarks/bench_random_projections.py
M benchmarks/bench_sample_without_replacement.py
M doc/conf.py
M doc/developers/contributing.rst
M doc/developers/performance.rst
M examples/applications/plot_out_of_core_classification.py
M examples/applications/svm_gui.py
M examples/applications/wikipedia_principal_eigenvector.py
M examples/bicluster/plot_bicluster_newsgroups.py
M examples/ensemble/plot_adaboost_multiclass.py
M sklearn/base.py
M sklearn/cluster/bicluster.py
M sklearn/cluster/birch.py
M sklearn/cluster/hierarchical.py
M sklearn/cluster/k_means_.py
M sklearn/cluster/mean_shift_.py
M sklearn/cluster/tests/test_k_means.py
M sklearn/cluster/tests/test_spectral.py
M sklearn/compose/_column_transformer.py
M sklearn/compose/tests/test_column_transformer.py
M sklearn/covariance/shrunk_covariance_.py
M sklearn/covariance/tests/test_graph_lasso.py
M sklearn/covariance/tests/test_graphical_lasso.py
M sklearn/cross_decomposition/pls_.py
M sklearn/datasets/_svmlight_format.pyx
M sklearn/datasets/base.py
M sklearn/datasets/kddcup99.py
M sklearn/datasets/lfw.py
M sklearn/datasets/openml.py
M sklearn/datasets/samples_generator.py
M sklearn/datasets/species_distributions.py
M sklearn/datasets/svmlight_format.py
M sklearn/datasets/tests/test_base.py
M sklearn/datasets/tests/test_lfw.py
M sklearn/datasets/tests/test_openml.py
M sklearn/datasets/tests/test_samples_generator.py
M sklearn/datasets/tests/test_svmlight_format.py
M sklearn/decomposition/base.py
M sklearn/decomposition/dict_learning.py
M sklearn/decomposition/factor_analysis.py
M sklearn/decomposition/fastica_.py
M sklearn/decomposition/online_lda.py
M sklearn/decomposition/pca.py
M sklearn/decomposition/tests/test_dict_learning.py
M sklearn/decomposition/tests/test_fastica.py
M sklearn/decomposition/tests/test_online_lda.py
M sklearn/discriminant_analysis.py
M sklearn/ensemble/bagging.py
M sklearn/ensemble/base.py
M sklearn/ensemble/forest.py
M sklearn/ensemble/gradient_boosting.py
M sklearn/ensemble/iforest.py
M sklearn/ensemble/partial_dependence.py
M sklearn/ensemble/tests/test_gradient_boosting.py
M sklearn/ensemble/weight_boosting.py
M sklearn/feature_extraction/_hashing.pyx
M sklearn/feature_extraction/dict_vectorizer.py
M sklearn/feature_extraction/tests/test_text.py
M sklearn/feature_extraction/text.py
M sklearn/feature_selection/base.py
M sklearn/feature_selection/from_model.py
M sklearn/feature_selection/mutual_info_.py
M sklearn/feature_selection/tests/test_rfe.py
M sklearn/gaussian_process/kernels.py
M sklearn/impute.py
M sklearn/linear_model/base.py
M sklearn/linear_model/coordinate_descent.py
M sklearn/linear_model/least_angle.py
M sklearn/linear_model/logistic.py
M sklearn/linear_model/ridge.py
M sklearn/linear_model/stochastic_gradient.py
M sklearn/linear_model/tests/test_least_angle.py
M sklearn/linear_model/theil_sen.py
M sklearn/manifold/spectral_embedding_.py
M sklearn/manifold/t_sne.py
M sklearn/manifold/tests/test_t_sne.py
M sklearn/metrics/cluster/tests/test_common.py
M sklearn/metrics/regression.py
M sklearn/metrics/scorer.py
M sklearn/metrics/tests/test_pairwise.py
M sklearn/mixture/base.py
M sklearn/mixture/gaussian_mixture.py
M sklearn/mixture/tests/test_gaussian_mixture.py
M sklearn/model_selection/_search.py
M sklearn/model_selection/_split.py
M sklearn/model_selection/_validation.py
M sklearn/model_selection/tests/test_search.py
M sklearn/model_selection/tests/test_split.py
M sklearn/model_selection/tests/test_validation.py
M sklearn/multiclass.py
M sklearn/multioutput.py
M sklearn/naive_bayes.py
M sklearn/neighbors/base.py
M sklearn/neural_network/multilayer_perceptron.py
M sklearn/neural_network/rbm.py
M sklearn/neural_network/tests/test_mlp.py
M sklearn/neural_network/tests/test_rbm.py
M sklearn/pipeline.py
M sklearn/preprocessing/_discretization.py
M sklearn/preprocessing/_encoders.py
M sklearn/preprocessing/base.py
M sklearn/preprocessing/data.py
M sklearn/preprocessing/imputation.py
M sklearn/preprocessing/label.py
M sklearn/preprocessing/tests/test_discretization.py
M sklearn/random_projection.py
M sklearn/semi_supervised/label_propagation.py
M sklearn/svm/base.py
M sklearn/svm/tests/test_svm.py
M sklearn/tests/test_discriminant_analysis.py
M sklearn/tests/test_metaestimators.py
M sklearn/tests/test_multiclass.py
M sklearn/tests/test_naive_bayes.py
M sklearn/tests/test_pipeline.py
M sklearn/tree/export.py
M sklearn/tree/tests/test_export.py
M sklearn/tree/tree.py
M sklearn/utils/_random.pyx
R sklearn/utils/bench.py
M sklearn/utils/class_weight.py
M sklearn/utils/estimator_checks.py
M sklearn/utils/extmath.py
M sklearn/utils/metaestimators.py
M sklearn/utils/multiclass.py
M sklearn/utils/sparsefuncs_fast.pyx
M sklearn/utils/testing.py
R sklearn/utils/tests/test_bench.py
M sklearn/utils/tests/test_deprecation.py
M sklearn/utils/tests/test_estimator_checks.py
M sklearn/utils/tests/test_extmath.py
M sklearn/utils/tests/test_fast_dict.py
M sklearn/utils/tests/test_fixes.py
M sklearn/utils/tests/test_multiclass.py
M sklearn/utils/tests/test_murmurhash.py
M sklearn/utils/tests/test_validation.py
M sklearn/utils/validation.py
Log Message:
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MRG Drop legacy python / remove six dependencies (#12639)
Commit: 836a8124a59aef4512bd1c043d8cb9864e991499
https://github.com/scikit-learn/scikit-learn/commit/836a8124a59aef4512bd1c0…
Author: Roman Yurchak <rth.yurchak(a)pm.me>
Date: 2019-01-03 (Thu, 03 Jan 2019)
Changed paths:
M sklearn/calibration.py
M sklearn/ensemble/weight_boosting.py
M sklearn/neural_network/_base.py
M sklearn/neural_network/tests/test_mlp.py
Log Message:
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MNT Use scipy.special.xlogy to avoid indefinite limit in 0 for x*log(y) (#12915)
Commit: 4223633b0d64c75fef1230f66cfb1d50fb5a8d04
https://github.com/scikit-learn/scikit-learn/commit/4223633b0d64c75fef1230f…
Author: Zayd Hammoudeh <ZaydH(a)users.noreply.github.com>
Date: 2019-01-03 (Thu, 03 Jan 2019)
Changed paths:
M sklearn/calibration.py
Log Message:
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FIX Use scipy.special.expit in calibration (#12909)
Commit: 02a0101c7c9e7c883fc1b916f0d2777e8581e1f8
https://github.com/scikit-learn/scikit-learn/commit/02a0101c7c9e7c883fc1b91…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2019-01-05 (Sat, 05 Jan 2019)
Changed paths:
M doc/whats_new/v0.21.rst
M sklearn/ensemble/gradient_boosting.py
Log Message:
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FIX learning_rate default value in update_terminal_regions (#12925)
Commit: 2df594564dbde085b51aca8775e60e137abaabc9
https://github.com/scikit-learn/scikit-learn/commit/2df594564dbde085b51aca8…
Author: Mickaël Schoentgen <contact(a)tiger-222.fr>
Date: 2019-01-05 (Sat, 05 Jan 2019)
Changed paths:
M examples/applications/svm_gui.py
M examples/decomposition/plot_kernel_pca.py
M examples/ensemble/plot_adaboost_multiclass.py
M examples/ensemble/plot_bias_variance.py
M examples/ensemble/plot_gradient_boosting_quantile.py
M examples/gaussian_process/plot_gpc_isoprobability.py
M examples/gaussian_process/plot_gpr_noisy_targets.py
M examples/model_selection/plot_learning_curve.py
M examples/model_selection/plot_validation_curve.py
M examples/preprocessing/plot_map_data_to_normal.py
M examples/svm/plot_svm_scale_c.py
Log Message:
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EXA Fix several DeprecationWarning: invalid escape sequence in examples (#12924)
Commit: 301c18e31038d83e531a33b83b885f01df6e5c63
https://github.com/scikit-learn/scikit-learn/commit/301c18e31038d83e531a33b…
Author: Gael Varoquaux <gael.varoquaux(a)normalesup.org>
Date: 2019-01-05 (Sat, 05 Jan 2019)
Changed paths:
M doc/developers/contributing.rst
Log Message:
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DOC How to deal with stalled PR (#12894)
Commit: 684d8a221d29ba1659e81961425a2380a9930044
https://github.com/scikit-learn/scikit-learn/commit/684d8a221d29ba1659e8196…
Author: Roman Yurchak <rth.yurchak(a)pm.me>
Date: 2019-01-06 (Sun, 06 Jan 2019)
Changed paths:
M sklearn/cluster/tests/test_mean_shift.py
M sklearn/feature_extraction/tests/test_text.py
M sklearn/manifold/spectral_embedding_.py
M sklearn/metrics/classification.py
M sklearn/model_selection/tests/test_validation.py
M sklearn/preprocessing/label.py
M sklearn/preprocessing/tests/test_label.py
M sklearn/tests/test_multiclass.py
M sklearn/utils/multiclass.py
M sklearn/utils/tests/test_multiclass.py
Log Message:
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MAINT Use set litterals when possible (#12667)
Commit: 6dd6af78ebaf672a030740859e2203318c6ef3bd
https://github.com/scikit-learn/scikit-learn/commit/6dd6af78ebaf672a0307408…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2019-01-07 (Mon, 07 Jan 2019)
Changed paths:
M sklearn/linear_model/tests/test_sgd.py
M sklearn/model_selection/tests/test_split.py
Log Message:
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TST Use match instead of message in pytest.raises (#12933)
Commit: 9acc606e6000b8ca8bf6644783fec2ef1efe2e4c
https://github.com/scikit-learn/scikit-learn/commit/9acc606e6000b8ca8bf6644…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2019-01-07 (Mon, 07 Jan 2019)
Changed paths:
M examples/model_selection/plot_validation_curve.py
Log Message:
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EXA Use cv=5 instead of cv=10 in plot_validation_curve.py (#12929)
Commit: cdfb5728fb789390a567ace6b734f426adb156be
https://github.com/scikit-learn/scikit-learn/commit/cdfb5728fb789390a567ace…
Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2019-01-08 (Tue, 08 Jan 2019)
Changed paths:
M doc/developers/contributing.rst
Log Message:
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DOC Update note on code contribution: use issue tracker not mailing list (#12917)
Commit: acb810647233e40839203ac553429e8663169702
https://github.com/scikit-learn/scikit-learn/commit/acb810647233e40839203ac…
Author: Roman Yurchak <rth.yurchak(a)pm.me>
Date: 2019-01-08 (Tue, 08 Jan 2019)
Changed paths:
M examples/applications/plot_out_of_core_classification.py
M examples/neural_networks/plot_mlp_alpha.py
M sklearn/cluster/_feature_agglomeration.py
M sklearn/datasets/samples_generator.py
M sklearn/decomposition/tests/test_pca.py
M sklearn/ensemble/forest.py
M sklearn/gaussian_process/kernels.py
M sklearn/linear_model/coordinate_descent.py
M sklearn/model_selection/_validation.py
M sklearn/model_selection/tests/test_split.py
M sklearn/multioutput.py
M sklearn/preprocessing/data.py
M sklearn/semi_supervised/label_propagation.py
M sklearn/tree/tests/test_reingold_tilford.py
M sklearn/utils/estimator_checks.py
Log Message:
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MNT Use list and dict comprehension (#12668)
Commit: 701144559f0448e7b140fead0384b9cba99af096
https://github.com/scikit-learn/scikit-learn/commit/701144559f0448e7b140fea…
Author: Roman Yurchak <rth.yurchak(a)pm.me>
Date: 2019-01-08 (Tue, 08 Jan 2019)
Changed paths:
M sklearn/covariance/graph_lasso_.py
M sklearn/datasets/samples_generator.py
M sklearn/feature_extraction/dict_vectorizer.py
M sklearn/feature_extraction/tests/test_text.py
M sklearn/feature_extraction/text.py
M sklearn/metrics/scorer.py
M sklearn/model_selection/_search.py
M sklearn/model_selection/_split.py
M sklearn/model_selection/tests/test_search.py
M sklearn/preprocessing/data.py
M sklearn/utils/__init__.py
M sklearn/utils/fixes.py
M sklearn/utils/multiclass.py
M sklearn/utils/tests/test_fixes.py
Log Message:
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MAINT Remove unused utils.fixes (#12928)
This continues the work done in https://github.com/scikit-learn/scikit-learn/pull/12639 on dropping the python 2 support by,
- ~~removing unnecessary `from __future__` imports~~
- removing unused `sklearn.utils.fixes` assuming we can agree in https://github.com/scikit-learn/scikit-learn/issues/12927 that `sklearn.utils.fixes` are private as was stated e.g. in https://github.com/scikit-learn/scikit-learn/issues/6616#issuecomment-24510…
Commit: 7c6d92bbd90ae40983f9bd14affe11fdb64eb046
https://github.com/scikit-learn/scikit-learn/commit/7c6d92bbd90ae40983f9bd1…
Author: Prabakaran Kumaresshan <k_prabakaran(a)hotmail.com>
Date: 2019-01-08 (Tue, 08 Jan 2019)
Changed paths:
A doc/images/grid_search_cross_validation.png
A doc/images/grid_search_workflow.png
M doc/modules/cross_validation.rst
Log Message:
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DOC Add schematics for cross-validation and grid search (#12281) (#12499)
Commit: e0697b01a78af2bae00dfb68e402b0ce6369e3ca
https://github.com/scikit-learn/scikit-learn/commit/e0697b01a78af2bae00dfb6…
Author: Rohan Lekhwani <rohanlekhwani(a)ymail.com>
Date: 2019-01-08 (Tue, 08 Jan 2019)
Changed paths:
M benchmarks/bench_isotonic.py
M examples/ensemble/plot_gradient_boosting_oob.py
M examples/linear_model/plot_logistic.py
M sklearn/discriminant_analysis.py
M sklearn/ensemble/tests/test_gradient_boosting.py
M sklearn/linear_model/base.py
M sklearn/tests/test_isotonic.py
M sklearn/utils/tests/test_extmath.py
Log Message:
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MNT Used scipy.special.expit for the inverse of the logit function (#12931)
Commit: 4c2eb3a0d67cbdacdb9314f585b2f73590ff0ac8
https://github.com/scikit-learn/scikit-learn/commit/4c2eb3a0d67cbdacdb9314f…
Author: Pawel Sendyk <pawelsendyk(a)berkeley.edu>
Date: 2019-01-08 (Tue, 08 Jan 2019)
Changed paths:
M doc/whats_new/v0.21.rst
M sklearn/metrics/regression.py
M sklearn/metrics/tests/test_regression.py
Log Message:
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FIX r2_score behavior with a single sample (#11435) (#12855)
Commit: c3f973b1de156509b7c59e2d5fafdef1c28f74dd
https://github.com/scikit-learn/scikit-learn/commit/c3f973b1de156509b7c59e2…
Author: Bryan Woods <bryanwoods(a)comcast.net>
Date: 2019-01-09 (Wed, 09 Jan 2019)
Changed paths:
M doc/whats_new/v0.21.rst
M sklearn/datasets/_svmlight_format.pyx
M sklearn/datasets/svmlight_format.py
M sklearn/datasets/tests/test_svmlight_format.py
Log Message:
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FIX supports 64 bit group ID and indexes (#12736)
Commit: 581752012c43e4838d920c33aad019e2cc24b40c
https://github.com/scikit-learn/scikit-learn/commit/581752012c43e4838d920c3…
Author: Wenhao Zhang <jiaowoshabi(a)users.noreply.github.com>
Date: 2019-01-09 (Wed, 09 Jan 2019)
Changed paths:
M doc/modules/grid_search.rst
M doc/whats_new/v0.21.rst
A examples/model_selection/plot_grid_search_refit_callable.py
M sklearn/model_selection/_search.py
M sklearn/model_selection/tests/test_search.py
Log Message:
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ENH refit=callable in *SearchCV adds flexibility in identifying the best estimator (#11354)
Commit: 41a2174fdee20fbadeee04ac4305000390cd9518
https://github.com/scikit-learn/scikit-learn/commit/41a2174fdee20fbadeee04a…
Author: Jérémie Méhault <jemeha(a)gmail.com>
Date: 2019-01-10 (Thu, 10 Jan 2019)
Changed paths:
M doc/developers/contributing.rst
Log Message:
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DOC: add install mode to contribute (#12850)
Commit: 0a07364abd2f16eff8b52ded40d3f67ef666d270
https://github.com/scikit-learn/scikit-learn/commit/0a07364abd2f16eff8b52de…
Author: Nicolas Hug <contact(a)nicolas-hug.com>
Date: 2019-01-10 (Thu, 10 Jan 2019)
Changed paths:
M doc/modules/linear_model.rst
M doc/whats_new/v0.21.rst
M sklearn/linear_model/logistic.py
M sklearn/linear_model/tests/test_logistic.py
Log Message:
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ENH Added penalty='none' to LogisticRegression (#12860)
Commit: 354c8c3bc3e36c69021713da66e7fa2f6cb07756
https://github.com/scikit-learn/scikit-learn/commit/354c8c3bc3e36c69021713d…
Author: mferrari3 <mlf419(a)nyu.edu>
Date: 2019-01-10 (Thu, 10 Jan 2019)
Changed paths:
M examples/svm/plot_svm_regression.py
Log Message:
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DOC update SVR plot point size and color (#12877)
With thanks to @rishikksh20 and @ml4713
Commit: 0eda10a598b3ae988f7d8c116089045474248d62
https://github.com/scikit-learn/scikit-learn/commit/0eda10a598b3ae988f7d8c1…
Author: Albert Thomas <albertthomas88(a)gmail.com>
Date: 2019-01-10 (Thu, 10 Jan 2019)
Changed paths:
M doc/modules/linear_model.rst
M doc/whats_new/v0.21.rst
M sklearn/linear_model/bayes.py
M sklearn/linear_model/tests/test_bayes.py
Log Message:
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FIX Bayesian ridge regression: returned values to match last update (#12174)
Commit: d300f406aeeac439b4212558f208ce5a9613a1d5
https://github.com/scikit-learn/scikit-learn/commit/d300f406aeeac439b421255…
Author: Rüdiger Busche <ruedigerbusche(a)web.de>
Date: 2019-01-10 (Thu, 10 Jan 2019)
Changed paths:
M doc/modules/feature_extraction.rst
M examples/bicluster/plot_bicluster_newsgroups.py
M sklearn/base.py
M sklearn/cluster/bicluster.py
M sklearn/cluster/hierarchical.py
M sklearn/cluster/k_means_.py
M sklearn/compose/tests/test_target.py
M sklearn/covariance/elliptic_envelope.py
M sklearn/covariance/graph_lasso_.py
M sklearn/covariance/shrunk_covariance_.py
M sklearn/cross_decomposition/cca_.py
M sklearn/cross_decomposition/pls_.py
M sklearn/decomposition/fastica_.py
M sklearn/decomposition/sparse_pca.py
M sklearn/dummy.py
M sklearn/ensemble/bagging.py
M sklearn/ensemble/forest.py
M sklearn/ensemble/gradient_boosting.py
M sklearn/ensemble/iforest.py
M sklearn/ensemble/tests/test_bagging.py
M sklearn/ensemble/tests/test_forest.py
M sklearn/ensemble/tests/test_weight_boosting.py
M sklearn/ensemble/voting_classifier.py
M sklearn/ensemble/weight_boosting.py
M sklearn/feature_extraction/text.py
M sklearn/feature_selection/univariate_selection.py
M sklearn/gaussian_process/kernels.py
M sklearn/isotonic.py
M sklearn/linear_model/coordinate_descent.py
M sklearn/linear_model/least_angle.py
M sklearn/linear_model/logistic.py
M sklearn/linear_model/passive_aggressive.py
M sklearn/linear_model/perceptron.py
M sklearn/linear_model/ridge.py
M sklearn/linear_model/stochastic_gradient.py
M sklearn/linear_model/tests/test_sgd.py
M sklearn/mixture/bayesian_mixture.py
M sklearn/mixture/gaussian_mixture.py
M sklearn/model_selection/_search.py
M sklearn/model_selection/_split.py
M sklearn/model_selection/tests/test_search.py
M sklearn/model_selection/tests/test_validation.py
M sklearn/multioutput.py
M sklearn/neighbors/classification.py
M sklearn/neighbors/lof.py
M sklearn/neighbors/regression.py
M sklearn/neighbors/unsupervised.py
M sklearn/neural_network/_stochastic_optimizers.py
M sklearn/neural_network/multilayer_perceptron.py
M sklearn/random_projection.py
M sklearn/semi_supervised/label_propagation.py
M sklearn/svm/base.py
M sklearn/svm/classes.py
M sklearn/tests/test_base.py
M sklearn/tree/export.py
M sklearn/tree/tree.py
M sklearn/utils/__init__.py
M sklearn/utils/metaestimators.py
M sklearn/utils/tests/test_estimator_checks.py
Log Message:
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MAINT Simplify super() calls (#12812)
Commit: 2955129128341ba3f2187c5a6619084f312bca88
https://github.com/scikit-learn/scikit-learn/commit/2955129128341ba3f2187c5…
Author: Prabakaran Kumaresshan <k_prabakaran+github(a)hotmail.com>
Date: 2019-01-12 (Sat, 12 Jan 2019)
Changed paths:
M COPYING
M doc/conf.py
Log Message:
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DOC Update copyright year for 2019 (#12964)
Commit: 0cf8a168dc07b8f4d985f17e71d178f378b88ae4
https://github.com/scikit-learn/scikit-learn/commit/0cf8a168dc07b8f4d985f17…
Author: Tashay Green <tashay.g(a)gmail.com>
Date: 2019-01-13 (Sun, 13 Jan 2019)
Changed paths:
M sklearn/svm/classes.py
Log Message:
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DOC references for probabilistic SVC (#12859)
Commit: f3b2579021e9048187a4fd7b88a80f579494f8dc
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Author: kms15 <kms15(a)case.edu>
Date: 2019-01-13 (Sun, 13 Jan 2019)
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DOC mention handlng of empty bins in calibration_curve docstring (#12926)
Commit: 39db9c4eca8d782932040e997d4e87ed9f450169
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Author: Finn O'Shea <finn.h.oshea(a)gmail.com>
Date: 2019-01-13 (Sun, 13 Jan 2019)
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DOC clarification to base.OutlierMixin.fit_predict method docstring (#12954)
Commit: 98baafb64a2503b3839671f9d497c2074c104c19
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Date: 2019-01-13 (Sun, 13 Jan 2019)
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MNT Inelegant failure of RandomTreesEmbedding.transform when not fitted (#12965)
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MAINT Removes total_seconds completely in benchmarks (#12969)
Commit: 47f66a3e69850fa60c5edf05f52b2b330cce285f
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MNT Ignore mypy cache folder (#12963)
Commit: 07b0a420a9dff7de9d97f93f1b6de6ef66d4edbf
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FIX builtin PrettyPrinter usage on estimators (#12938)
Commit: eab7e8b155ceed042ed6acf3d2d2a82f91fbd782
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Date: 2019-01-14 (Mon, 14 Jan 2019)
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DOC Mention StandardScaler ddof (#12950)
Commit: ba4720a01da0337ada688314ac207b7f69a2ea50
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Author: Zhuyi Xue <zhuyi.xue(a)alum.utoronto.ca>
Date: 2019-01-14 (Mon, 14 Jan 2019)
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DOC improved example plot in plot_lda_qda.py (#12942)
Commit: 7ee321fe448fd1a140496901a14bc2c9379ebea7
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Author: Thomas Fan <thomasjpfan(a)gmail.com>
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DOC Broken links to cluster.optics (#12981)
Commit: fce73db57a602eec89583dd1582e69781244fec5
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FIX deprecation handling in OneHotEncoder for categorical_features + handle_unknown='ignore' case (#12923)
Commit: 9928713ae57b4fb8e84ce18d36b3fdba8bd0b812
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DOC on parallelisation of custom scorer (#12813)
Commit: 41aa3edd7866942baad071331f0c1f083b6df3ca
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Author: Prabakaran Kumaresshan <k_prabakaran+github(a)hotmail.com>
Date: 2019-01-15 (Tue, 15 Jan 2019)
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MNT Remove build_tools/windows/windows_testing_downloader.ps1 (#12974)
Commit: 82e21609ff0c75b58ba13b024f090a7851b63fd8
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Author: Hanmin Qin <qinhanmin2005(a)sina.com>
Date: 2019-01-16 (Wed, 16 Jan 2019)
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DOC Move MultiTaskElasticNet what's new from 0.21 to 0.20.3 (#12984)
Commit: ff46f6e594efb2bd7adbeba0cf5f26d5cb3a6231
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Author: Reshama Shaikh <rs2715(a)stern.nyu.edu>
Date: 2019-01-16 (Wed, 16 Jan 2019)
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DOC improve tfidfvectorizer documentation (#12822)
Commit: 1550d65971804792062a7f34af74220ad8381000
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Author: Joel Nothman <joel.nothman(a)gmail.com>
Date: 2019-01-17 (Thu, 17 Jan 2019)
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M sklearn/preprocessing/tests/test_imputation.py
M sklearn/preprocessing/tests/test_label.py
M sklearn/random_projection.py
M sklearn/semi_supervised/label_propagation.py
M sklearn/semi_supervised/tests/test_label_propagation.py
M sklearn/svm/base.py
M sklearn/svm/classes.py
M sklearn/svm/tests/test_bounds.py
M sklearn/svm/tests/test_sparse.py
M sklearn/svm/tests/test_svm.py
M sklearn/tests/test_base.py
M sklearn/tests/test_calibration.py
M sklearn/tests/test_common.py
M sklearn/tests/test_config.py
M sklearn/tests/test_discriminant_analysis.py
M sklearn/tests/test_docstring_parameters.py
M sklearn/tests/test_dummy.py
M sklearn/tests/test_impute.py
M sklearn/tests/test_isotonic.py
M sklearn/tests/test_kernel_approximation.py
M sklearn/tests/test_metaestimators.py
M sklearn/tests/test_multiclass.py
M sklearn/tests/test_multioutput.py
M sklearn/tests/test_naive_bayes.py
M sklearn/tests/test_pipeline.py
M sklearn/tests/test_site_joblib.py
M sklearn/tree/__init__.py
A sklearn/tree/_reingold_tilford.py
M sklearn/tree/_tree.pyx
M sklearn/tree/export.py
M sklearn/tree/setup.py
M sklearn/tree/tests/test_export.py
A sklearn/tree/tests/test_reingold_tilford.py
M sklearn/tree/tests/test_tree.py
M sklearn/tree/tree.py
M sklearn/utils/__init__.py
M sklearn/utils/_joblib.py
A sklearn/utils/_pprint.py
M sklearn/utils/_random.pyx
R sklearn/utils/arpack.py
R sklearn/utils/bench.py
M sklearn/utils/class_weight.py
M sklearn/utils/estimator_checks.py
M sklearn/utils/extmath.py
M sklearn/utils/fixes.py
M sklearn/utils/graph.py
M sklearn/utils/metaestimators.py
M sklearn/utils/mocking.py
M sklearn/utils/multiclass.py
M sklearn/utils/random.py
M sklearn/utils/setup.py
M sklearn/utils/sparsefuncs.py
M sklearn/utils/sparsefuncs_fast.pyx
R sklearn/utils/sparsetools/__init__.py
R sklearn/utils/sparsetools/setup.py
R sklearn/utils/sparsetools/tests/__init__.py
M sklearn/utils/stats.py
M sklearn/utils/testing.py
R sklearn/utils/tests/test_bench.py
M sklearn/utils/tests/test_class_weight.py
M sklearn/utils/tests/test_deprecation.py
M sklearn/utils/tests/test_estimator_checks.py
M sklearn/utils/tests/test_extmath.py
M sklearn/utils/tests/test_fast_dict.py
M sklearn/utils/tests/test_fixes.py
R sklearn/utils/tests/test_graph.py
M sklearn/utils/tests/test_metaestimators.py
M sklearn/utils/tests/test_multiclass.py
M sklearn/utils/tests/test_murmurhash.py
A sklearn/utils/tests/test_pprint.py
M sklearn/utils/tests/test_random.py
M sklearn/utils/tests/test_sparsefuncs.py
R sklearn/utils/tests/test_stats.py
M sklearn/utils/tests/test_utils.py
M sklearn/utils/tests/test_validation.py
M sklearn/utils/validation.py
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