This is the Traceback I get:AssertionErrorTraceback (most recent call last)
<ipython-input-5-166b8f0141db> in <module>()
----> 1 check_estimator(OK.Sqizer)
/Users/Sam/anaconda/lib/python2.7/site-packages/sklearn/ utils/estimator_checks.pyc in check_estimator(Estimator)
253 check_parameters_default_constructible (name, Estimator)
254 for check in _yield_all_checks(name, Estimator):
--> 255 check(name, Estimator)
256
257
/Users/Sam/anaconda/lib/python2.7/site-packages/ sklearn/utils/testing.pyc in wrapper(*args, **kwargs)
353 with warnings.catch_warnings():
354 warnings.simplefilter("ignore", self.category )
--> 355 return fn(*args, **kwargs)
356
357 return wrapper
/Users/Sam/anaconda/lib/python2.7/site-packages/ sklearn/utils/estimator_ checks.pyc in check_transformer_general(name, Transformer )
578 X = StandardScaler().fit_transform(X)
579 X -= X.min()
--> 580 _check_transformer(name, Transformer, X, y)
581 _check_transformer(name, Transformer, X.tolist(), y.tolist())
582
/Users/Sam/anaconda/lib/python2.7/site-packages/sklearn/ utils/estimator_checks.pyc in _check_transformer(name, Transformer, X, y)
671 if hasattr(X, 'T'):
672 # If it's not an array, it does not have a 'T' property
--> 673 assert_raises(ValueError, transformer.transform, X.T)
674
675
/Users/Sam/anaconda/lib/python2.7/unittest/case.pyc in assertRaises(self, excClass, callableObj, *args, **kwargs)
471 return context
472 with context:
--> 473 callableObj(*args, **kwargs)
474
475 def _getAssertEqualityFunc(self, first, second):
/Users/Sam/anaconda/lib/python2.7/unittest/case.pyc in __exit__(self, exc_type, exc_value, tb)
114 exc_name = str(self.expected)
115 raise self.failureException(
--> 116 "{0} not raised".format(exc_name))
117 if not issubclass(exc_type, self.expected):
118 # let unexpected exceptions pass through
AssertionError: ValueError not raisedOn Tue, Jul 25, 2017 at 12:54 AM, Joel Nothman <joel.nothman@gmail.com> wrote:what is the failing test? please provide the full traceback....On 24 Jul 2017 10:58 pm, "Sam Barnett" <sambarnett95@gmail.com> wrote:Dear scikit-learn developers,I am developing a transformer, namedSqizer, that has the ultimate goal of modifying a kernel for use with thesklearn.svmpackage. When given an input data arrayX,Sqizer.transform(X)should have as its output the Gram matrix for Xusing the modified version of the kernel. Here is the code for the class so far:class Sqizer(BaseEstimator, TransformerMixin): def __init__(self, C=1.0, kernel='rbf', degree=3, gamma=1, coef0=0.0, cut_ord_pair=(2,1)): self.C = C self.kernel = kernel self.degree = degree self.gamma = gamma self.coef0 = coef0 self.cut_ord_pair = cut_ord_pair def fit(self, X, y=None): # Check that X and y have correct shape X, y = check_X_y(X, y) # Store the classes seen during fit self.classes_ = unique_labels(y) self.X_ = X self.y_ = y return self def transform(self, X): X = check_array(X, warn_on_dtype=True) """Returns Gram matrix corresponding to X, once sqized.""" def kPolynom(x,y): return (self.coef0+self.gamma*np.inner (x,y))**self.degree def kGauss(x,y): return np.exp(-self.gamma*np.sum(np.square (x-y))) def kLinear(x,y): return np.inner(x,y) def kSigmoid(x,y): return np.tanh(self.gamma*np.inner(x,y ) +self.coef0) def kernselect(kername): switcher = { 'linear': kPolynom, 'rbf': kGauss, 'sigmoid': kLinear, 'poly': kSigmoid, } return switcher.get(kername, "nothing") cut_off = self.cut_ord_pair[0] order = self.cut_ord_pair[1] from SeqKernel import hiSeqKernEval def getGram(Y): gram_matrix = np.zeros((Y.
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