On 5/17/19, Tyler Reddy <tyler.je.reddy@gmail.com> wrote:
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Hi all,
On behalf of the SciPy development team I'm pleased to announce the release of SciPy 1.3.0.
A big "thank you" to everyone who contributed to 1.3.0, and especially to Tyler for managing the release so well. Congatulations! Warren
Sources and binary wheels can be found at: https://pypi.org/project/scipy/ and at: https://github.com/scipy/scipy/releases/tag/v1.3.0
One of a few ways to install this release with pip:
pip install scipy==1.3.0
========================== SciPy 1.3.0 Release Notes ==========================
SciPy 1.3.0 is the culmination of 5 months of hard work. It contains many new features, numerous bug-fixes, improved test coverage and better documentation. There have been some API changes in this release, which are documented below. All users are encouraged to upgrade to this release, as there are a large number of bug-fixes and optimizations. Before upgrading, we recommend that users check that their own code does not use deprecated SciPy functionality (to do so, run your code with ``python -Wd`` and check for ``DeprecationWarning`` s). Our development attention will now shift to bug-fix releases on the 1.3.x branch, and on adding new features on the master branch.
This release requires Python 3.5+ and NumPy 1.13.3 or greater.
For running on PyPy, PyPy3 6.0+ and NumPy 1.15.0 are required.
Highlights of this release ---------------------------------
- - Three new ``stats`` functions, a rewrite of ``pearsonr``, and an exact computation of the Kolmogorov-Smirnov two-sample test - - A new Cython API for bounded scalar-function root-finders in `scipy.optimize` - - Substantial ``CSR`` and ``CSC`` sparse matrix indexing performance improvements - - Added support for interpolation of rotations with continuous angular rate and acceleration in ``RotationSpline``
New features ============
`scipy.interpolate` improvements -------------------------------------------
A new class ``CubicHermiteSpline`` is introduced. It is a piecewise-cubic interpolator which matches observed values and first derivatives. Existing cubic interpolators ``CubicSpline``, ``PchipInterpolator`` and ``Akima1DInterpolator`` were made subclasses of ``CubicHermiteSpline``.
`scipy.io` improvements --------------------------------
For the Attribute-Relation File Format (ARFF) `scipy.io.arff.loadarff` now supports relational attributes.
`scipy.io.mmread` can now parse Matrix Market format files with empty lines.
`scipy.linalg` improvements ------------------------------------
Added wrappers for ``?syconv`` routines, which convert a symmetric matrix given by a triangular matrix factorization into two matrices and vice versa.
`scipy.linalg.clarkson_woodruff_transform` now uses an algorithm that leverages sparsity. This may provide a 60-90 percent speedup for dense input matrices. Truly sparse input matrices should also benefit from the improved sketch algorithm, which now correctly runs in ``O(nnz(A))`` time.
Added new functions to calculate symmetric Fiedler matrices and Fiedler companion matrices, named `scipy.linalg.fiedler` and `scipy.linalg.fiedler_companion`, respectively. These may be used for root finding.
`scipy.ndimage` improvements ----------------------------------------
Gaussian filter performances may improve by an order of magnitude in some cases, thanks to removal of a dependence on ``np.polynomial``. This may impact `scipy.ndimage.gaussian_filter` for example.
`scipy.optimize` improvements ----------------------------------------
The `scipy.optimize.brute` minimizer obtained a new keyword ``workers``, which can be used to parallelize computation.
A Cython API for bounded scalar-function root-finders in `scipy.optimize` is available in a new module `scipy.optimize.cython_optimize` via ``cimport``. This API may be used with ``nogil`` and ``prange`` to loop over an array of function arguments to solve for an array of roots more quickly than with pure Python.
``'interior-point'`` is now the default method for ``linprog``, and ``'interior-point'`` now uses SuiteSparse for sparse problems when the required scikits (scikit-umfpack and scikit-sparse) are available. On benchmark problems (gh-10026), execution time reductions by factors of 2-3 were typical. Also, a new ``method='revised simplex'`` has been added. It is not as fast or robust as ``method='interior-point'``, but it is a faster, more robust, and equally accurate substitute for the legacy ``method='simplex'``.
``differential_evolution`` can now use a ``Bounds`` class to specify the bounds for the optimizing argument of a function.
`scipy.optimize.dual_annealing` performance improvements related to vectorisation of some internal code.
`scipy.signal` improvements -------------------------------------
Two additional methods of discretization are now supported by `scipy.signal.cont2discrete`: ``impulse`` and ``foh``.
`scipy.signal.firls` now uses faster solvers
`scipy.signal.detrend` now has a lower physical memory footprint in some cases, which may be leveraged using the new ``overwrite_data`` keyword argument
`scipy.signal.firwin` ``pass_zero`` argument now accepts new string arguments that allow specification of the desired filter type: ``'bandpass'``, ``'lowpass'``, ``'highpass'``, and ``'bandstop'``
`scipy.signal.sosfilt` may have improved performance due to lower retention of the global interpreter lock (GIL) in algorithm
`scipy.sparse` improvements --------------------------------------
A new keyword was added to ``csgraph.dijsktra`` that allows users to query the shortest path to ANY of the passed in indices, as opposed to the shortest path to EVERY passed index.
`scipy.sparse.linalg.lsmr` performance has been improved by roughly 10 percent on large problems
Improved performance and reduced physical memory footprint of the algorithm used by `scipy.sparse.linalg.lobpcg`
``CSR`` and ``CSC`` sparse matrix fancy indexing performance has been improved substantially
`scipy.spatial` improvements --------------------------------------
`scipy.spatial.ConvexHull` now has a ``good`` attribute that can be used alongsize the ``QGn`` Qhull options to determine which external facets of a convex hull are visible from an external query point.
`scipy.spatial.cKDTree.query_ball_point` has been modernized to use some newer Cython features, including GIL handling and exception translation. An issue with ``return_sorted=True`` and scalar queries was fixed, and a new mode named ``return_length`` was added. ``return_length`` only computes the length of the returned indices list instead of allocating the array every time.
`scipy.spatial.transform.RotationSpline` has been added to enable interpolation of rotations with continuous angular rates and acceleration
`scipy.stats` improvements ------------------------------------
Added a new function to compute the Epps-Singleton test statistic, `scipy.stats.epps_singleton_2samp`, which can be applied to continuous and discrete distributions.
New functions `scipy.stats.median_absolute_deviation` and `scipy.stats.gstd` (geometric standard deviation) were added. The `scipy.stats.combine_pvalues` method now supports ``pearson``, ``tippett`` and ``mudholkar_george`` pvalue combination methods.
The `scipy.stats.ortho_group` and `scipy.stats.special_ortho_group` ``rvs(dim)`` functions' algorithms were updated from a ``O(dim^4)`` implementation to a ``O(dim^3)`` which gives large speed improvements for ``dim>100``.
A rewrite of `scipy.stats.pearsonr` to use a more robust algorithm, provide meaningful exceptions and warnings on potentially pathological input, and fix at least five separate reported issues in the original implementation.
Improved the precision of ``hypergeom.logcdf`` and ``hypergeom.logsf``.
Added exact computation for Kolmogorov-Smirnov (KS) two-sample test, replacing the previously approximate computation for the two-sided test `stats.ks_2samp`. Also added a one-sided, two-sample KS test, and a keyword ``alternative`` to `stats.ks_2samp`.
Backwards incompatible changes ==========================
`scipy.interpolate` changes ------------------------------------
Functions from ``scipy.interpolate`` (``spleval``, ``spline``, ``splmake``, and ``spltopp``) and functions from ``scipy.misc`` (``bytescale``, ``fromimage``, ``imfilter``, ``imread``, ``imresize``, ``imrotate``, ``imsave``, ``imshow``, ``toimage``) have been removed. The former set has been deprecated since v0.19.0 and the latter has been deprecated since v1.0.0. Similarly, aliases from ``scipy.misc`` (``comb``, ``factorial``, ``factorial2``, ``factorialk``, ``logsumexp``, ``pade``, ``info``, ``source``, ``who``) which have been deprecated since v1.0.0 are removed. `SciPy documentation for v1.1.0 <https://docs.scipy.org/doc/scipy-1.1.0/reference/misc.html>`__ can be used to track the new import locations for the relocated functions.
`scipy.linalg` changes -----------------------------
For ``pinv``, ``pinv2``, and ``pinvh``, the default cutoff values are changed for consistency (see the docs for the actual values).
`scipy.optimize` changes ---------------------------------
The default method for ``linprog`` is now ``'interior-point'``. The method's robustness and speed come at a cost: solutions may not be accurate to machine precision or correspond with a vertex of the polytope defined by the constraints. To revert to the original simplex method, include the argument ``method='simplex'``.
`scipy.stats` changes ----------------------------
Previously, ``ks_2samp(data1, data2)`` would run a two-sided test and return the approximated p-value. The new signature, ``ks_2samp(data1, data2, alternative="two-sided", method="auto")``, still runs the two-sided test by default but returns the exact p-value for small samples and the approximated value for large samples. ``method="asymp"`` would be equivalent to the old version but ``auto`` is the better choice.
Other changes =============
Our tutorial has been expanded with a new section on global optimizers
There has been a rework of the ``stats.distributions`` tutorials.
`scipy.optimize` now correctly sets the convergence flag of the result to ``CONVERR``, a convergence error, for bounded scalar-function root-finders if the maximum iterations has been exceeded, ``disp`` is false, and ``full_output`` is true.
`scipy.optimize.curve_fit` no longer fails if ``xdata`` and ``ydata`` dtypes differ; they are both now automatically cast to ``float64``.
`scipy.ndimage` functions including ``binary_erosion``, ``binary_closing``, and ``binary_dilation`` now require an integer value for the number of iterations, which alleviates a number of reported issues.
Fixed normal approximation in case ``zero_method == "pratt"`` in `scipy.stats.wilcoxon`.
Fixes for incorrect probabilities, broadcasting issues and thread-safety related to stats distributions setting member variables inside ``_argcheck()``.
`scipy.optimize.newton` now correctly raises a ``RuntimeError``, when default arguments are used, in the case that a derivative of value zero is obtained, which is a special case of failing to converge.
A draft toolchain roadmap is now available, laying out a compatibility plan including Python versions, C standards, and NumPy versions.
Authors =======
* ananyashreyjain + * ApamNapat + * Scott Calabrese Barton + * Christoph Baumgarten * Peter Bell + * Jacob Blomgren + * Doctor Bob + * Mana Borwornpadungkitti + * Matthew Brett * Evgeni Burovski * CJ Carey * Vega Theil Carstensen + * Robert Cimrman * Forrest Collman + * Pietro Cottone + * David + * Idan David + * Christoph Deil * Dieter Werthmüller * Conner DiPaolo + * Dowon * Michael Dunphy + * Peter Andreas Entschev + * Gökçen Eraslan + * Johann Faouzi + * Yu Feng * Piotr Figiel + * Matthew H Flamm * Franz Forstmayr + * Christoph Gohlke * Richard Janis Goldschmidt + * Ralf Gommers * Lars Grueter * Sylvain Gubian * Matt Haberland * Yaroslav Halchenko * Charles Harris * Lindsey Hiltner * JakobStruye + * He Jia + * Jwink3101 + * Greg Kiar + * Julius Bier Kirkegaard * John Kirkham + * Thomas Kluyver * Vladimir Korolev + * Joseph Kuo + * Michael Lamparski + * Eric Larson * Denis Laxalde * Katrin Leinweber * Jesse Livezey * ludcila + * Dhruv Madeka + * Magnus + * Nikolay Mayorov * Mark Mikofski * Jarrod Millman * Markus Mohrhard + * Eric Moore * Andrew Nelson * Aki Nishimura + * OGordon100 + * Petar Mlinarić + * Stefan Peterson * Matti Picus + * Ilhan Polat * Aaron Pries + * Matteo Ravasi + * Tyler Reddy * Ashton Reimer + * Joscha Reimer * rfezzani + * Riadh + * Lucas Roberts * Heshy Roskes + * Mirko Scholz + * Taylor D. Scott + * Srikrishna Sekhar + * Kevin Sheppard + * Sourav Singh * skjerns + * Kai Striega * SyedSaifAliAlvi + * Gopi Manohar T + * Albert Thomas + * Timon + * Paul van Mulbregt * Jacob Vanderplas * Daniel Vargas + * Pauli Virtanen * VNMabus + * Stefan van der Walt * Warren Weckesser * Josh Wilson * Nate Yoder + * Roman Yurchak
A total of 97 people contributed to this release. People with a "+" by their names contributed a patch for the first time. This list of names is automatically generated, and may not be fully complete.
Issues closed for 1.3.0 -------------------------------
* `#1320 <https://github.com/scipy/scipy/issues/1320>`__: scipy.stats.distribution: problem with self.a, self.b if they... * `#2002 <https://github.com/scipy/scipy/issues/2002>`__: members set in scipy.stats.distributions.##._argcheck (Trac #1477) * `#2823 <https://github.com/scipy/scipy/issues/2823>`__: distribution methods add tmp * `#3220 <https://github.com/scipy/scipy/issues/3220>`__: Scipy.opimize.fmin_powell direc argument syntax unclear * `#3728 <https://github.com/scipy/scipy/issues/3728>`__: scipy.stats.pearsonr: possible bug with zero variance input * `#6805 <https://github.com/scipy/scipy/issues/6805>`__: error-in-scipy-wilcoxon-signed-rank-test-for-equal-series * `#6873 <https://github.com/scipy/scipy/issues/6873>`__: 'stats.boxcox' return all same values * `#7117 <https://github.com/scipy/scipy/issues/7117>`__: Warn users when using float32 input data to curve_fit and friends * `#7632 <https://github.com/scipy/scipy/issues/7632>`__: it's not possible to tell the \`optimize.least_squares\` solver... * `#7730 <https://github.com/scipy/scipy/issues/7730>`__: stats.pearsonr: Potential division by zero for dataset of length... * `#7933 <https://github.com/scipy/scipy/issues/7933>`__: stats.truncnorm fails when providing values outside truncation... * `#8033 <https://github.com/scipy/scipy/issues/8033>`__: Add standard filter types to firwin to set pass_zero intuitively... * `#8600 <https://github.com/scipy/scipy/issues/8600>`__: lfilter.c.src zfill has erroneous header * `#8692 <https://github.com/scipy/scipy/issues/8692>`__: Non-negative values of \`stats.hypergeom.logcdf\` * `#8734 <https://github.com/scipy/scipy/issues/8734>`__: Enable pip build isolation * `#8861 <https://github.com/scipy/scipy/issues/8861>`__: scipy.linalg.pinv gives wrong result while scipy.linalg.pinv2... * `#8915 <https://github.com/scipy/scipy/issues/8915>`__: need to fix macOS build against older numpy versions * `#8980 <https://github.com/scipy/scipy/issues/8980>`__: scipy.stats.pearsonr overflows with high values of x and y * `#9226 <https://github.com/scipy/scipy/issues/9226>`__: BUG: signal: SystemError: <built-in function _linear_filter>... * `#9254 <https://github.com/scipy/scipy/issues/9254>`__: BUG: root finders brentq, etc, flag says "converged" even if... * `#9308 <https://github.com/scipy/scipy/issues/9308>`__: Test failure - test_initial_constraints_as_canonical * `#9353 <https://github.com/scipy/scipy/issues/9353>`__: scipy.stats.pearsonr returns r=1 if r_num/r_den = inf * `#9359 <https://github.com/scipy/scipy/issues/9359>`__: Planck distribution is a geometric distribution * `#9381 <https://github.com/scipy/scipy/issues/9381>`__: linregress should warn user in 2x2 array case * `#9406 <https://github.com/scipy/scipy/issues/9406>`__: BUG: stats: In pearsonr, when r is nan, the p-value must also... * `#9437 <https://github.com/scipy/scipy/issues/9437>`__: Cannot create sparse matrix from size_t indexes * `#9518 <https://github.com/scipy/scipy/issues/9518>`__: Relational attributes in loadarff * `#9551 <https://github.com/scipy/scipy/issues/9551>`__: BUG: scipy.optimize.newton says the root of x^2+1 is zero. * `#9564 <https://github.com/scipy/scipy/issues/9564>`__: rv_sample accepts invalid input in scipy.stats * `#9565 <https://github.com/scipy/scipy/issues/9565>`__: improper handling of multidimensional input in stats.rv_sample * `#9581 <https://github.com/scipy/scipy/issues/9581>`__: Least-squares minimization fails silently when x and y data are... * `#9587 <https://github.com/scipy/scipy/issues/9587>`__: Outdated value for scipy.constants.au * `#9611 <https://github.com/scipy/scipy/issues/9611>`__: Overflow error with new way of p-value calculation in kendall... * `#9645 <https://github.com/scipy/scipy/issues/9645>`__: \`scipy.stats.mode\` crashes with variable length arrays (\`dtype=object\`) * `#9734 <https://github.com/scipy/scipy/issues/9734>`__: PendingDeprecationWarning for np.matrix with pytest * `#9786 <https://github.com/scipy/scipy/issues/9786>`__: stats.ks_2samp() misleading for small data sets. * `#9790 <https://github.com/scipy/scipy/issues/9790>`__: Excessive memory usage on detrend * `#9801 <https://github.com/scipy/scipy/issues/9801>`__: dual_annealing does not set the success attribute in OptimizeResult * `#9833 <https://github.com/scipy/scipy/issues/9833>`__: IntegrationWarning from mielke.stats() during build of html doc. * `#9835 <https://github.com/scipy/scipy/issues/9835>`__: scipy.signal.firls seems to be inefficient versus MATLAB firls * `#9864 <https://github.com/scipy/scipy/issues/9864>`__: Curve_fit does not check for empty input data if called with... * `#9869 <https://github.com/scipy/scipy/issues/9869>`__: scipy.ndimage.label: Minor documentation issue * `#9882 <https://github.com/scipy/scipy/issues/9882>`__: format at the wrong paranthesis in scipy.spatial.transform * `#9889 <https://github.com/scipy/scipy/issues/9889>`__: scipy.signal.find_peaks minor documentation issue * `#9890 <https://github.com/scipy/scipy/issues/9890>`__: Minkowski p-norm Issues in cKDTree For Values Other Than 2 Or... * `#9896 <https://github.com/scipy/scipy/issues/9896>`__: scipy.stats._argcheck sets (not just checks) values * `#9905 <https://github.com/scipy/scipy/issues/9905>`__: Memory error in ndimage.binary_erosion * `#9909 <https://github.com/scipy/scipy/issues/9909>`__: binary_dilation/erosion/closing crashes when iterations is float * `#9919 <https://github.com/scipy/scipy/issues/9919>`__: BUG: \`coo_matrix\` does not validate the \`shape\` argument. * `#9982 <https://github.com/scipy/scipy/issues/9982>`__: lsq_linear hangs/infinite loop with 'trf' method * `#10003 <https://github.com/scipy/scipy/issues/10003>`__: exponnorm.pdf returns NAN for small K * `#10011 <https://github.com/scipy/scipy/issues/10011>`__: Incorrect check for invalid rotation plane in scipy.ndimage.rotate * `#10024 <https://github.com/scipy/scipy/issues/10024>`__: Fails to build from git * `#10048 <https://github.com/scipy/scipy/issues/10048>`__: DOC: scipy.optimize.root_scalar * `#10068 <https://github.com/scipy/scipy/issues/10068>`__: DOC: scipy.interpolate.splev * `#10074 <https://github.com/scipy/scipy/issues/10074>`__: BUG: \`expm\` calculates the wrong coefficients in the backward...
Pull requests for 1.3.0 ------------------------------
* `#7827 <https://github.com/scipy/scipy/pull/7827>`__: ENH: sparse: overhaul of sparse matrix indexing * `#8431 <https://github.com/scipy/scipy/pull/8431>`__: ENH: Cython optimize zeros api * `#8743 <https://github.com/scipy/scipy/pull/8743>`__: DOC: Updated linalg.pinv, .pinv2, .pinvh docstrings * `#8744 <https://github.com/scipy/scipy/pull/8744>`__: DOC: added examples to remez docstring * `#9227 <https://github.com/scipy/scipy/pull/9227>`__: DOC: update description of "direc" parameter of "fmin_powell" * `#9263 <https://github.com/scipy/scipy/pull/9263>`__: ENH: optimize: added "revised simplex" for scipy.optimize.linprog * `#9325 <https://github.com/scipy/scipy/pull/9325>`__: DEP: Remove deprecated functions for 1.3.0 * `#9330 <https://github.com/scipy/scipy/pull/9330>`__: Add note on push and pull affine transformations * `#9423 <https://github.com/scipy/scipy/pull/9423>`__: DOC: Clearly state how 2x2 input arrays are handled in stats.linregress * `#9428 <https://github.com/scipy/scipy/pull/9428>`__: ENH: parallelised brute * `#9438 <https://github.com/scipy/scipy/pull/9438>`__: BUG: Initialize coo matrix with size_t indexes * `#9455 <https://github.com/scipy/scipy/pull/9455>`__: MAINT: Speed up get_(lapack,blas)_func * `#9465 <https://github.com/scipy/scipy/pull/9465>`__: MAINT: Clean up optimize.zeros C solvers interfaces/code. * `#9477 <https://github.com/scipy/scipy/pull/9477>`__: DOC: linalg: fix lstsq docstring on residues shape * `#9478 <https://github.com/scipy/scipy/pull/9478>`__: DOC: Add docstring examples for rosen functions * `#9479 <https://github.com/scipy/scipy/pull/9479>`__: DOC: Add docstring example for ai_zeros and bi_zeros * `#9480 <https://github.com/scipy/scipy/pull/9480>`__: MAINT: linalg: lstsq clean up * `#9489 <https://github.com/scipy/scipy/pull/9489>`__: DOC: roadmap update for changes over the last year. * `#9492 <https://github.com/scipy/scipy/pull/9492>`__: MAINT: stats: Improve implementation of chi2 ppf method. * `#9497 <https://github.com/scipy/scipy/pull/9497>`__: DOC: Improve docstrings sparse.linalg.isolve * `#9499 <https://github.com/scipy/scipy/pull/9499>`__: DOC: Replace "Scipy" with "SciPy" in the .rst doc files for consistency. * `#9500 <https://github.com/scipy/scipy/pull/9500>`__: DOC: Document the toolchain and its roadmap. * `#9505 <https://github.com/scipy/scipy/pull/9505>`__: DOC: specify which definition of skewness is used * `#9511 <https://github.com/scipy/scipy/pull/9511>`__: DEP: interpolate: remove deprecated interpolate_wrapper * `#9517 <https://github.com/scipy/scipy/pull/9517>`__: BUG: improve error handling in stats.iqr * `#9522 <https://github.com/scipy/scipy/pull/9522>`__: ENH: Add Fiedler and fiedler companion to special matrices * `#9526 <https://github.com/scipy/scipy/pull/9526>`__: TST: relax precision requirements in signal.correlate tests * `#9529 <https://github.com/scipy/scipy/pull/9529>`__: DOC: fix missing random seed in optimize.newton example * `#9533 <https://github.com/scipy/scipy/pull/9533>`__: MAINT: Use list comprehension when possible * `#9537 <https://github.com/scipy/scipy/pull/9537>`__: DOC: add a "big picture" roadmap * `#9538 <https://github.com/scipy/scipy/pull/9538>`__: DOC: Replace "Numpy" with "NumPy" in .py, .rst and .txt doc files... * `#9539 <https://github.com/scipy/scipy/pull/9539>`__: ENH: add two-sample test (Epps-Singleton) to scipy.stats * `#9559 <https://github.com/scipy/scipy/pull/9559>`__: DOC: add section on global optimizers to tutorial * `#9561 <https://github.com/scipy/scipy/pull/9561>`__: ENH: remove noprefix.h, change code appropriately * `#9562 <https://github.com/scipy/scipy/pull/9562>`__: MAINT: stats: Rewrite pearsonr. * `#9563 <https://github.com/scipy/scipy/pull/9563>`__: BUG: Minor bug fix Callback in linprog(method='simplex') * `#9568 <https://github.com/scipy/scipy/pull/9568>`__: MAINT: raise runtime error for newton with zeroder if disp true,... * `#9570 <https://github.com/scipy/scipy/pull/9570>`__: Correct docstring in show_options in optimize. Fixes #9407 * `#9573 <https://github.com/scipy/scipy/pull/9573>`__: BUG fixes range of pk variable pre-check * `#9577 <https://github.com/scipy/scipy/pull/9577>`__: TST: fix minor issue in a signal.stft test. * `#9580 <https://github.com/scipy/scipy/pull/9580>`__: Included blank line before list - Fixes #8658 * `#9582 <https://github.com/scipy/scipy/pull/9582>`__: MAINT: drop Python 2.7 and 3.4 * `#9588 <https://github.com/scipy/scipy/pull/9588>`__: MAINT: update \`constants.astronomical_unit\` to new 2012 value. * `#9592 <https://github.com/scipy/scipy/pull/9592>`__: TST: Add 32-bit testing to CI * `#9593 <https://github.com/scipy/scipy/pull/9593>`__: DOC: Replace cumulative density with cumulative distribution * `#9596 <https://github.com/scipy/scipy/pull/9596>`__: TST: remove VC 9.0 from Azure CI * `#9599 <https://github.com/scipy/scipy/pull/9599>`__: Hyperlink DOI to preferred resolver * `#9601 <https://github.com/scipy/scipy/pull/9601>`__: DEV: try to limit GC memory use on PyPy * `#9603 <https://github.com/scipy/scipy/pull/9603>`__: MAINT: improve logcdf and logsf of hypergeometric distribution * `#9605 <https://github.com/scipy/scipy/pull/9605>`__: Reference to pylops in LinearOperator notes and ARPACK example * `#9617 <https://github.com/scipy/scipy/pull/9617>`__: TST: reduce max memory usage for sparse.linalg.lgmres test * `#9619 <https://github.com/scipy/scipy/pull/9619>`__: FIX: Sparse matrix addition/subtraction eliminates explicit zeros * `#9621 <https://github.com/scipy/scipy/pull/9621>`__: bugfix in rv_sample in scipy.stats * `#9622 <https://github.com/scipy/scipy/pull/9622>`__: MAINT: Raise error in directed_hausdorff distance * `#9623 <https://github.com/scipy/scipy/pull/9623>`__: DOC: Build docs with warnings as errors * `#9625 <https://github.com/scipy/scipy/pull/9625>`__: Return the number of calls to 'hessp' (not just 'hess') in trust... * `#9627 <https://github.com/scipy/scipy/pull/9627>`__: BUG: ignore empty lines in mmio * `#9637 <https://github.com/scipy/scipy/pull/9637>`__: Function to calculate the MAD of an array * `#9646 <https://github.com/scipy/scipy/pull/9646>`__: BUG: stats: mode for objects w/ndim > 1 * `#9648 <https://github.com/scipy/scipy/pull/9648>`__: Add \`stats.contingency\` to refguide-check * `#9650 <https://github.com/scipy/scipy/pull/9650>`__: ENH: many lobpcg() algorithm improvements * `#9652 <https://github.com/scipy/scipy/pull/9652>`__: Move misc.doccer to _lib.doccer * `#9660 <https://github.com/scipy/scipy/pull/9660>`__: ENH: add pearson, tippett, and mudholkar-george to combine_pvalues * `#9661 <https://github.com/scipy/scipy/pull/9661>`__: BUG: Fix ksone right-hand endpoint, documentation and tests. * `#9664 <https://github.com/scipy/scipy/pull/9664>`__: ENH: adding multi-target dijsktra performance enhancement * `#9670 <https://github.com/scipy/scipy/pull/9670>`__: MAINT: link planck and geometric distribution in scipy.stats * `#9676 <https://github.com/scipy/scipy/pull/9676>`__: ENH: optimize: change default linprog method to interior-point * `#9685 <https://github.com/scipy/scipy/pull/9685>`__: Added reference to ndimage.filters.median_filter * `#9705 <https://github.com/scipy/scipy/pull/9705>`__: Fix coefficients in expm helper function * `#9711 <https://github.com/scipy/scipy/pull/9711>`__: Release the GIL during sosfilt processing for simple types * `#9721 <https://github.com/scipy/scipy/pull/9721>`__: ENH: Convexhull visiblefacets * `#9723 <https://github.com/scipy/scipy/pull/9723>`__: BLD: Modify rv_generic._construct_doc to print out failing distribution... * `#9726 <https://github.com/scipy/scipy/pull/9726>`__: BUG: Fix small issues with \`signal.lfilter' * `#9729 <https://github.com/scipy/scipy/pull/9729>`__: BUG: Typecheck iterations for binary image operations * `#9730 <https://github.com/scipy/scipy/pull/9730>`__: ENH: reduce sizeof(NI_WatershedElement) by 20% * `#9731 <https://github.com/scipy/scipy/pull/9731>`__: ENH: remove suspicious sequence of type castings * `#9739 <https://github.com/scipy/scipy/pull/9739>`__: BUG: qr_updates fails if u is exactly in span Q * `#9749 <https://github.com/scipy/scipy/pull/9749>`__: BUG: MapWrapper.__exit__ should terminate * `#9753 <https://github.com/scipy/scipy/pull/9753>`__: ENH: Added exact computation for Kolmogorov-Smirnov two-sample... * `#9755 <https://github.com/scipy/scipy/pull/9755>`__: DOC: Added example for signal.impulse, copied from impulse2 * `#9756 <https://github.com/scipy/scipy/pull/9756>`__: DOC: Added docstring example for iirdesign * `#9757 <https://github.com/scipy/scipy/pull/9757>`__: DOC: Added examples for step functions * `#9759 <https://github.com/scipy/scipy/pull/9759>`__: ENH: Allow pass_zero to act like btype * `#9760 <https://github.com/scipy/scipy/pull/9760>`__: DOC: Added docstring for lp2bs * `#9761 <https://github.com/scipy/scipy/pull/9761>`__: DOC: Added docstring and example for lp2bp * `#9764 <https://github.com/scipy/scipy/pull/9764>`__: BUG: Catch internal warnings for matrix * `#9766 <https://github.com/scipy/scipy/pull/9766>`__: ENH: Speed up _gaussian_kernel1d by removing dependence on np.polynomial * `#9769 <https://github.com/scipy/scipy/pull/9769>`__: BUG: Fix Cubic Spline Read Only issues * `#9773 <https://github.com/scipy/scipy/pull/9773>`__: DOC: Several docstrings * `#9774 <https://github.com/scipy/scipy/pull/9774>`__: TST: bump Azure CI OpenBLAS version to match wheels * `#9775 <https://github.com/scipy/scipy/pull/9775>`__: DOC: Improve clarity of cov_x documentation for scipy.optimize.leastsq * `#9779 <https://github.com/scipy/scipy/pull/9779>`__: ENH: dual_annealing vectorise visit_fn * `#9788 <https://github.com/scipy/scipy/pull/9788>`__: TST, BUG: f2py-related issues with NumPy < 1.14.0 * `#9791 <https://github.com/scipy/scipy/pull/9791>`__: BUG: fix amax constraint not enforced in scalar_search_wolfe2 * `#9792 <https://github.com/scipy/scipy/pull/9792>`__: ENH: Allow inplace copying in place in "detrend" function * `#9795 <https://github.com/scipy/scipy/pull/9795>`__: DOC: Fix/update docstring for dstn and dst * `#9796 <https://github.com/scipy/scipy/pull/9796>`__: MAINT: Allow None tolerances in least_squares * `#9798 <https://github.com/scipy/scipy/pull/9798>`__: BUG: fixes abort trap 6 error in scipy issue 9785 in unit tests * `#9807 <https://github.com/scipy/scipy/pull/9807>`__: MAINT: improve doc and add alternative keyword to wilcoxon in... * `#9808 <https://github.com/scipy/scipy/pull/9808>`__: Fix PPoly integrate and test for CubicSpline * `#9810 <https://github.com/scipy/scipy/pull/9810>`__: ENH: Add the geometric standard deviation function * `#9811 <https://github.com/scipy/scipy/pull/9811>`__: MAINT: remove invalid derphi default None value in scalar_search_wolfe2 * `#9813 <https://github.com/scipy/scipy/pull/9813>`__: Adapt hamming distance in C to support weights * `#9817 <https://github.com/scipy/scipy/pull/9817>`__: DOC: Copy solver description to solver modules * `#9829 <https://github.com/scipy/scipy/pull/9829>`__: ENH: Add FOH and equivalent impulse response discretizations... * `#9831 <https://github.com/scipy/scipy/pull/9831>`__: ENH: Implement RotationSpline * `#9834 <https://github.com/scipy/scipy/pull/9834>`__: DOC: Change mielke distribution default parameters to ensure... * `#9838 <https://github.com/scipy/scipy/pull/9838>`__: ENH: Use faster solvers for firls * `#9854 <https://github.com/scipy/scipy/pull/9854>`__: ENH: loadarff now supports relational attributes. * `#9856 <https://github.com/scipy/scipy/pull/9856>`__: integrate.bvp - improve handling of nonlinear boundary conditions * `#9862 <https://github.com/scipy/scipy/pull/9862>`__: TST: reduce Appveyor CI load * `#9874 <https://github.com/scipy/scipy/pull/9874>`__: DOC: Update requirements in release notes * `#9883 <https://github.com/scipy/scipy/pull/9883>`__: BUG: fixed parenthesis in spatial.rotation * `#9884 <https://github.com/scipy/scipy/pull/9884>`__: ENH: Use Sparsity in Clarkson-Woodruff Sketch * `#9888 <https://github.com/scipy/scipy/pull/9888>`__: MAINT: Replace NumPy aliased functions * `#9892 <https://github.com/scipy/scipy/pull/9892>`__: BUG: Fix 9890 query_ball_point returns wrong result when p is... * `#9893 <https://github.com/scipy/scipy/pull/9893>`__: BUG: curve_fit doesn't check for empty input if called with bounds * `#9894 <https://github.com/scipy/scipy/pull/9894>`__: scipy.signal.find_peaks documentation error * `#9898 <https://github.com/scipy/scipy/pull/9898>`__: BUG: Set success attribute in OptimizeResult. See #9801 * `#9900 <https://github.com/scipy/scipy/pull/9900>`__: BUG: Restrict rv_generic._argcheck() and its overrides from setting... * `#9906 <https://github.com/scipy/scipy/pull/9906>`__: fixed a bug in kde logpdf * `#9911 <https://github.com/scipy/scipy/pull/9911>`__: DOC: replace example for "np.select" with the one from numpy... * `#9912 <https://github.com/scipy/scipy/pull/9912>`__: BF(DOC): point to numpy.select instead of plain (python) .select * `#9914 <https://github.com/scipy/scipy/pull/9914>`__: DOC: change ValueError message in _validate_pad of signaltools. * `#9915 <https://github.com/scipy/scipy/pull/9915>`__: cKDTree query_ball_point improvements * `#9918 <https://github.com/scipy/scipy/pull/9918>`__: Update ckdtree.pyx with boxsize argument in docstring * `#9920 <https://github.com/scipy/scipy/pull/9920>`__: BUG: sparse: Validate explicit shape if given with dense argument... * `#9924 <https://github.com/scipy/scipy/pull/9924>`__: BLD: add back pyproject.toml * `#9931 <https://github.com/scipy/scipy/pull/9931>`__: Fix empty constraint * `#9935 <https://github.com/scipy/scipy/pull/9935>`__: DOC: fix references for stats.f_oneway * `#9936 <https://github.com/scipy/scipy/pull/9936>`__: Revert gh-9619: "FIX: Sparse matrix addition/subtraction eliminates... * `#9937 <https://github.com/scipy/scipy/pull/9937>`__: MAINT: fix PEP8 issues and update to pycodestyle 2.5.0 * `#9939 <https://github.com/scipy/scipy/pull/9939>`__: DOC: correct \`structure\` description in \`ndimage.label\` docstring * `#9940 <https://github.com/scipy/scipy/pull/9940>`__: MAINT: remove extraneous distutils copies * `#9945 <https://github.com/scipy/scipy/pull/9945>`__: ENH: differential_evolution can use Bounds object * `#9949 <https://github.com/scipy/scipy/pull/9949>`__: Added 'std' to add doctstrings since it is a \`known_stats\`... * `#9953 <https://github.com/scipy/scipy/pull/9953>`__: DOC: Documentation cleanup for stats tutorials. * `#9962 <https://github.com/scipy/scipy/pull/9962>`__: __repr__ for Bounds * `#9971 <https://github.com/scipy/scipy/pull/9971>`__: ENH: Improve performance of lsmr * `#9987 <https://github.com/scipy/scipy/pull/9987>`__: CI: pin Sphinx version to 1.8.5 * `#9990 <https://github.com/scipy/scipy/pull/9990>`__: ENH: constraint violation * `#9991 <https://github.com/scipy/scipy/pull/9991>`__: BUG: Avoid inplace modification of input array in newton * `#9995 <https://github.com/scipy/scipy/pull/9995>`__: MAINT: sparse.csgraph: Add cdef to stop build warning. * `#9996 <https://github.com/scipy/scipy/pull/9996>`__: BUG: Make minimize_quadratic_1d work with infinite bounds correctly * `#10004 <https://github.com/scipy/scipy/pull/10004>`__: BUG: Fix unbound local error in linprog - simplex. * `#10007 <https://github.com/scipy/scipy/pull/10007>`__: BLD: fix Python 3.7 build with build isolation * `#10009 <https://github.com/scipy/scipy/pull/10009>`__: BUG: Make sure that _binary_erosion only accepts an integer number... * `#10016 <https://github.com/scipy/scipy/pull/10016>`__: Update link to airspeed-velocity * `#10017 <https://github.com/scipy/scipy/pull/10017>`__: DOC: Update \`interpolate.LSQSphereBivariateSpline\` to include... * `#10018 <https://github.com/scipy/scipy/pull/10018>`__: MAINT: special: Fix a few warnings that occur when compiling... * `#10019 <https://github.com/scipy/scipy/pull/10019>`__: TST: Azure summarizes test failures * `#10021 <https://github.com/scipy/scipy/pull/10021>`__: ENH: Introduce CubicHermiteSpline * `#10022 <https://github.com/scipy/scipy/pull/10022>`__: BENCH: Increase cython version in asv to fix benchmark builds * `#10023 <https://github.com/scipy/scipy/pull/10023>`__: BUG: Avoid exponnorm producing nan for small K values. * `#10025 <https://github.com/scipy/scipy/pull/10025>`__: BUG: optimize: tweaked linprog status 4 error message * `#10026 <https://github.com/scipy/scipy/pull/10026>`__: ENH: optimize: use SuiteSparse in linprog interior-point when... * `#10027 <https://github.com/scipy/scipy/pull/10027>`__: MAINT: cluster: clean up the use of malloc() in the function... * `#10028 <https://github.com/scipy/scipy/pull/10028>`__: Fix rotate invalid plane check * `#10040 <https://github.com/scipy/scipy/pull/10040>`__: MAINT: fix pratt method of wilcox test in scipy.stats * `#10041 <https://github.com/scipy/scipy/pull/10041>`__: MAINT: special: Fix a warning generated when building the AMOS... * `#10044 <https://github.com/scipy/scipy/pull/10044>`__: DOC: fix up spatial.transform.Rotation docstrings * `#10047 <https://github.com/scipy/scipy/pull/10047>`__: MAINT: interpolate: Fix a few build warnings. * `#10051 <https://github.com/scipy/scipy/pull/10051>`__: Add project_urls to setup * `#10052 <https://github.com/scipy/scipy/pull/10052>`__: don't set flag to "converged" if max iter exceeded * `#10054 <https://github.com/scipy/scipy/pull/10054>`__: MAINT: signal: Fix a few build warnings and modernize some C... * `#10056 <https://github.com/scipy/scipy/pull/10056>`__: BUG: Ensure factorial is not too large in kendaltau * `#10058 <https://github.com/scipy/scipy/pull/10058>`__: Small speedup in samping from ortho and special_ortho groups * `#10059 <https://github.com/scipy/scipy/pull/10059>`__: BUG: optimize: fix #10038 by increasing tol * `#10061 <https://github.com/scipy/scipy/pull/10061>`__: BLD: DOC: make building docs easier by parsing python version. * `#10064 <https://github.com/scipy/scipy/pull/10064>`__: ENH: Significant speedup for ortho and special ortho group * `#10065 <https://github.com/scipy/scipy/pull/10065>`__: DOC: Reword parameter descriptions in \`optimize.root_scalar\` * `#10066 <https://github.com/scipy/scipy/pull/10066>`__: BUG: signal: Fix error raised by savgol_coeffs when deriv > polyorder. * `#10067 <https://github.com/scipy/scipy/pull/10067>`__: MAINT: Fix the cutoff value inconsistency for pinv2 and pinvh * `#10072 <https://github.com/scipy/scipy/pull/10072>`__: BUG: stats: Fix boxcox_llf to avoid loss of precision. * `#10075 <https://github.com/scipy/scipy/pull/10075>`__: ENH: Add wrappers for ?syconv routines * `#10076 <https://github.com/scipy/scipy/pull/10076>`__: BUG: optimize: fix curve_fit for mixed float32/float64 input * `#10077 <https://github.com/scipy/scipy/pull/10077>`__: DOC: Replace undefined \`k\` in \`interpolate.splev\` docstring * `#10079 <https://github.com/scipy/scipy/pull/10079>`__: DOC: Fixed typo, rearranged some doc of stats.morestats.wilcoxon. * `#10080 <https://github.com/scipy/scipy/pull/10080>`__: TST: install scikit-sparse for full TravisCI tests * `#10083 <https://github.com/scipy/scipy/pull/10083>`__: Clean \`\`_clean_inputs\`\` in optimize.linprog * `#10088 <https://github.com/scipy/scipy/pull/10088>`__: ENH: optimize: linprog test CHOLMOD/UMFPACK solvers when available * `#10090 <https://github.com/scipy/scipy/pull/10090>`__: MAINT: Fix CubicSplinerInterpolator for pandas * `#10091 <https://github.com/scipy/scipy/pull/10091>`__: MAINT: improve logcdf and logsf of hypergeometric distribution * `#10095 <https://github.com/scipy/scipy/pull/10095>`__: MAINT: Clean \`\`_clean_inputs\`\` in linprog * `#10116 <https://github.com/scipy/scipy/pull/10116>`__: MAINT: update scipy-sphinx-theme * `#10135 <https://github.com/scipy/scipy/pull/10135>`__: BUG: fix linprog revised simplex docstring problem failure
Checksums =========
MD5 ~~~
209c50a628a624fc82535299f5913d65 scipy-1.3.0-cp35-cp35m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl 54e6fdb6aacbcaeff6dc86fc736cf39a scipy-1.3.0-cp35-cp35m-manylinux1_i686.whl 752f9cae504e7ea06cd818fc74b829c0 scipy-1.3.0-cp35-cp35m-manylinux1_x86_64.whl c7a0ff2b530570feefa8102813fc6dd1 scipy-1.3.0-cp35-cp35m-win32.whl 1c53ccff157fe23b165e53fba87c37e0 scipy-1.3.0-cp35-cp35m-win_amd64.whl 6762dc85ef6fe357e5710c32451b29a2 scipy-1.3.0-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl 03d9c756b5bc836194cd5d13cd73e3fe scipy-1.3.0-cp36-cp36m-manylinux1_i686.whl 1e5af3fade676e5a588d40d785e7ee4d scipy-1.3.0-cp36-cp36m-manylinux1_x86_64.whl fe130e4cb77078c6a886795bcf1fa66d scipy-1.3.0-cp36-cp36m-win32.whl f62f60ea0397b7aa9a90fb610fc54d33 scipy-1.3.0-cp36-cp36m-win_amd64.whl a1ec52b1b162bb7ae0d0ea76438e35ce scipy-1.3.0-cp37-cp37m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl 260d182114edaed177c64d60776ceee6 scipy-1.3.0-cp37-cp37m-manylinux1_i686.whl 38c5a038504e03b503f7674b30218068 scipy-1.3.0-cp37-cp37m-manylinux1_x86_64.whl 2390fdb5a4330c54c2a5308afe959bb9 scipy-1.3.0-cp37-cp37m-win32.whl 452157882a9f180914906df9bbf9d7bf scipy-1.3.0-cp37-cp37m-win_amd64.whl c6876673adf7e9e6c0307beaca784ad2 scipy-1.3.0.tar.gz e7153c2eb276bc303699b75858db6276 scipy-1.3.0.tar.xz 16b9e6a0ea8bdcf2ea72fda5975a252c scipy-1.3.0.zip
SHA256 ~~~~~~
4907040f62b91c2e170359c3d36c000af783f0fa1516a83d6c1517cde0af5340 scipy-1.3.0-cp35-cp35m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl 1db9f964ed9c52dc5bd6127f0dd90ac89791daa690a5665cc01eae185912e1ba scipy-1.3.0-cp35-cp35m-manylinux1_i686.whl adadeeae5500de0da2b9e8dd478520d0a9945b577b2198f2462555e68f58e7ef scipy-1.3.0-cp35-cp35m-manylinux1_x86_64.whl 03b1e0775edbe6a4c64effb05fff2ce1429b76d29d754aa5ee2d848b60033351 scipy-1.3.0-cp35-cp35m-win32.whl a7695a378c2ce402405ea37b12c7a338a8755e081869bd6b95858893ceb617ae scipy-1.3.0-cp35-cp35m-win_amd64.whl 826b9f5fbb7f908a13aa1efd4b7321e36992f5868d5d8311c7b40cf9b11ca0e7 scipy-1.3.0-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl b283a76a83fe463c9587a2c88003f800e08c3929dfbeba833b78260f9c209785 scipy-1.3.0-cp36-cp36m-manylinux1_i686.whl db61a640ca20f237317d27bc658c1fc54c7581ff7f6502d112922dc285bdabee scipy-1.3.0-cp36-cp36m-manylinux1_x86_64.whl 409846be9d6bdcbd78b9e5afe2f64b2da5a923dd7c1cd0615ce589489533fdbb scipy-1.3.0-cp36-cp36m-win32.whl c19a7389ab3cd712058a8c3c9ffd8d27a57f3d84b9c91a931f542682bb3d269d scipy-1.3.0-cp36-cp36m-win_amd64.whl 09d008237baabf52a5d4f5a6fcf9b3c03408f3f61a69c404472a16861a73917e scipy-1.3.0-cp37-cp37m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl a84c31e8409b420c3ca57fd30c7589378d6fdc8d155d866a7f8e6e80dec6fd06 scipy-1.3.0-cp37-cp37m-manylinux1_i686.whl c5ea60ece0c0c1c849025bfc541b60a6751b491b6f11dd9ef37ab5b8c9041921 scipy-1.3.0-cp37-cp37m-manylinux1_x86_64.whl 6c0543f2fdd38dee631fb023c0f31c284a532d205590b393d72009c14847f5b1 scipy-1.3.0-cp37-cp37m-win32.whl 10325f0ffac2400b1ec09537b7e403419dcd25d9fee602a44e8a32119af9079e scipy-1.3.0-cp37-cp37m-win_amd64.whl c3bb4bd2aca82fb498247deeac12265921fe231502a6bc6edea3ee7fe6c40a7a scipy-1.3.0.tar.gz ae105c28c1fdb480bf22fd1b1392eeb8679f3c0c8917c87fca8aabf323918455 scipy-1.3.0.tar.xz b711ec1567439a1abfac59321b73a40de70a93ace4a33be26001eb4b12206356 scipy-1.3.0.zip -----BEGIN PGP SIGNATURE----- Version: GnuPG v2
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