On 29/09/2013 23:01, Ralf Gommers wrote:
On Sun, Sep 29, 2013 at 10:59 PM, xavier.gnata@gmail.com <mailto:xavier.gnata@gmail.com> <xavier.gnata@gmail.com <mailto:xavier.gnata@gmail.com>> wrote:
Hi,
I have compiled numpy1.9.0.dev-e051ff following http://osdf.github.io/blog/numpyscipy-with-openblas-for-ubuntu-1204-second-t... to unable Openblas. It looks ok (run=5277 errors=0 failures=0 and Openblas is used) but now scipy git complains like this:
"python setup.py build Cythonizing sources scipy/interpolate/interpnd.pyx has not changed scipy/ndimage/src/_ni_label.pyx has not changed scipy/stats/vonmises_cython.pyx has not changed scipy/stats/_rank.pyx has not changed scipy/signal/_spectral.pyx has not changed scipy/special/_ufuncs_cxx.pyx has not changed scipy/special/_ufuncs.pyx has not changed scipy/cluster/_vq_rewrite.pyx has not changed scipy/sparse/csgraph/_shortest_path.pyx has not changed scipy/sparse/csgraph/_traversal.pyx has not changed scipy/sparse/csgraph/_min_spanning_tree.pyx has not changed scipy/sparse/csgraph/_tools.pyx has not changed scipy/io/matlab/mio5_utils.pyx has not changed scipy/io/matlab/mio_utils.pyx has not changed scipy/io/matlab/streams.pyx has not changed scipy/spatial/ckdtree.pyx has not changed scipy/spatial/qhull.pyx has not changed /usr/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) blas_opt_info: blas_mkl_info: Disabled blas_mkl_info: (MKL is None) Disabled blas_mkl_info: (MKL is None) libraries mkl,vml,guide not found in [] NOT AVAILABLE
openblas_info: FOUND: libraries = ['openblas'] library_dirs = ['/usr/local/lib'] language = f77
FOUND: libraries = ['openblas'] library_dirs = ['/usr/local/lib'] language = f77
Traceback (most recent call last): File "setup.py", line 230, in <module> setup_package() File "setup.py", line 227, in setup_package setup(**metadata) File "/usr/local/lib/python2.7/dist-packages/numpy/distutils/core.py", line 135, in setup config = configuration() File "setup.py", line 170, in configuration config.add_subpackage('scipy') File "/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 966, in add_subpackage caller_level = 2) File "/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 935, in get_subpackage caller_level = caller_level + 1) File "/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 872, in _get_configuration_from_setup_py config = setup_module.configuration(*args) File "scipy/setup.py", line 15, in configuration config.add_subpackage('lib') File "/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 966, in add_subpackage caller_level = 2) File "/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 935, in get_subpackage caller_level = caller_level + 1) File "/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 872, in _get_configuration_from_setup_py config = setup_module.configuration(*args) File "scipy/lib/setup.py", line 9, in configuration config.add_subpackage('blas') File "/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 966, in add_subpackage caller_level = 2) File "/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 935, in get_subpackage caller_level = caller_level + 1) File "/usr/local/lib/python2.7/dist-packages/numpy/distutils/misc_util.py", line 872, in _get_configuration_from_setup_py config = setup_module.configuration(*args) File "scipy/lib/blas/setup.py", line 22, in configuration from scipy._build_utils import get_g77_abi_wrappers File "/usr/local/src/scipy/scipy/__init__.py", line 77, in <module> from numpy import oldnumeric ImportError: cannot import name oldnumeric "
What's going on with oldnumeric?
You just picked a bad day to update numpy. See https://github.com/numpy/numpy/pull/3638 for a 1-line workaround. Should be fixed in numpy master soon.
Ralf
OK sorry for the noise. xavier