but it gave following errorhi david,tried as you suggested
---------------------------------------------------------------------------------------------------------------------------------
)for i in xrange(pooled_shape[1]):
for j in xrange(pooled_shape[2]):
for k in xrange(pooled_shape[3]):
for l in xrange(pooled_shape[4]):
pooled[0][i][j][k][l]=math.tanh((numpy.sum(conv_out[0][i][j][k*3][l*3:(l+1)*3])+numpy.sum(conv_out[0][i][j][k*3+1][l*3:(l+1)*3])+numpy.sum(conv_out[0][i][j][k*3+2][l*3:(l+1)*3]))/9.0+b[i][j])You should get a speed up by accessing the arrays in a more efficient way:
pooled[0, i, j, k, l] = math.tanh((numpy.sum(conv_out[0, i, j, k*3, l*3:(l+1)*3]) + numpy.sum(conv_out[0, i, j, k*3+1, l*3:(l+1)*3]) + numpy.sum(conv_out[0, i, j, k*3+2, l*3:(l+1)*3]))/9.0+b[i, j])
In fact:
numpy.sum(conv_out[0, i, j, k*3, l*3:(l+1)*3]) + numpy.sum(conv_out[0, i, j, k*3+1, l*3:(l+1)*3])
seems equivalent to:numpy.sum(conv_out[0, i, j, k*3: k*3 +1, l*3:(l+1)*3])To take the last one into account:
vec = numpy.sum(conv_out[0, i, j, k*3: k*3 + 2, l*3:(l+1)*3], axis=-1)
pooled[0, i, j, k, l] = vec[0] + vec[1] + vec[2] / 9.0And you can probably get rid of the i and j indexes all together. Something like this should work (untested):
for k in...for l in...
output = numpy.sum(conv_out[0, :, :, k*3: k*3 +1, l*3:(l+1)*3]), axis=-1)output += numpy.sum(conv_out[0, :, :, k*3 + 2, l*3 : (l+1)*3])), axis=-1)/9.0
output += bpooled[0, :, :, k, l] = numpy.tanh(output)
for i in xrange(self.pooled_shape[1]):
for j in xrange(self.pooled_shape[2]):
for k in xrange(self.pooled_shape[3]):
for l in xrange(self.pooled_shape[4]):
#-- commented-- self.pooled[0][i][j][k][l]=math.tanh((numpy.sum(self.conv_out[0][i][j][k*3][l*3:(l+1)*3])+numpy.sum(self.conv_out[0][i][j][k*3+1][l*3:(l+1)*3])+numpy.sum(self.conv_out[0][i][j][k*3+2][l*3:(l+1)*3]))/9.0+self.b[i][j])
vec = numpy.sum(self.conv_out[0, i, j, k*3: k*3 + 2, l*3:(l+1)*3], axis=-1)
self.pooled[0, i, j, k, l] = math.tanh((vec[0] + vec[1] + vec[2] )/ 9.0+self.b[i][j])
----------------------------------------------------------------------------------
Traceback (most recent call last):
File "3dcnn_test.py", line 401, in <module>
check()
File "3dcnn_test.py", line 392, in check
layer1.change_input(numpy.reshape(test_set_x[i],(1,1,9,60,80)))
File "3dcnn_test.py", line 77, in change_input
self.pooled[0, i, j, k, l] = math.tanh((vec[0] + vec[1] + vec[2] )/ 9.0+self.b[i][j])
IndexError: index out of boundswith regards..M. Sai RajeswarM-tech Computer TechnologyIIT Delhi
----------------------------------Cogito Ergo Sum---------On Sun, Jul 13, 2014 at 9:08 PM, Daπid <davidmenhur@gmail.com> wrote:On 13 July 2014 14:28, Sai Rajeshwar <rajsai24@gmail.com> wrote:
2)for i in xrange(pooled_shape[1]):
for j in xrange(pooled_shape[2]):
for k in xrange(pooled_shape[3]):
for l in xrange(pooled_shape[4]):
pooled[0][i][j][k][l]=math.tanh((numpy.sum(conv_out[0][i][j][k*3][l*3:(l+1)*3])+numpy.sum(conv_out[0][i][j][k*3+1][l*3:(l+1)*3])+numpy.sum(conv_out[0][i][j][k*3+2][l*3:(l+1)*3]))/9.0+b[i][j])You should get a speed up by accessing the arrays in a more efficient way:
pooled[0, i, j, k, l] = math.tanh((numpy.sum(conv_out[0, i, j, k*3, l*3:(l+1)*3]) + numpy.sum(conv_out[0, i, j, k*3+1, l*3:(l+1)*3]) + numpy.sum(conv_out[0, i, j, k*3+2, l*3:(l+1)*3]))/9.0+b[i, j])
In fact:
numpy.sum(conv_out[0, i, j, k*3, l*3:(l+1)*3]) + numpy.sum(conv_out[0, i, j, k*3+1, l*3:(l+1)*3])seems equivalent to:numpy.sum(conv_out[0, i, j, k*3: k*3 +1, l*3:(l+1)*3])To take the last one into account:
vec = numpy.sum(conv_out[0, i, j, k*3: k*3 + 2, l*3:(l+1)*3], axis=-1)
pooled[0, i, j, k, l] = vec[0] + vec[1] + vec[2] / 9.0And you can probably get rid of the i and j indexes all together. Something like this should work (untested):
for k in...for l in...
output = numpy.sum(conv_out[0, :, :, k*3: k*3 +1, l*3:(l+1)*3]), axis=-1)output += numpy.sum(conv_out[0, :, :, k*3 + 2, l*3 : (l+1)*3])), axis=-1)/9.0
output += b
pooled[0, :, :, k, l] = numpy.tanh(output)In this case, one of the loops seems a great target for parallelisation. Also, Cython should help reduce the loop overhead.
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