Hi I am part of the Clear Linux (clearlinux.org) OS project . I wonder how to link scipy to openblas. I have read in some parts that if numpy is linked to openblas by default scipy gets linked. However I wonder if there is any specific way to tell scipy to be linked agains openblas library. This is our config log gcc -pthread /tmp/tmp2f_4k1/tmp/tmp2f_4k1/source.o -L/usr/lib64 -lopenblas -o /tmp/tmp2f_4k1/a.out libraries openblas not found in ['', ''] Runtime library openblas was not found. Ignoring FOUND: libraries = ['openblas', 'openblas'] library_dirs = ['/usr/lib64'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: libraries = ['openblas', 'openblas'] library_dirs = ['/usr/lib64'] language = c define_macros = [('HAVE_CBLAS', None)] Running from scipy source directory. Splitting linalg.interpolative Fortran source files blas_opt_info: blas_mkl_info: libraries mkl,vml,guide not found in ['/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_info: libraries openblas not found in ['', ''] Runtime library openblas was not found. Ignoring libraries gfortran not found in ['', ''] Runtime library gfortran was not found. Ignoring FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/lib64'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/lib64'] language = c define_macros = [('HAVE_CBLAS', None)] This is due to the fact that our openblas is linked to avx technology and it boost the performance of math funtions form numpy and R: https://01.org/blogs/2016/improving-python-performance-scientific-tools-and-... Thanks for the help Victor Rodriguez
On Thu, Aug 4, 2016 at 6:42 PM, Victor Rodriguez <vm.rod25@gmail.com> wrote:
Hi
I am part of the Clear Linux (clearlinux.org) OS project . I wonder how to link scipy to openblas. I have read in some parts that if numpy is linked to openblas by default scipy gets linked. However I wonder if there is any specific way to tell scipy to be linked agains openblas library.
Rename site.cfg.example to site.cfg and uncomment and edit the OpenBLAS section to point to the right paths. Here: https://github.com/scipy/scipy/blob/master/site.cfg.example#L103 Ralf
This is our config log
gcc -pthread /tmp/tmp2f_4k1/tmp/tmp2f_4k1/source.o -L/usr/lib64 -lopenblas -o /tmp/tmp2f_4k1/a.out libraries openblas not found in ['', ''] Runtime library openblas was not found. Ignoring FOUND: libraries = ['openblas', 'openblas'] library_dirs = ['/usr/lib64'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: libraries = ['openblas', 'openblas'] library_dirs = ['/usr/lib64'] language = c define_macros = [('HAVE_CBLAS', None)] Running from scipy source directory. Splitting linalg.interpolative Fortran source files blas_opt_info: blas_mkl_info: libraries mkl,vml,guide not found in ['/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_info: libraries openblas not found in ['', ''] Runtime library openblas was not found. Ignoring libraries gfortran not found in ['', ''] Runtime library gfortran was not found. Ignoring FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/lib64'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/lib64'] language = c define_macros = [('HAVE_CBLAS', None)]
This is due to the fact that our openblas is linked to avx technology and it boost the performance of math funtions form numpy and R:
https://01.org/blogs/2016/improving-python-performance- scientific-tools-and-libraries
Thanks for the help
Victor Rodriguez _______________________________________________ SciPy-Dev mailing list SciPy-Dev@scipy.org https://mail.scipy.org/mailman/listinfo/scipy-dev
thanks I will try this :) On Thu, Aug 4, 2016 at 1:51 PM, Ralf Gommers <ralf.gommers@gmail.com> wrote:
On Thu, Aug 4, 2016 at 6:42 PM, Victor Rodriguez <vm.rod25@gmail.com> wrote:
Hi
I am part of the Clear Linux (clearlinux.org) OS project . I wonder how to link scipy to openblas. I have read in some parts that if numpy is linked to openblas by default scipy gets linked. However I wonder if there is any specific way to tell scipy to be linked agains openblas library.
Rename site.cfg.example to site.cfg and uncomment and edit the OpenBLAS section to point to the right paths. Here: https://github.com/scipy/scipy/blob/master/site.cfg.example#L103
Ralf
This is our config log
gcc -pthread /tmp/tmp2f_4k1/tmp/tmp2f_4k1/source.o -L/usr/lib64 -lopenblas -o /tmp/tmp2f_4k1/a.out libraries openblas not found in ['', ''] Runtime library openblas was not found. Ignoring FOUND: libraries = ['openblas', 'openblas'] library_dirs = ['/usr/lib64'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: libraries = ['openblas', 'openblas'] library_dirs = ['/usr/lib64'] language = c define_macros = [('HAVE_CBLAS', None)] Running from scipy source directory. Splitting linalg.interpolative Fortran source files blas_opt_info: blas_mkl_info: libraries mkl,vml,guide not found in ['/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_info: libraries openblas not found in ['', ''] Runtime library openblas was not found. Ignoring libraries gfortran not found in ['', ''] Runtime library gfortran was not found. Ignoring FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/lib64'] language = c define_macros = [('HAVE_CBLAS', None)] FOUND: libraries = ['openblas', 'gfortran', 'openblas', 'gfortran'] library_dirs = ['/usr/lib64'] language = c define_macros = [('HAVE_CBLAS', None)]
This is due to the fact that our openblas is linked to avx technology and it boost the performance of math funtions form numpy and R:
https://01.org/blogs/2016/improving-python-performance-scientific-tools-and-...
Thanks for the help
Victor Rodriguez _______________________________________________ SciPy-Dev mailing list SciPy-Dev@scipy.org https://mail.scipy.org/mailman/listinfo/scipy-dev
_______________________________________________ SciPy-Dev mailing list SciPy-Dev@scipy.org https://mail.scipy.org/mailman/listinfo/scipy-dev
participants (2)
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Ralf Gommers -
Victor Rodriguez