scipy installation error
Hi I try to install scpy 10.1 (or 11) on debian testing, but get the following error: error: Command "gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/usr/include/python2.6 -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/lib/pymodules/python2.6/numpy/core/include -c scipy/spatial/qhull/src/poly.c -o build/temp.linux-i686-2.6/scipy/spatial/qhull/src/poly.o" failed with exit status 1 Does anybody knows a solution for it? Thanks. Petro
Hi Petro, On Sun, Aug 5, 2012 at 12:14 PM, <x.piter@gmail.com> wrote:
Hi I try to install scpy 10.1 (or 11) on debian testing, but get the following error: error: Command "gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/usr/include/python2.6 -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/lib/pymodules/python2.6/numpy/core/include -c scipy/spatial/qhull/src/poly.c -o build/temp.linux-i686-2.6/scipy/spatial/qhull/src/poly.o" failed with exit status 1 Does anybody knows a solution for it?
We would need a bit more context to help you there. Can you give the rest of the log ? David
David Cournapeau <cournape@gmail.com> writes:
We would need a bit more context to help you there. Can you give the rest of the log ? Hi, thanks for these followups. Here is the end part were troubles start I am an illiterate in C :(
########################################## compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC compile options: '-I/usr/include/python2.6 -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/lib/pymodules/python2.6/numpy/core/include -c' gcc: scipy/spatial/qhull/src/poly.c In file included from /usr/include/python2.6/Python.h:8, from scipy/spatial/qhull/src/mem.h:22, from scipy/spatial/qhull/src/qhull_a.h:31, from scipy/spatial/qhull/src/poly.c:17: /usr/include/python2.6/pyconfig.h:1031:1: warning: "_POSIX_C_SOURCE" redefined In file included from /usr/include/time.h:28, from scipy/spatial/qhull/src/user.h:27, from scipy/spatial/qhull/src/libqhull.h:34, from scipy/spatial/qhull/src/qhull_a.h:27, from scipy/spatial/qhull/src/poly.c:17: /usr/include/features.h:210:1: warning: this is the location of the previous definition In file included from scipy/spatial/qhull/src/qhull_a.h:31, from scipy/spatial/qhull/src/poly.c:17: scipy/spatial/qhull/src/mem.h:23:32: error: numpy/ndarraytypes.h: No such file or directory In file included from scipy/spatial/qhull/src/qhull_a.h:31, from scipy/spatial/qhull/src/poly.c:17: scipy/spatial/qhull/src/mem.h:85: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘ptr_intT’ scipy/spatial/qhull/src/poly.c: In function ‘qh_gethash’: scipy/spatial/qhull/src/poly.c:407: error: ‘ptr_intT’ undeclared (first use in this function) scipy/spatial/qhull/src/poly.c:407: error: (Each undeclared identifier is reported only once scipy/spatial/qhull/src/poly.c:407: error: for each function it appears in.) scipy/spatial/qhull/src/poly.c:407: error: expected ‘;’ before ‘hash’ scipy/spatial/qhull/src/poly.c:417: error: ‘hash’ undeclared (first use in this function) scipy/spatial/qhull/src/poly.c:417: error: expected ‘;’ before ‘skipelem’ scipy/spatial/qhull/src/poly.c:420: error: expected ‘;’ before ‘elemp’ scipy/spatial/qhull/src/poly.c:423: error: expected ‘;’ before ‘elemp’ scipy/spatial/qhull/src/poly.c:427: error: expected ‘;’ before ‘elemp’ scipy/spatial/qhull/src/poly.c:431: error: expected ‘;’ before ‘elemp’ scipy/spatial/qhull/src/poly.c:435: error: expected ‘;’ before ‘elemp’ scipy/spatial/qhull/src/poly.c:443: error: ‘elem’ undeclared (first use in this function) scipy/spatial/qhull/src/poly.c:443: error: expected ‘)’ before ‘skipelem’ scipy/spatial/qhull/src/poly.c: In function ‘qh_pointid’: scipy/spatial/qhull/src/poly.c:1047: error: ‘ptr_intT’ undeclared (first use in this function) scipy/spatial/qhull/src/poly.c:1047: error: expected ‘;’ before ‘offset’ scipy/spatial/qhull/src/poly.c:1055: error: ‘offset’ undeclared (first use in this function) scipy/spatial/qhull/src/poly.c:1056: error: ‘id’ undeclared (first use in this function) In file included from /usr/include/python2.6/Python.h:8, from scipy/spatial/qhull/src/mem.h:22, from scipy/spatial/qhull/src/qhull_a.h:31, from scipy/spatial/qhull/src/poly.c:17: /usr/include/python2.6/pyconfig.h:1031:1: warning: "_POSIX_C_SOURCE" redefined In file included from /usr/include/time.h:28, from scipy/spatial/qhull/src/user.h:27, from scipy/spatial/qhull/src/libqhull.h:34, from scipy/spatial/qhull/src/qhull_a.h:27, from scipy/spatial/qhull/src/poly.c:17: /usr/include/features.h:210:1: warning: this is the location of the previous definition In file included from scipy/spatial/qhull/src/qhull_a.h:31, from scipy/spatial/qhull/src/poly.c:17: scipy/spatial/qhull/src/mem.h:23:32: error: numpy/ndarraytypes.h: No such file or directory In file included from scipy/spatial/qhull/src/qhull_a.h:31, from scipy/spatial/qhull/src/poly.c:17: scipy/spatial/qhull/src/mem.h:85: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘ptr_intT’ scipy/spatial/qhull/src/poly.c: In function ‘qh_gethash’: scipy/spatial/qhull/src/poly.c:407: error: ‘ptr_intT’ undeclared (first use in this function) scipy/spatial/qhull/src/poly.c:407: error: (Each undeclared identifier is reported only once scipy/spatial/qhull/src/poly.c:407: error: for each function it appears in.) scipy/spatial/qhull/src/poly.c:407: error: expected ‘;’ before ‘hash’ scipy/spatial/qhull/src/poly.c:417: error: ‘hash’ undeclared (first use in this function) scipy/spatial/qhull/src/poly.c:417: error: expected ‘;’ before ‘skipelem’ scipy/spatial/qhull/src/poly.c:420: error: expected ‘;’ before ‘elemp’ scipy/spatial/qhull/src/poly.c:423: error: expected ‘;’ before ‘elemp’ scipy/spatial/qhull/src/poly.c:427: error: expected ‘;’ before ‘elemp’ scipy/spatial/qhull/src/poly.c:431: error: expected ‘;’ before ‘elemp’ scipy/spatial/qhull/src/poly.c:435: error: expected ‘;’ before ‘elemp’ scipy/spatial/qhull/src/poly.c:443: error: ‘elem’ undeclared (first use in this function) scipy/spatial/qhull/src/poly.c:443: error: expected ‘)’ before ‘skipelem’ scipy/spatial/qhull/src/poly.c: In function ‘qh_pointid’: scipy/spatial/qhull/src/poly.c:1047: error: ‘ptr_intT’ undeclared (first use in this function) scipy/spatial/qhull/src/poly.c:1047: error: expected ‘;’ before ‘offset’ scipy/spatial/qhull/src/poly.c:1055: error: ‘offset’ undeclared (first use in this function) scipy/spatial/qhull/src/poly.c:1056: error: ‘id’ undeclared (first use in this function) error: Command "gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/usr/include/python2.6 -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/lib/pymodules/python2.6/numpy/core/include -c scipy/spatial/qhull/src/poly.c -o build/temp.linux-i686-2.6/scipy/spatial/qhull/src/poly.o" failed with exit status 1
05.08.2012 13:14, x.piter@gmail.com kirjoitti:
Hi I try to install scpy 10.1 (or 11) on debian testing, but get the following error: error: Command "gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC -I/usr/include/python2.6 -I/usr/lib/pymodules/python2.6/numpy/core/include -I/usr/lib/pymodules/python2.6/numpy/core/include -c scipy/spatial/qhull/src/poly.c -o build/temp.linux-i686-2.6/scipy/spatial/qhull/src/poly.o" failed with exit status 1 Does anybody knows a solution for it? [clip]
Paste the whole build log on gist.github.com or pastebin. It's impossible to say much based on this snippet. -- Pauli Virtanen
participants (3)
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David Cournapeau -
Pauli Virtanen -
x.piter@gmail.com