Error in scipy.test(10) even after compiling successfully- Mac OS X 10.4.11 Apple GCC 4.0.1
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Hello all, After building scipy, I ran the scipy tests and got this error in check_integer: ====================================================================== ERROR: check_integer (scipy.io.tests.test_array_import.TestReadArray) ---------------------------------------------------------------------- Traceback (most recent call last): File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/io/tests/test_array_import.py", line 55, in check_integer from scipy import stats File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/stats/__init__.py", line 7, in <module> from stats import * File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/stats/stats.py", line 191, in <module> import scipy.special as special File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/special/__init__.py", line 8, in <module> from basic import * File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/special/basic.py", line 8, in <module> from _cephes import * ImportError: dlopen(/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/special/_cephes.so, 2): Symbol not found: __gfortran_pow_r8_i4 Referenced from: /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/special/_cephes.so Expected in: dynamic lookup It would appear it's not finding a symbol for gfrotran in one of the files, and this in turn makes it impossible to import _cephes. How would I go about remedying this?
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Joshua Lippai wrote:
Hello all,
After building scipy, I ran the scipy tests and got this error in check_integer:
====================================================================== ERROR: check_integer (scipy.io.tests.test_array_import.TestReadArray) ---------------------------------------------------------------------- Traceback (most recent call last): File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/io/tests/test_array_import.py", line 55, in check_integer from scipy import stats File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/stats/__init__.py", line 7, in <module> from stats import * File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/stats/stats.py", line 191, in <module> import scipy.special as special File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/special/__init__.py", line 8, in <module> from basic import * File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/special/basic.py", line 8, in <module> from _cephes import * ImportError: dlopen(/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/special/_cephes.so, 2): Symbol not found: __gfortran_pow_r8_i4 Referenced from: /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/special/_cephes.so Expected in: dynamic lookup
It would appear it's not finding a symbol for gfrotran in one of the files, and this in turn makes it impossible to import _cephes. How would I go about remedying this?
This symbol is in the gfortran runtime. We need the complete build log to be sure about the exact problem, but I expect some mismatch between fortran compilers (do you have several fortran compilers on your machine ?). cheers, David
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On Nov 29, 2007 5:58 PM, David Cournapeau <david@ar.media.kyoto-u.ac.jp> wrote:
Joshua Lippai wrote:
Hello all,
After building scipy, I ran the scipy tests and got this error in check_integer:
====================================================================== ERROR: check_integer (scipy.io.tests.test_array_import.TestReadArray) ---------------------------------------------------------------------- Traceback (most recent call last): File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/io/tests/test_array_import.py", line 55, in check_integer from scipy import stats File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/stats/__init__.py", line 7, in <module> from stats import * File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/stats/stats.py", line 191, in <module> import scipy.special as special File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/special/__init__.py", line 8, in <module> from basic import * File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/special/basic.py", line 8, in <module> from _cephes import * ImportError: dlopen(/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/special/_cephes.so, 2): Symbol not found: __gfortran_pow_r8_i4 Referenced from: /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/special/_cephes.so Expected in: dynamic lookup
It would appear it's not finding a symbol for gfrotran in one of the files, and this in turn makes it impossible to import _cephes. How would I go about remedying this?
This symbol is in the gfortran runtime. We need the complete build log to be sure about the exact problem, but I expect some mismatch between fortran compilers (do you have several fortran compilers on your machine ?).
cheers,
David
_______________________________________________ SciPy-user mailing list SciPy-user@scipy.org http://projects.scipy.org/mailman/listinfo/scipy-user
That sounds about right... looking at the build dialog, certain commands seem to want to use gnu95 while the others want gfortran. unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options commands have different --fcompiler options: ['gfortran', 'gnu95'], using first in list as default I tried setting the --fcompiler option for all of the commands mentioned there to gfortran (at least it changed the default from gnu95 to gfortran like I wanted), but it still gives that message. Anything else I can do to make this confusion for the compiler go away? Josh
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On Dec 3, 2007 2:03 AM, Joshua Lippai <discerptor@gmail.com> wrote:
On Nov 29, 2007 5:58 PM, David Cournapeau <david@ar.media.kyoto-u.ac.jp> wrote:
Joshua Lippai wrote:
Hello all,
After building scipy, I ran the scipy tests and got this error in check_integer:
====================================================================== ERROR: check_integer (scipy.io.tests.test_array_import.TestReadArray) ---------------------------------------------------------------------- Traceback (most recent call last): File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/io/tests/test_array_import.py", line 55, in check_integer from scipy import stats File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/stats/__init__.py", line 7, in <module> from stats import * File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/stats/stats.py", line 191, in <module> import scipy.special as special File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/special/__init__.py", line 8, in <module> from basic import * File "/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/special/basic.py", line 8, in <module> from _cephes import * ImportError: dlopen(/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/special/_cephes.so, 2): Symbol not found: __gfortran_pow_r8_i4 Referenced from: /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/special/_cephes.so Expected in: dynamic lookup
It would appear it's not finding a symbol for gfrotran in one of the files, and this in turn makes it impossible to import _cephes. How would I go about remedying this?
This symbol is in the gfortran runtime. We need the complete build log to be sure about the exact problem, but I expect some mismatch between fortran compilers (do you have several fortran compilers on your machine ?).
cheers,
David
_______________________________________________ SciPy-user mailing list SciPy-user@scipy.org http://projects.scipy.org/mailman/listinfo/scipy-user
That sounds about right... looking at the build dialog, certain commands seem to want to use gnu95 while the others want gfortran.
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options commands have different --fcompiler options: ['gfortran', 'gnu95'], using first in list as default
I tried setting the --fcompiler option for all of the commands mentioned there to gfortran (at least it changed the default from gnu95 to gfortran like I wanted), but it still gives that message. Anything else I can do to make this confusion for the compiler go away?
Josh
Here's the full dialog for build and install, btw (and it seems to not give me that message anymore, but the error still shows up in scipy.test(1,10)): Computer:~/python_sources/scipy Josh$ CC=/usr/bin/gcc CXX=/usr/bin/g++ python setup.py build_src config_fc --fcompiler=gfortran config --fcompiler=gfortran build_clib --fcompiler=gfortran build_ext --fcompiler=gfortran build --fcompiler=gfortran mkl_info: libraries mkl,vml,guide not found in /Library/Frameworks/Python.framework/Versions/2.5/lib libraries mkl,vml,guide not found in /usr/local/lib libraries mkl,vml,guide not found in /usr/lib NOT AVAILABLE fftw3_info: libraries fftw3 not found in /Library/Frameworks/Python.framework/Versions/2.5/lib FOUND: libraries = ['fftw3'] library_dirs = ['/usr/local/lib'] define_macros = [('SCIPY_FFTW3_H', None)] include_dirs = ['/usr/local/include'] djbfft_info: NOT AVAILABLE blas_opt_info: FOUND: extra_link_args = ['-Wl,-framework', '-Wl,Accelerate'] define_macros = [('NO_ATLAS_INFO', 3)] extra_compile_args = ['-faltivec', '-I/System/Library/Frameworks/vecLib.framework/Headers'] lapack_opt_info: FOUND: extra_link_args = ['-Wl,-framework', '-Wl,Accelerate'] define_macros = [('NO_ATLAS_INFO', 3)] extra_compile_args = ['-faltivec'] non-existing path in 'scipy/linsolve': 'tests' umfpack_info: libraries umfpack not found in /Library/Frameworks/Python.framework/Versions/2.5/lib libraries umfpack not found in /usr/local/lib libraries umfpack not found in /usr/lib /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/distutils/system_info.py:414: UserWarning: UMFPACK sparse solver (http://www.cise.ufl.edu/research/sparse/umfpack/) not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [umfpack]) or by setting the UMFPACK environment variable. warnings.warn(self.notfounderror.__doc__) NOT AVAILABLE /Users/Josh/python_sources/scipy/scipy/__init__.py:18: UserWarning: Module scipy was already imported from /Users/Josh/python_sources/scipy/scipy/__init__.pyc, but /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages is being added to sys.path import pkg_resources as _pr # activate namespace packages (manipulates __path__) running build_src building py_modules sources building library "dfftpack" sources building library "linpack_lite" sources building library "mach" sources building library "quadpack" sources building library "odepack" sources building library "fitpack" sources building library "superlu_src" sources building library "odrpack" sources building library "minpack" sources building library "rootfind" sources building library "c_misc" sources building library "cephes" sources building library "mach" sources building library "toms" sources building library "amos" sources building library "cdf" sources building library "specfun" sources building library "statlib" sources building extension "scipy.cluster._vq" sources building extension "scipy.fftpack._fftpack" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.fftpack.convolve" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.integrate._quadpack" sources building extension "scipy.integrate._odepack" sources building extension "scipy.integrate.vode" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.interpolate._fitpack" sources building extension "scipy.interpolate.dfitpack" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. adding 'build/src.macosx-10.4-ppc-2.5/scipy/interpolate/dfitpack-f2pywrappers.f' to sources. building extension "scipy.io.numpyio" sources building extension "scipy.lib.blas.fblas" sources f2py options: ['skip:', ':'] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. adding 'build/src.macosx-10.4-ppc-2.5/build/src.macosx-10.4-ppc-2.5/scipy/lib/blas/fblas-f2pywrappers.f' to sources. building extension "scipy.lib.blas.cblas" sources adding 'build/src.macosx-10.4-ppc-2.5/scipy/lib/blas/cblas.pyf' to sources. f2py options: ['skip:', ':'] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.lib.lapack.flapack" sources f2py options: ['skip:', ':'] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.lib.lapack.clapack" sources adding 'build/src.macosx-10.4-ppc-2.5/scipy/lib/lapack/clapack.pyf' to sources. f2py options: ['skip:', ':'] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.lib.lapack.calc_lwork" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.lib.lapack.atlas_version" sources building extension "scipy.linalg.fblas" sources adding 'build/src.macosx-10.4-ppc-2.5/scipy/linalg/fblas.pyf' to sources. f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. adding 'build/src.macosx-10.4-ppc-2.5/build/src.macosx-10.4-ppc-2.5/scipy/linalg/fblas-f2pywrappers.f' to sources. building extension "scipy.linalg.cblas" sources adding 'build/src.macosx-10.4-ppc-2.5/scipy/linalg/cblas.pyf' to sources. f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.linalg.flapack" sources adding 'build/src.macosx-10.4-ppc-2.5/scipy/linalg/flapack.pyf' to sources. f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. adding 'build/src.macosx-10.4-ppc-2.5/build/src.macosx-10.4-ppc-2.5/scipy/linalg/flapack-f2pywrappers.f' to sources. building extension "scipy.linalg.clapack" sources adding 'build/src.macosx-10.4-ppc-2.5/scipy/linalg/clapack.pyf' to sources. f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.linalg._flinalg" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.linalg.calc_lwork" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.linalg.atlas_version" sources building extension "scipy.linalg._iterative" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.linsolve._zsuperlu" sources building extension "scipy.linsolve._dsuperlu" sources building extension "scipy.linsolve._csuperlu" sources building extension "scipy.linsolve._ssuperlu" sources building extension "scipy.linsolve.umfpack.__umfpack" sources building extension "scipy.odr.__odrpack" sources building extension "scipy.optimize._minpack" sources building extension "scipy.optimize._zeros" sources building extension "scipy.optimize._lbfgsb" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.optimize.moduleTNC" sources building extension "scipy.optimize._cobyla" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.optimize.minpack2" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.signal.sigtools" sources building extension "scipy.signal.spline" sources building extension "scipy.sparse._sparsetools" sources building extension "scipy.special._cephes" sources building extension "scipy.special.specfun" sources f2py options: ['--no-wrap-functions'] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.stats.statlib" sources f2py options: ['--no-wrap-functions'] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.stats.futil" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.stats.mvn" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. adding 'build/src.macosx-10.4-ppc-2.5/scipy/stats/mvn-f2pywrappers.f' to sources. building extension "scipy.ndimage._nd_image" sources building extension "scipy.ndimage.segment._segmenter" sources building extension "scipy.stsci.convolve._correlate" sources building extension "scipy.stsci.convolve._lineshape" sources building extension "scipy.stsci.image._combine" sources building data_files sources running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running config running build_clib customize UnixCCompiler customize UnixCCompiler using build_clib customize Gnu95FCompiler Found executable /usr/local/bin/gfortran customize Gnu95FCompiler using build_clib running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext library 'mach' defined more than once, overwriting build_info {'sources': ['scipy/integrate/mach/d1mach.f', 'scipy/integrate/mach/i1mach.f', 'scipy/integrate/mach/r1mach.f', 'scipy/integrate/mach/xerror.f'], 'config_fc': {'noopt': ('scipy/integrate/setup.pyc', 1)}, 'source_languages': ['f77']}... with {'sources': ['scipy/special/mach/d1mach.f', 'scipy/special/mach/i1mach.f', 'scipy/special/mach/r1mach.f', 'scipy/special/mach/xerror.f'], 'config_fc': {'noopt': ('scipy/special/setup.pyc', 1)}, 'source_languages': ['f77']}... extending extension 'scipy.linsolve._zsuperlu' defined_macros with [('USE_VENDOR_BLAS', 1)] extending extension 'scipy.linsolve._dsuperlu' defined_macros with [('USE_VENDOR_BLAS', 1)] extending extension 'scipy.linsolve._csuperlu' defined_macros with [('USE_VENDOR_BLAS', 1)] extending extension 'scipy.linsolve._ssuperlu' defined_macros with [('USE_VENDOR_BLAS', 1)] customize UnixCCompiler customize UnixCCompiler using build_ext customize Gnu95FCompiler customize Gnu95FCompiler using build_ext running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running build_py copying scipy/__svn_version__.py -> build/lib.macosx-10.4-ppc-2.5/scipy copying build/src.macosx-10.4-ppc-2.5/scipy/__config__.py -> build/lib.macosx-10.4-ppc-2.5/scipy copying scipy/io/mmio.py -> build/lib.macosx-10.4-ppc-2.5/scipy/io Computer:~/python_sources/scipy Josh$ sudo python setup.py install Password: mkl_info: libraries mkl,vml,guide not found in /Library/Frameworks/Python.framework/Versions/2.5/lib libraries mkl,vml,guide not found in /usr/local/lib libraries mkl,vml,guide not found in /usr/lib NOT AVAILABLE fftw3_info: libraries fftw3 not found in /Library/Frameworks/Python.framework/Versions/2.5/lib FOUND: libraries = ['fftw3'] library_dirs = ['/usr/local/lib'] define_macros = [('SCIPY_FFTW3_H', None)] include_dirs = ['/usr/local/include'] djbfft_info: NOT AVAILABLE blas_opt_info: FOUND: extra_link_args = ['-Wl,-framework', '-Wl,Accelerate'] define_macros = [('NO_ATLAS_INFO', 3)] extra_compile_args = ['-faltivec', '-I/System/Library/Frameworks/vecLib.framework/Headers'] lapack_opt_info: FOUND: extra_link_args = ['-Wl,-framework', '-Wl,Accelerate'] define_macros = [('NO_ATLAS_INFO', 3)] extra_compile_args = ['-faltivec'] non-existing path in 'scipy/linsolve': 'tests' umfpack_info: libraries umfpack not found in /Library/Frameworks/Python.framework/Versions/2.5/lib libraries umfpack not found in /usr/local/lib libraries umfpack not found in /usr/lib /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/distutils/system_info.py:414: UserWarning: UMFPACK sparse solver (http://www.cise.ufl.edu/research/sparse/umfpack/) not found. Directories to search for the libraries can be specified in the numpy/distutils/site.cfg file (section [umfpack]) or by setting the UMFPACK environment variable. warnings.warn(self.notfounderror.__doc__) NOT AVAILABLE /Users/Josh/python_sources/scipy/scipy/__init__.py:18: UserWarning: Module scipy was already imported from /Users/Josh/python_sources/scipy/scipy/__init__.pyc, but /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages is being added to sys.path import pkg_resources as _pr # activate namespace packages (manipulates __path__) running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src building py_modules sources building library "dfftpack" sources building library "linpack_lite" sources building library "mach" sources building library "quadpack" sources building library "odepack" sources building library "fitpack" sources building library "superlu_src" sources building library "odrpack" sources building library "minpack" sources building library "rootfind" sources building library "c_misc" sources building library "cephes" sources building library "mach" sources building library "toms" sources building library "amos" sources building library "cdf" sources building library "specfun" sources building library "statlib" sources building extension "scipy.cluster._vq" sources building extension "scipy.fftpack._fftpack" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.fftpack.convolve" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.integrate._quadpack" sources building extension "scipy.integrate._odepack" sources building extension "scipy.integrate.vode" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.interpolate._fitpack" sources building extension "scipy.interpolate.dfitpack" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. adding 'build/src.macosx-10.4-ppc-2.5/scipy/interpolate/dfitpack-f2pywrappers.f' to sources. building extension "scipy.io.numpyio" sources building extension "scipy.lib.blas.fblas" sources f2py options: ['skip:', ':'] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. adding 'build/src.macosx-10.4-ppc-2.5/build/src.macosx-10.4-ppc-2.5/scipy/lib/blas/fblas-f2pywrappers.f' to sources. building extension "scipy.lib.blas.cblas" sources adding 'build/src.macosx-10.4-ppc-2.5/scipy/lib/blas/cblas.pyf' to sources. f2py options: ['skip:', ':'] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.lib.lapack.flapack" sources f2py options: ['skip:', ':'] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.lib.lapack.clapack" sources adding 'build/src.macosx-10.4-ppc-2.5/scipy/lib/lapack/clapack.pyf' to sources. f2py options: ['skip:', ':'] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.lib.lapack.calc_lwork" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.lib.lapack.atlas_version" sources building extension "scipy.linalg.fblas" sources adding 'build/src.macosx-10.4-ppc-2.5/scipy/linalg/fblas.pyf' to sources. f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. adding 'build/src.macosx-10.4-ppc-2.5/build/src.macosx-10.4-ppc-2.5/scipy/linalg/fblas-f2pywrappers.f' to sources. building extension "scipy.linalg.cblas" sources adding 'build/src.macosx-10.4-ppc-2.5/scipy/linalg/cblas.pyf' to sources. f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.linalg.flapack" sources adding 'build/src.macosx-10.4-ppc-2.5/scipy/linalg/flapack.pyf' to sources. f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. adding 'build/src.macosx-10.4-ppc-2.5/build/src.macosx-10.4-ppc-2.5/scipy/linalg/flapack-f2pywrappers.f' to sources. building extension "scipy.linalg.clapack" sources adding 'build/src.macosx-10.4-ppc-2.5/scipy/linalg/clapack.pyf' to sources. f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.linalg._flinalg" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.linalg.calc_lwork" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.linalg.atlas_version" sources building extension "scipy.linalg._iterative" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.linsolve._zsuperlu" sources building extension "scipy.linsolve._dsuperlu" sources building extension "scipy.linsolve._csuperlu" sources building extension "scipy.linsolve._ssuperlu" sources building extension "scipy.linsolve.umfpack.__umfpack" sources building extension "scipy.odr.__odrpack" sources building extension "scipy.optimize._minpack" sources building extension "scipy.optimize._zeros" sources building extension "scipy.optimize._lbfgsb" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.optimize.moduleTNC" sources building extension "scipy.optimize._cobyla" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.optimize.minpack2" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.signal.sigtools" sources building extension "scipy.signal.spline" sources building extension "scipy.sparse._sparsetools" sources building extension "scipy.special._cephes" sources building extension "scipy.special.specfun" sources f2py options: ['--no-wrap-functions'] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.stats.statlib" sources f2py options: ['--no-wrap-functions'] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.stats.futil" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. building extension "scipy.stats.mvn" sources f2py options: [] adding 'build/src.macosx-10.4-ppc-2.5/fortranobject.c' to sources. adding 'build/src.macosx-10.4-ppc-2.5' to include_dirs. adding 'build/src.macosx-10.4-ppc-2.5/scipy/stats/mvn-f2pywrappers.f' to sources. building extension "scipy.ndimage._nd_image" sources building extension "scipy.ndimage.segment._segmenter" sources building extension "scipy.stsci.convolve._correlate" sources building extension "scipy.stsci.convolve._lineshape" sources building extension "scipy.stsci.image._combine" sources building data_files sources running build_py copying scipy/__svn_version__.py -> build/lib.macosx-10.4-ppc-2.5/scipy copying build/src.macosx-10.4-ppc-2.5/scipy/__config__.py -> build/lib.macosx-10.4-ppc-2.5/scipy running build_clib customize UnixCCompiler customize UnixCCompiler using build_clib customize NAGFCompiler Could not locate executable f95 customize AbsoftFCompiler Could not locate executable f90 Could not locate executable f77 customize IBMFCompiler Could not locate executable xlf90 Could not locate executable xlf customize IntelFCompiler Could not locate executable ifort Could not locate executable ifc customize GnuFCompiler Could not locate executable g77 customize Gnu95FCompiler Found executable /usr/local/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using build_clib running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext library 'mach' defined more than once, overwriting build_info {'sources': ['scipy/integrate/mach/d1mach.f', 'scipy/integrate/mach/i1mach.f', 'scipy/integrate/mach/r1mach.f', 'scipy/integrate/mach/xerror.f'], 'config_fc': {'noopt': ('scipy/integrate/setup.pyc', 1)}, 'source_languages': ['f77']}... with {'sources': ['scipy/special/mach/d1mach.f', 'scipy/special/mach/i1mach.f', 'scipy/special/mach/r1mach.f', 'scipy/special/mach/xerror.f'], 'config_fc': {'noopt': ('scipy/special/setup.pyc', 1)}, 'source_languages': ['f77']}... extending extension 'scipy.linsolve._zsuperlu' defined_macros with [('USE_VENDOR_BLAS', 1)] extending extension 'scipy.linsolve._dsuperlu' defined_macros with [('USE_VENDOR_BLAS', 1)] extending extension 'scipy.linsolve._csuperlu' defined_macros with [('USE_VENDOR_BLAS', 1)] extending extension 'scipy.linsolve._ssuperlu' defined_macros with [('USE_VENDOR_BLAS', 1)] customize UnixCCompiler customize UnixCCompiler using build_ext customize NAGFCompiler customize AbsoftFCompiler customize IBMFCompiler customize IntelFCompiler customize GnuFCompiler customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using build_ext running install_lib copying build/lib.macosx-10.4-ppc-2.5/scipy/__config__.py -> /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy copying build/lib.macosx-10.4-ppc-2.5/scipy/__svn_version__.py -> /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy copying build/lib.macosx-10.4-ppc-2.5/scipy/io/mmio.py -> /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/io byte-compiling /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/__config__.py to __config__.pyc byte-compiling /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/__svn_version__.py to __svn_version__.pyc byte-compiling /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/io/mmio.py to mmio.pyc running install_data copying scipy/io/tests/test_mmio.py -> /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy/io/tests/ running install_egg_info Writing /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-packages/scipy-0.7.0.dev3612-py2.5.egg-info
participants (2)
-
David Cournapeau
-
Joshua Lippai