Hi everyone, I'm a bit lost when trying to use the livedocs with the latest cvs build. 1.) The building process seems to ignore my atlas packages and uses only lapack. This is the error I get: /scratch/hlubek/cvs/scipy/scipy_core/scipy_distutils/ system_info.py:653: UserWarning: ********************************************************************* Could not find lapack library within the ATLAS installation. ********************************************************************* warnings.warn(message) /scratch/hlubek/cvs/scipy/scipy_core/scipy_distutils/ system_info.py:865: FutureWarning: hex()/oct() of negative int will return a signed string in Python 2.4 and up magic = hex(hash(`config`)) I'm using debian sarge with the atlas2-sse2 packages but atlas3-sse2 is also installed due to some python-2.3 dependencies. The output of system_info.py can be found below. 2.) When using the livedocs I don't get all of the help files. I.e. scipy.xplt.histogram is displaying an empty help string in the livedocs, although running
??scipy.xplt.histogram from ipython clearly shows that it is available. scipy.xplt.legend isn't even available in the livedocs, as are many other methods and all of the source files.
Could these two issues be related? Or has anyone another idea what I am doing wrong? Thanks for your help, Nikolai _pkg_config_info: NOT AVAILABLE agg2_info: ( src_dirs = .:/usr/local/src ) NOT AVAILABLE atlas_blas_info: ( library_dirs = /usr/local/lib:/usr/lib ) ( paths: /usr/lib/atlas,/usr/lib/sse2 ) ( paths: /usr/lib/sse2/libf77blas.so ) ( paths: /usr/lib/sse2/libcblas.so ) ( paths: /usr/lib/sse2/libatlas.so ) ( include_dirs = /usr/local/include:/usr/include ) ( paths: /usr/include/atlas_misc.h,/usr/include/atlas_enum.h,/usr/ include/atlas_aux.h,/usr/include/atlas_type.h ) ( library_dirs = /usr/local/lib:/usr/lib ) ( paths: /usr/lib/atlas,/usr/lib/sse2 ) FOUND: libraries = ['f77blas', 'cblas', 'atlas'] library_dirs = ['/usr/lib/sse2'] language = c atlas_blas_threads_info: Setting PTATLAS=ATLAS ( library_dirs = /usr/local/lib:/usr/lib ) ( paths: /usr/lib/atlas,/usr/lib/sse2 ) ( paths: /usr/lib/sse2/libatlas.so ) ( paths: /usr/lib/sse2/libatlas.a ) NOT AVAILABLE atlas_info: ( library_dirs = /usr/local/lib:/usr/lib ) ( paths: /usr/lib/atlas,/usr/lib/sse2 ) ( paths: /usr/lib/sse2/libf77blas.so ) ( paths: /usr/lib/sse2/libcblas.so ) ( paths: /usr/lib/sse2/libatlas.so ) ( paths: /usr/lib/sse2/liblapack_atlas.so ) system_info.atlas_info ( include_dirs = /usr/local/include:/usr/include ) ( paths: /usr/include/atlas_misc.h,/usr/include/atlas_enum.h,/usr/ include/atlas_aux.h,/usr/include/atlas_type.h ) ( library_dirs = /usr/local/lib:/usr/lib ) ( paths: /usr/lib/atlas,/usr/lib/sse2 ) FOUND: libraries = ['f77blas', 'cblas', 'atlas'] library_dirs = ['/usr/lib/sse2'] language = c define_macros = [('ATLAS_WITHOUT_LAPACK', None)] atlas_threads_info: Setting PTATLAS=ATLAS ( library_dirs = /usr/local/lib:/usr/lib ) ( paths: /usr/lib/atlas,/usr/lib/sse2 ) ( paths: /usr/lib/sse2/libatlas.so ) ( paths: /usr/lib/sse2/libatlas.a ) ( paths: /usr/lib/sse2/liblapack_atlas.so ) system_info.atlas_threads_info NOT AVAILABLE blas_info: ( library_dirs = /usr/local/lib:/usr/lib ) NOT AVAILABLE blas_opt_info: running build_src building extension "atlas_version" sources creating build creating build/src adding 'build/src/atlas_version_0xaa8955e5.c' to sources. running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext building 'atlas_version' extension compiling C sources gcc options: '-pthread -fno-strict-aliasing -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -fPIC' creating build/temp.linux-i686-2.3 creating build/temp.linux-i686-2.3/build creating build/temp.linux-i686-2.3/build/src compile options: '-I/usr/include/python2.3 -c' gcc: build/src/atlas_version_0xaa8955e5.c gcc -pthread -shared build/temp.linux-i686-2.3/build/src/ atlas_version_0xaa8955e5.o -L/usr/lib/sse2 -lf77blas -lcblas -latlas -o build/temp.linux-i686-2.3/atlas_version.so Command: /usr/bin/python -c "import imp;imp.load_dynamic (\"atlas_version\",\"atlas_version.so\")" Status: 1 Output: Traceback (most recent call last): File "<string>", line 1, in ? ImportError: /usr/lib/sse2/libf77blas.so.2: undefined symbol: e_wsfe ( library_dirs = /usr/local/lib:/usr/lib ) FOUND: libraries = ['f77blas', 'cblas', 'atlas'] library_dirs = ['/usr/lib/sse2'] language = c define_macros = [('NO_ATLAS_INFO', 2)] blas_src_info: ( src_dirs = .:/usr/local/src ) NOT AVAILABLE boost_python_info: ( src_dirs = .:/usr/local/src ) NOT AVAILABLE dfftw_info: ( library_dirs = /usr/local/lib:/usr/lib ) ( include_dirs = /usr/local/include:/usr/include ) NOT AVAILABLE dfftw_threads_info: ( library_dirs = /usr/local/lib:/usr/lib ) ( include_dirs = /usr/local/include:/usr/include ) NOT AVAILABLE djbfft_info: ( library_dirs = /usr/local/lib:/usr/lib ) ( include_dirs = /usr/local/include:/usr/include ) NOT AVAILABLE fftw_info: ( library_dirs = /usr/local/lib:/usr/lib ) ( include_dirs = /usr/local/include:/usr/include ) ( paths: /usr/lib/librfftw.so ) ( paths: /usr/lib/libfftw.so ) ( paths: /usr/include/fftw.h,/usr/include/rfftw.h ) ( library_dirs = /usr/local/lib:/usr/lib ) FOUND: libraries = ['rfftw', 'fftw'] library_dirs = ['/usr/lib'] define_macros = [('SCIPY_FFTW_H', None)] include_dirs = ['/usr/include'] fftw_threads_info: ( library_dirs = /usr/local/lib:/usr/lib ) ( include_dirs = /usr/local/include:/usr/include ) ( paths: /usr/lib/librfftw_threads.so ) ( paths: /usr/lib/libfftw_threads.so ) ( paths: /usr/include/fftw_threads.h,/usr/include/rfftw_threads.h ) ( library_dirs = /usr/local/lib:/usr/lib ) FOUND: libraries = ['rfftw_threads', 'fftw_threads'] library_dirs = ['/usr/lib'] define_macros = [('SCIPY_FFTW_THREADS_H', None)] include_dirs = ['/usr/include'] freetype2_info: NOT AVAILABLE gdk_2_info: NOT AVAILABLE gdk_info: NOT AVAILABLE gdk_pixbuf_2_info: NOT AVAILABLE gdk_pixbuf_xlib_2_info: NOT AVAILABLE gdk_x11_2_info: NOT AVAILABLE gtkp_2_info: NOT AVAILABLE gtkp_x11_2_info: NOT AVAILABLE lapack_atlas_info: ( library_dirs = /usr/local/lib:/usr/lib ) ( paths: /usr/lib/atlas,/usr/lib/sse2 ) ( paths: /usr/lib/sse2/liblapack_atlas.so ) ( paths: /usr/lib/sse2/libf77blas.so ) ( paths: /usr/lib/sse2/libcblas.so ) ( paths: /usr/lib/sse2/libatlas.so ) ( paths: /usr/lib/sse2/liblapack_atlas.so ) system_info.lapack_atlas_info ( include_dirs = /usr/local/include:/usr/include ) ( paths: /usr/include/atlas_misc.h,/usr/include/atlas_enum.h,/usr/ include/atlas_aux.h,/usr/include/atlas_type.h ) ( library_dirs = /usr/local/lib:/usr/lib ) ( paths: /usr/lib/atlas,/usr/lib/sse2 ) FOUND: libraries = ['lapack_atlas', 'f77blas', 'cblas', 'atlas'] library_dirs = ['/usr/lib/sse2'] language = c define_macros = [('ATLAS_WITH_LAPACK_ATLAS', None)] lapack_atlas_threads_info: Setting PTATLAS=ATLAS ( library_dirs = /usr/local/lib:/usr/lib ) ( paths: /usr/lib/atlas,/usr/lib/sse2 ) ( paths: /usr/lib/sse2/liblapack_atlas.so ) ( paths: /usr/lib/sse2/libatlas.so ) ( paths: /usr/lib/sse2/liblapack_atlas.a ) ( paths: /usr/lib/sse2/libatlas.a ) ( paths: /usr/lib/sse2/liblapack_atlas.so ) system_info.lapack_atlas_threads_info NOT AVAILABLE lapack_info: ( library_dirs = /usr/local/lib:/usr/lib ) ( paths: /usr/lib/liblapack.a ) ( library_dirs = /usr/local/lib:/usr/lib ) FOUND: libraries = ['lapack'] library_dirs = ['/usr/lib'] language = f77 lapack_opt_info: running build_src building extension "atlas_version" sources adding 'build/src/atlas_version_0x31b82f3b.c' to sources. running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext Command: /usr/bin/python -c "import imp;imp.load_dynamic (\"atlas_version\",\"atlas_version.so\")" Status: 1 Output: Traceback (most recent call last): File "<string>", line 1, in ? ImportError: /usr/lib/sse2/libf77blas.so.2: undefined symbol: e_wsfe ( library_dirs = /usr/local/lib:/usr/lib ) FOUND: libraries = ['f77blas', 'cblas', 'atlas', 'lapack'] library_dirs = ['/usr/lib/sse2', '/usr/lib'] define_macros = [('ATLAS_WITHOUT_LAPACK', None), ('NO_ATLAS_INFO', 2)] language = f77 lapack_src_info: ( src_dirs = .:/usr/local/src ) NOT AVAILABLE numarray_info: ( include_dirs = /usr/include/python2.3 ) ( paths: /usr/include/python2.3/numarray/arrayobject.h ) ( library_dirs = ) FOUND: define_macros = [('NUMARRAY_VERSION', '"\\"1.1.1\\""')] include_dirs = ['/usr/include/python2.3'] numpy_info: ( include_dirs = /usr/include/python2.3 ) ( paths: /usr/include/python2.3/Numeric/arrayobject.h ) ( library_dirs = ) FOUND: define_macros = [('NUMERIC_VERSION', '"\\"23.7\\""')] include_dirs = ['/usr/include/python2.3'] sfftw_info: ( library_dirs = /usr/local/lib:/usr/lib ) ( include_dirs = /usr/local/include:/usr/include ) NOT AVAILABLE sfftw_threads_info: ( library_dirs = /usr/local/lib:/usr/lib ) ( include_dirs = /usr/local/include:/usr/include ) NOT AVAILABLE wx_info: Could not locate executable wx-config File not found: wx-config. Cannot determine wx info. NOT AVAILABLE x11_info: ( library_dirs = /usr/X11R6/lib:/usr/lib ) ( include_dirs = /usr/X11R6/include:/usr/include ) ( paths: /usr/X11R6/lib/libX11.so ) ( paths: /usr/X11R6/include/X11/X.h ) ( library_dirs = /usr/X11R6/lib:/usr/lib ) FOUND: libraries = ['X11'] library_dirs = ['/usr/X11R6/lib'] include_dirs = ['/usr/X11R6/include'] xft_info: NOT AVAILABLE
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Nikolai Hlubek