Hi again,
I just ran ./runTests.py with the latest git and I noticed one test was failing (tests/test_input_linear_elastic.py). However, when I ran ./runTests.py --debug tests/test_input_linear_elastic.py, the test is passing. It also passes with just ./runTests.py tests/test_input_linear_elastic.py. Here's the output:
logan@phoenix:~/projects/sfepy$ ./runTests.py <<< directory: tests, test files: 36 tests/test_lcbc_3d.py
/usr/lib/python2.5/site-packages/scipy/linsolve/__init__.py:4: DeprecationWarning: scipy.linsolve has moved to scipy.sparse.linalg.dsolve warn('scipy.linsolve has moved to scipy.sparse.linalg.dsolve', DeprecationWarning) /home/logan/projects/sfepy/sfepy/fem/extmods/geometry.py:174: DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew. return _geometry.VolumeGeometry_variable(self, *args)
/home/logan/projects/sfepy/sfepy/fem/extmods/geometry.py:174: DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr. return _geometry.VolumeGeometry_variable(self, *args)
+++ test_linear_rigid_body_bc: ok
tests/test_functions.py
+++ test_ebc_functions: ok
+++ test_material_functions: ok
+++ test_region_functions: ok
tests/test_assembling.py
+++ test_dq_de: ok
+++ test_surface_evaluate: ok
+++ test_vector_matrix: ok
tests/test_input_kostka.py
+++ test_input: ok
tests/test_periodic_bc_3d.py
+++ test_pbc: ok
tests/test_input_stabilized_navier_stokes.py
+++ test_input: ok
tests/test_msm_laplace.py
+++ test_msm_laplace: ok
tests/test_input_acoustics.py
+++ test_input: ok
tests/test_input_sinbc.py
+++ test_input: ok
tests/test_elasticity_small_strain.py
+++ test_get_solution: ok
+++ test_linear_terms: ok
tests/test_periodic_bc_2d.py
+++ test_pbc: ok
tests/test_meshio.py
nodes: 100%|################################################################################################################################################################| Time: 00:00:00 elements: 100% |#############################################################################################################################################################| Time: 00:00:01 +++ test_read_meshes: ok
+++ test_compare_same_meshes: ok
+++ test_read_dimension: ok
tests/test_input_piezo.py
+++ test_ebc: ok
+++ test_input: ok
tests/test_input_le.py
+++ test_input: ok
tests/test_quadratures.py
+++ test_problem_creation: ok
tests/test_input_biot.py
+++ test_input: ok
tests/test_parsing.py
+++ test_parse_equations: ok
+++ test_parse_regions: ok
tests/test_input_time_poisson.py
/usr/lib/python2.5/site-packages/scipy/sparse/linalg/dsolve/linsolve.py:147: SparseEfficiencyWarning: splu requires CSC matrix format warn('splu requires CSC matrix format', SparseEfficiencyWarning)
+++ test_input: ok
tests/test_laplace_unit_square.py
+++ test_boundary_fluxes: ok
+++ test_solution: ok
tests/test_input_linear_elastic_dynamic.py
+++ test_input: ok
tests/test_io.py
+++ test_recursive_dict_hdf5: ok
/usr/lib/python2.5/site-packages/scipy/sparse/compressed.py:24: DeprecationWarning: dims= is deprecated, use shape= instead
warn("dims= is deprecated, use shape= instead", DeprecationWarning)
+++ test_sparse_matrix_hdf5: ok
tests/test_input_linear_elastic.py
--- test_input: failed!
tests/test_linear_solvers.py
/usr/lib/python2.5/site-packages/numpy/lib/utils.py:108: DeprecationWarning: scipy.linalg.cg is deprecated, use scipy.sparse.linalg.cg
warnings.warn(str1, DeprecationWarning)
/usr/lib/python2.5/site-packages/numpy/lib/utils.py:108: DeprecationWarning: scipy.linalg.bicgstab is deprecated, use scipy.sparse.linalg.bicgstab
warnings.warn(str1, DeprecationWarning)
/usr/lib/python2.5/site-packages/numpy/lib/utils.py:108: DeprecationWarning: scipy.linalg.qmr is deprecated, use scipy.sparse.linalg.qmr
warnings.warn(str1, DeprecationWarning)
+++ test_solvers: ok
tests/test_input_subdomains.py
+++ test_input: ok
tests/test_input_octahedron.py
nodes: 100%|################################################################################################################################################################| Time: 00:00:00 elements: 100% |#############################################################################################################################################################| Time: 00:00:00 +++ test_input: ok
tests/test_lcbc_2d.py
+++ test_linear_rigid_body_bc: ok
tests/test_base.py
+++ test_struct_add: ok
+++ test_struct_i_add: ok
tests/test_volume.py
+++ test_volume: ok
tests/test_input_biot_npbc.py
/home/logan/projects/sfepy/sfepy/fem/extmods/geometry.py:256: DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew.
return _geometry.SurfaceGeometry_variable(self, *args)
/home/logan/projects/sfepy/sfepy/fem/extmods/geometry.py:256: DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr.
return _geometry.SurfaceGeometry_variable(self, *args)
+++ test_input: ok
tests/test_msm_symbolic.py
/usr/lib/pymodules/python2.5/sympy/matrices/matrices.py:1443: UserWarning: Deprecated: use zeros() instead.
warnings.warn( 'Deprecated: use zeros() instead.' )
+++ test_msm_symbolic_diffusion: ok
+++ test_msm_symbolic_laplace: ok
tests/test_input_navier_stokes.py
+++ test_input: ok
tests/test_input_pfdpm_permeability.py
+++ test_input: ok
tests/test_term_consistency.py
+++ test_consistency_d_dw: ok
tests/test_laplace_unit_disk.py
+++ test_boundary_fluxes: ok
tests/test_input_hyperelastic.py
+++ test_input: ok
tests/test_input_poisson.py
+++ test_input: ok
36 test file(s) executed in 77.16 s, 1 failure(s) of 49 test(s)
logan@phoenix:~/projects/sfepy$ ./runTests.py --debug tests/test_input_linear_elastic.py <<< tests/test_input_linear_elastic.py
sfepy: left over: ['__builtins__', '_filename', '__file__', 'TestInput', 'input_name', '__name__', 'output_name', '__doc__'] sfepy: left over: ['_filename', '__builtins__', '__doc__', '__name__', '__file__']
test instance prepared (1 test(s))
... solving ../input/linear_elastic.py...
sfepy: reading mesh (database/simple.vtk)...
sfepy: ...done in 0.05 s
sfepy: setting up domain edges...
sfepy: ...done in 0.02 s
sfepy: setting up domain faces...
sfepy: ...done in 0.01 s
sfepy: creating regions...
sfepy: Right
sfepy: Omega
sfepy: Left
sfepy: ...done in 0.04 s
sfepy: equation "balance_of_forces":
sfepy: dw_lin_elastic_iso.i1.Omega( solid.lam, solid.mu, v, u ) = 0 sfepy: setting up dof connectivities...
sfepy: ...done in 0.00 s
sfepy: describing geometries... sfepy: ...done in 0.01 s sfepy: using solvers: nls: newton ls: ls sfepy: matrix shape: (900, 900) sfepy: assembling matrix graph... sfepy: ...done in 0.02 s sfepy: matrix structural nonzeros: 31842 (3.93e-02% fill) sfepy: updating materials... sfepy: solid sfepy: ...done in 0.00 s sfepy: updating variables... sfepy: ...done /usr/lib/python2.5/site-packages/scipy/linsolve/__init__.py:4: DeprecationWarning: scipy.linsolve has moved to scipy.sparse.linalg.dsolve warn('scipy.linsolve has moved to scipy.sparse.linalg.dsolve', DeprecationWarning) sfepy: nls: iter: 0, residual: 8.696725e-03 (rel: 1.000000e+00) sfepy: rezidual: 0.01 [s] sfepy: solve: 0.04 [s] sfepy: matrix: 0.01 [s] sfepy: nls: iter: 1, residual: 5.531265e-18 (rel: 6.360170e-16) ... ../input/linear_elastic.py solved +++ test_input: ok
all passed in 1.58 s 1 test file executed in 1.58 s, 0 failure(s) of 1 test(s) logan@phoenix:~/projects/sfepy$ ./runTests.py tests/test_input_linear_elastic.py tests/test_input_linear_elastic.py /usr/lib/python2.5/site-packages/scipy/linsolve/__init__.py:4: DeprecationWarning: scipy.linsolve has moved to scipy.sparse.linalg.dsolve warn('scipy.linsolve has moved to scipy.sparse.linalg.dsolve', DeprecationWarning) +++ test_input: ok 1 test file executed in 1.55 s, 0 failure(s) of 1 test(s)