fed-lin236:/scratch/users/clausen/sfepy/sfepy-2011.2> ./runTests.py -o output-tests/ <<< directory: tests, test files: 57 tests/test_assembling.py /usr/lib/python2.6/dist-packages/scipy/linsolve/__init__.py:4: DeprecationWarning: scipy.linsolve has moved to scipy.sparse.linalg.dsolve warn('scipy.linsolve has moved to scipy.sparse.linalg.dsolve', DeprecationWarning) /usr/lib/python2.6/dist-packages/scipy/sparse/linalg/dsolve/linsolve.py:78: DeprecationWarning: scipy.sparse.linalg.dsolve.umfpack will be removed, install scikits.umfpack instead ' install scikits.umfpack instead', DeprecationWarning ) /scratch/users/clausen/sfepy/sfepy-2011.2/sfepy/fem/extmods/geometry.py:177: DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew. return _geometry.VolumeGeometry_variable(self, *args) /scratch/users/clausen/sfepy/sfepy-2011.2/sfepy/fem/extmods/geometry.py:177: DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr. return _geometry.VolumeGeometry_variable(self, *args) +++ test_dq_de: ok +++ test_eval_matrix: ok +++ test_save_ebc: ok +++ test_surface_evaluate: ok +++ test_vector_matrix: ok tests/test_base.py +++ test_struct_add: ok +++ test_struct_i_add: ok tests/test_domain.py +++ test_facets: ok /usr/lib/python2.6/dist-packages/numpy/lib/arraysetops.py:135: UserWarning: The order of the output arguments for `return_index` has changed. Before, the output was (indices, unique_arr), but has now been reversed to be more consistent. warnings.warn("The order of the output arguments for " +++ test_refine: ok tests/test_elasticity_small_strain.py +++ test_get_solution: ok +++ test_linear_terms: ok tests/test_fem.py +++ test_base_functions_delta: ok +++ test_base_functions_values: ok tests/test_functions.py +++ test_ebc_functions: ok +++ test_material_functions: ok +++ test_region_functions: ok tests/test_high_level.py +++ test_solving: ok +++ test_term_arithmetics: ok +++ test_term_evaluation: ok +++ test_variables: ok tests/test_input_acoustics.py +++ test_input: ok tests/test_input_active_fibres.py +++ test_input: ok tests/test_input_biot.py +++ test_input: ok tests/test_input_biot_npbc.py /scratch/users/clausen/sfepy/sfepy-2011.2/sfepy/fem/extmods/geometry.py:259: DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew. return _geometry.SurfaceGeometry_variable(self, *args) /scratch/users/clausen/sfepy/sfepy-2011.2/sfepy/fem/extmods/geometry.py:259: DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr. return _geometry.SurfaceGeometry_variable(self, *args) +++ test_input: ok tests/test_input_biot_npbc_lagrange.py +++ test_input: ok tests/test_input_cube.py +++ test_input: ok tests/test_input_hyperelastic.py +++ test_input: ok tests/test_input_laplace_time_ebcs.py +++ test_input: ok tests/test_input_linear_elastic.py +++ test_input: ok tests/test_input_linear_elastic_dynamic.py /usr/lib/python2.6/dist-packages/scipy/sparse/linalg/dsolve/linsolve.py:143: DeprecationWarning: scipy.sparse.linalg.dsolve.umfpack will be removed, install scikits.umfpack instead ' install scikits.umfpack instead', DeprecationWarning ) /usr/lib/python2.6/dist-packages/scipy/sparse/linalg/dsolve/linsolve.py:147: SparseEfficiencyWarning: splu requires CSC matrix format warn('splu requires CSC matrix format', SparseEfficiencyWarning) +++ test_input: ok tests/test_input_linear_elastic_mM.py +++ test_input: ok tests/test_input_linear_elastic_tractions.py +++ test_input: ok tests/test_input_linear_elastic_up.py +++ test_input: ok tests/test_input_material_nonlinearity.py +++ test_input: ok tests/test_input_navier_stokes.py +++ test_input: ok tests/test_input_octahedron.py nodes: 100% |############################################################################################################################| Time: 00:00:00 elements: 100% |#########################################################################################################################| Time: 00:00:00 +++ test_input: ok tests/test_input_perfusion_tl.py +++ test_input: ok tests/test_input_piezo.py +++ test_ebc: ok +++ test_input: ok tests/test_input_poisson.py +++ test_input: ok tests/test_input_poisson_functions.py +++ test_input: ok tests/test_input_sinbc.py +++ test_input: ok tests/test_input_stabilized_navier_stokes.py +++ test_input: ok tests/test_input_stokes.py +++ test_input: ok tests/test_input_subdomains.py +++ test_input: ok tests/test_input_time_poisson.py +++ test_input: ok tests/test_io.py +++ test_recursive_dict_hdf5: ok +++ test_sparse_matrix_hdf5: ok tests/test_laplace_unit_disk.py +++ test_boundary_fluxes: ok tests/test_laplace_unit_square.py +++ test_boundary_fluxes: ok +++ test_solution: ok tests/test_lcbc_2d.py +++ test_linear_rigid_body_bc: ok tests/test_lcbc_3d.py +++ test_linear_rigid_body_bc: ok tests/test_linalg.py +++ test_assemble1d: ok +++ test_tensors: ok +++ test_unique_rows: ok tests/test_linear_solvers.py /usr/lib/python2.6/dist-packages/numpy/lib/utils.py:108: DeprecationWarning: scipy.linalg.cg is deprecated, use scipy.sparse.linalg.cg warnings.warn(str1, DeprecationWarning) /usr/lib/python2.6/dist-packages/numpy/lib/utils.py:108: DeprecationWarning: scipy.linalg.bicgstab is deprecated, use scipy.sparse.linalg.bicgstab warnings.warn(str1, DeprecationWarning) /usr/lib/python2.6/dist-packages/numpy/lib/utils.py:108: DeprecationWarning: scipy.linalg.qmr is deprecated, use scipy.sparse.linalg.qmr warnings.warn(str1, DeprecationWarning) +++ test_solvers: ok tests/test_matcoefs.py +++ test_tensors: ok tests/test_mesh_interp.py +++ test_interpolation: ok +++ test_interpolation_two_meshes: ok tests/test_meshio.py nodes: 100% |############################################################################################################################| Time: 00:00:00 elements: 100% |#########################################################################################################################| Time: 00:00:00 +++ test_read_meshes: ok +++ test_compare_same_meshes: ok +++ test_read_dimension: ok +++ test_write_read_meshes: ok tests/test_msm_laplace.py +++ test_msm_laplace: ok tests/test_msm_symbolic.py +++ test_msm_symbolic_diffusion: ok +++ test_msm_symbolic_laplace: ok tests/test_parsing.py +++ test_parse_equations: ok +++ test_parse_regions: ok tests/test_periodic_bc_2d.py +++ test_pbc: ok tests/test_periodic_bc_3d.py +++ test_pbc: ok tests/test_permutations.py +++ test_rcm: ok tests/test_projections.py +++ test_mass_matrix: ok +++ test_projection_tri_quad: ok tests/test_quadratures.py +++ test_quadratures: ok +++ test_weight_consistency: ok tests/test_regions.py +++ test_operators: ok +++ test_selectors: ok tests/test_semismooth_newton.py +++ test_semismooth_newton: ok tests/test_sparse.py +++ test_compose_sparse: ok tests/test_tensors.py +++ test_stress_transform: ok +++ test_tensors: ok +++ test_transform_data: ok tests/test_term_consistency.py +++ test_consistency_d_dw: ok tests/test_units.py +++ test_consistent_sets: ok +++ test_units: ok tests/test_volume.py +++ test_volume: ok 57 test file(s) executed in 62.80 s, 0 failure(s) of 87 test(s)