It seemed liked those dependencies were optional, so it's good to know they are. Is it possible to pull/clone from the master branch in order to update the existing installed SfePy, or does it have to be re-installed using the codebase on the github repo?

Thanks,
Joe

On Fri, Feb 1, 2019 at 12:16 AM Robert Cimrman <cimrman3@ntc.zcu.cz> wrote:
Hi Joseph,

these problems should be fixed in the master branch on github. Could you try
that? Also note, that the failures are due to missing optional dependencies,
and are not important, if you are not going to use related features.

r.

On 2/1/19 5:50 AM, Joe Borrello wrote:
> The following tests fail when I run sfepy-run run_tests.
>
> I'm running Anaconda 3.4.2 with python 3.5.3
>
> /tests/test_input_navier_stokes2d_iga.py
> test_input: failed!
> --- test instance creation failed
> Traceback (most recent call last):
>    File
> "/root/anaconda3/lib/python3.5/site-packages/sfepy/script/run_tests.py",
> line 234, in <module>
>      sys.exit(main())
>    File
> "/root/anaconda3/lib/python3.5/site-packages/sfepy/script/run_tests.py",
> line 223, in main
>      run_tests(stats, dirname, [filename])
>    File
> "/root/anaconda3/lib/python3.5/site-packages/sfepy/script/run_tests.py",
> line 144, in run_tests
>      stats[0] + 1)
>    File
> "/root/anaconda3/lib/python3.5/site-packages/sfepy/script/run_tests.py",
> line 89, in run_test
>      conf = ProblemConf.from_file(conf_name, required, _required + other)
>    File "/root/anaconda3/lib/python3.5/site-packages/sfepy/base/conf.py",
> line 346, in from_file
>      funmod = import_file(filename, package_name=False)
>    File "/root/anaconda3/lib/python3.5/site-packages/sfepy/base/base.py",
> line 179, in import_file
>      mod = __import__(name)
> ImportError: No module named 'test_input_navier_stokes2d_iga'
>
> tests/test_meshio.py
> test_hdf5_meshio: failed!
> --- test instance creation failed
> Traceback (most recent call last):
>    File
> "/root/anaconda3/lib/python3.5/site-packages/sfepy/script/run_tests.py",
> line 234, in <module>
>      sys.exit(main())
>    File
> "/root/anaconda3/lib/python3.5/site-packages/sfepy/script/run_tests.py",
> line 223, in main
>      run_tests(stats, dirname, [filename])
>    File
> "/root/anaconda3/lib/python3.5/site-packages/sfepy/script/run_tests.py",
> line 144, in run_tests
>      stats[0] + 1)
>    File
> "/root/anaconda3/lib/python3.5/site-packages/sfepy/script/run_tests.py",
> line 89, in run_test
>      conf = ProblemConf.from_file(conf_name, required, _required + other)
>    File "/root/anaconda3/lib/python3.5/site-packages/sfepy/base/conf.py",
> line 346, in from_file
>      funmod = import_file(filename, package_name=False)
>    File "/root/anaconda3/lib/python3.5/site-packages/sfepy/base/base.py",
> line 179, in import_file
>      mod = __import__(name)
> ImportError: No module named 'test_meshio'
>
> tests/test_projections.py
> test_projection_iga_fem: failed!
> --- test instance creation failed
> Traceback (most recent call last):
>    File
> "/root/anaconda3/lib/python3.5/site-packages/sfepy/script/run_tests.py",
> line 234, in <module>
>      sys.exit(main())
>    File
> "/root/anaconda3/lib/python3.5/site-packages/sfepy/script/run_tests.py",
> line 223, in main
>      run_tests(stats, dirname, [filename])
>    File
> "/root/anaconda3/lib/python3.5/site-packages/sfepy/script/run_tests.py",
> line 144, in run_tests
>      stats[0] + 1)
>    File
> "/root/anaconda3/lib/python3.5/site-packages/sfepy/script/run_tests.py",
> line 89, in run_test
>      conf = ProblemConf.from_file(conf_name, required, _required + other)
>    File "/root/anaconda3/lib/python3.5/site-packages/sfepy/base/conf.py",
> line 346, in from_file
>      funmod = import_file(filename, package_name=False)
>    File "/root/anaconda3/lib/python3.5/site-packages/sfepy/base/base.py",
> line 179, in import_file
>      mod = __import__(name)
> ImportError: No module named 'test_projections'
>
> tests/test_term_call_modes.py
> test_term_call_modes: failed!
> --- test instance creation failed
> Traceback (most recent call last):
>    File
> "/root/anaconda3/lib/python3.5/site-packages/sfepy/script/run_tests.py",
> line 234, in <module>
>      sys.exit(main())
>    File
> "/root/anaconda3/lib/python3.5/site-packages/sfepy/script/run_tests.py",
> line 223, in main
>      run_tests(stats, dirname, [filename])
>    File
> "/root/anaconda3/lib/python3.5/site-packages/sfepy/script/run_tests.py",
> line 144, in run_tests
>      stats[0] + 1)
>    File
> "/root/anaconda3/lib/python3.5/site-packages/sfepy/script/run_tests.py",
> line 89, in run_test
>      conf = ProblemConf.from_file(conf_name, required, _required + other)
>    File "/root/anaconda3/lib/python3.5/site-packages/sfepy/base/conf.py",
> line 346, in from_file
>      funmod = import_file(filename, package_name=False)
>    File "/root/anaconda3/lib/python3.5/site-packages/sfepy/base/base.py",
> line 179, in import_file
>      mod = __import__(name)
> ImportError: No module named 'test_term_call_modes'
>
>
> _______________________________________________
> SfePy mailing list -- sfepy@python.org
> To unsubscribe send an email to sfepy-leave@python.org
> https://mail.python.org/mailman3/lists/sfepy.python.org/
>
_______________________________________________
SfePy mailing list -- sfepy@python.org
To unsubscribe send an email to sfepy-leave@python.org
https://mail.python.org/mailman3/lists/sfepy.python.org/
--
Joseph Borrello, B.E.
josephborrello.com

PhD Candidate
Icahn School of Medicine

Prototyping Fellow
Sinai BioDesign
sinaibio.design

Founder
Proto-Sauce
proto-sauce.com

Magnitude and Direction