Hi Serge-Étienne,
how did you compiled sfepy? We have recently fixed the documentation [1] w.r.t. the testing - you need to compile for the in-place build to run the tests in the sfepy directory.
r. [1] http://sfepy.org/doc-devel/installation.html#testing
On 11/12/2014 08:04 PM, Serge-Étienne Parent wrote:
Hi,
I tried to install SfePy on my openSUSE 13.2 64bit machine. I had a hard time installing PyTables, but I could handle this by installing it using /usr/bin/pip2.7 install tables
...after installing python-pip, hdf5-devel, python-devel and python-numpy-devel.
Everything else went smooth and SfePy compiled successfully. But most tests failed and importing in python did not work.
*Importing in Python:*
Python 2.7.8 (default, Sep 30 2014, 15:34:38) [GCC] on linux2 Type "help", "copyright", "credits" or "license" for more information.
from sfepy.base.base import * Traceback (most recent call last): File "<stdin>", line 1, in <module> ImportError: No module named sfepy.base.base
*Test:*
useraccount@linux:~/Programmes/sfepy> ./run_tests.py <<< directory: tests, test files: 82 tests/test_assembling.py --- test_assemble_matrix: failed! --- test_assemble_matrix_complex: failed! --- test_assemble_vector: failed! --- test_assemble_vector_complex: failed! tests/test_base.py +++ test_resolve_deps: ok +++ test_struct_add: ok +++ test_struct_i_add: ok +++ test_verbose_output: ok tests/test_cmesh.py --- test_cmesh_counts: failed! tests/test_domain.py --- test instance creation failed tests/test_ebcs.py --- test instance creation failed tests/test_elasticity_small_strain.py --- test_get_solution: failed! --- test_linear_terms: failed! tests/test_fem.py --- test instance creation failed tests/test_functions.py --- test instance creation failed tests/test_high_level.py --- test instance creation failed tests/test_homogenization_perfusion.py --- test_solution: failed! tests/test_hyperelastic_tlul.py --- test_solution: failed! tests/test_input_acoustics.py --- test instance creation failed tests/test_input_acoustics3d.py --- test instance creation failed tests/test_input_active_fibres.py --- test instance creation failed tests/test_input_biot.py --- test instance creation failed tests/test_input_biot_npbc.py --- test instance creation failed tests/test_input_biot_npbc_lagrange.py --- test instance creation failed tests/test_input_cube.py --- test instance creation failed tests/test_input_elastic_contact_planes.py --- test instance creation failed tests/test_input_elastic_contact_sphere.py --- test instance creation failed tests/test_input_elastic_shifted_periodic.py --- test instance creation failed tests/test_input_its2D_2.py --- test instance creation failed tests/test_input_laplace_coupling_lcbcs.py --- test instance creation failed tests/test_input_laplace_time_ebcs.py --- test instance creation failed tests/test_input_linear_elastic.py --- test instance creation failed tests/test_input_linear_elastic_damping.py --- test instance creation failed tests/test_input_linear_elastic_mM.py --- test instance creation failed tests/test_input_linear_elastic_probes.py --- test instance creation failed tests/test_input_linear_elastic_tractions.py --- test instance creation failed tests/test_input_linear_elastic_up.py --- test instance creation failed tests/test_input_linear_viscoelastic.py --- test instance creation failed tests/test_input_material_nonlinearity.py --- test instance creation failed tests/test_input_navier_stokes.py --- test instance creation failed tests/test_input_navier_stokes2d.py --- test instance creation failed tests/test_input_perfusion_tl.py --- test instance creation failed tests/test_input_piezo.py --- test instance creation failed tests/test_input_poisson.py --- test instance creation failed tests/test_input_poisson_field_dependent_material.py --- test instance creation failed tests/test_input_poisson_functions.py --- test instance creation failed tests/test_input_poisson_neumann.py --- test instance creation failed tests/test_input_poisson_periodic_boundary_condition.py --- test instance creation failed tests/test_input_prestress_fibres.py --- test instance creation failed tests/test_input_sinbc.py --- test instance creation failed tests/test_input_stabilized_navier_stokes.py --- test instance creation failed tests/test_input_stokes.py --- test instance creation failed tests/test_input_stokes_slip_bc.py --- test instance creation failed tests/test_input_thermo_elasticity.py --- test instance creation failed tests/test_input_thermo_elasticity_ess.py --- test instance creation failed tests/test_input_time_poisson.py --- test instance creation failed tests/test_input_vibro_acoustic3d.py --- test instance creation failed tests/test_io.py +++ test_recursive_dict_hdf5: ok +++ test_sparse_matrix_hdf5: ok tests/test_laplace_unit_disk.py --- test instance creation failed tests/test_laplace_unit_square.py --- test instance creation failed tests/test_lcbc_2d.py --- test_linear_rigid_body_bc: failed! tests/test_lcbc_3d.py --- test_linear_rigid_body_bc: failed! tests/test_lcbcs.py --- test_laplace_shifted_periodic: failed! tests/test_linalg.py --- test_assemble1d: failed! --- test_geometry: failed! --- test_tensors: failed! --- test_unique_rows: failed! tests/test_linear_solvers.py --- test instance creation failed tests/test_linearization.py --- test_linearization: failed! tests/test_matcoefs.py +++ test_conversion_functions: ok +++ test_elastic_constants: ok +++ test_stiffness_tensors: ok tests/test_mesh_generators.py --- test_gen_block_mesh: failed! --- test_gen_cylinder_mesh: failed! --- test_gen_extended_block_mesh: failed! tests/test_mesh_interp.py --- test_interpolation: failed! --- test_interpolation_two_meshes: failed! --- test_invariance: failed! --- test_invariance_qp: failed! tests/test_mesh_smoothing.py --- test_mesh_smoothing: failed! tests/test_meshio.py --- test instance creation failed tests/test_msm_laplace.py --- test instance creation failed tests/test_msm_symbolic.py --- test instance creation failed tests/test_normals.py --- test_normals: failed! tests/test_parsing.py --- test_parse_equations: failed! --- test_parse_regions: failed! tests/test_periodic_bc_2d.py --- test instance creation failed tests/test_periodic_bc_3d.py --- test instance creation failed tests/test_permutations.py --- test_rcm: failed! tests/test_poly_spaces.py --- test instance creation failed tests/test_projections.py --- test instance creation failed tests/test_quadratures.py --- test_quadratures: failed! --- test_weight_consistency: failed! tests/test_regions.py --- test instance creation failed tests/test_semismooth_newton.py --- test_semismooth_newton: failed! tests/test_sparse.py --- test_compose_sparse: failed! tests/test_tensors.py --- test_stress_transform: failed! --- test_tensors: failed! --- test_transform_data: failed! --- test_transform_data4: failed! tests/test_term_call_modes.py --- test instance creation failed tests/test_term_consistency.py --- test instance creation failed tests/test_units.py +++ test_consistent_sets: ok +++ test_units: ok tests/test_volume.py --- test instance creation failed 82 test file(s) executed in 0.46 s, 95 failure(s) of 106 test(s)
*Test debug for test_term_consistency.py:*
useraccount@linux:~/Programmes/sfepy> python run_tests.py --debug tests/test_term_consistency.py <<< directory: tests, test files: 1 <<< tests/test_term_consistency.py sfepy: left over: ['verbose', '__builtins__', '_integrate', 'test_terms', '__doc__', '__name__', 'get_pars', 'TestCommon', 'dim', 'data_dir', 'nm', '__package__', '_filename', '__file__'] --- test instance creation failed Traceback (most recent call last): File "run_tests.py", line 206, in <module> main() File "run_tests.py", line 197, in main run_tests(stats, dirname, [filename]) File "run_tests.py", line 131, in run_tests n_fail, n_total, test_time = run_test(conf_name, options) File "run_tests.py", line 83, in run_test test = conf.funmod.Test.from_conf(conf, options) File "/home/sergeetienne/Programmes/sfepy/tests/test_term_consistency.py", line 94, in from_conf from sfepy.discrete import Problem File "/home/sergeetienne/Programmes/sfepy/sfepy/discrete/__init__.py", line 8, in <module> from variables import Variables, Variable, FieldVariable, create_adof_conns File "/home/sergeetienne/Programmes/sfepy/sfepy/discrete/variables.py", line 12, in <module> import sfepy.linalg as la File "/home/sergeetienne/Programmes/sfepy/sfepy/linalg/__init__.py", line 1, in <module> from extmods.crcm import rcm, permute_in_place ImportError: No module named crcm