The new version of PyTables will be in Lucid Lynx, scheduled for April 2010. A workaround for previous versions is listed here: https://bugs.launchpad.net/ubuntu/+source/pytables/+bug/348983
Thanks - I suspect the ones I have are outdated. I installed from ubuntu repos.On Thu, Mar 18, 2010 at 3:53 AM, Robert Cimrman <cimr...@ntc.zcu.cz> wrote:
Hi!It seems like a pytables/HDF5 version issue. This test works with pytables-2.1.2 and hdf5-1.8.4 - what are your versions?
fails 1/60 tests:
here's the debug output
grassy@work:~/sfepy./runTests.py --debug tests/
<<< directory: tests, test files: 1
sfepy: left over: ['__builtins__', '_filename', '__file__',
'__package__', 'TestInput', 'input_name', '__name__', 'output_name',
--- test instance creation failed
Traceback (most recent call last):
File "./runTests.py", line 225, in <module>
File "./runTests.py", line 216, in main
run_tests(stats, dirname, [filename])
File "./runTests.py", line 148, in run_tests
n_fail, n_total, test_time = run_test( conf_name, options )
File "./runTests.py", line 95, in run_test
test = conf.funmod.Test.from_conf( conf, options )
File "tests/testsBasic.py", line 21, in from_conf
test_conf = ProblemConf.from_file( input_name, required, other )
File "/home/grassy/sfepy/sfepy/base/conf.py", line 239, in from_file
funmod = import_file( filename )
File "/home/grassy/sfepy/sfepy/base/base.py", line 86, in
mod = __import__(name)
File "tests/../examples/homogenization/linear_elastic_mM.py", line
4, in <module>
from sfepy.homogenization.micmac import get_homog_coefs_linear
File "/home/grassy/sfepy/sfepy/homogenization/micmac.py", line 6, in
import tables as pt
File "/usr/lib/python2.6/dist-packages/tables/__init__.py", line 76,
from tables.file import File, openFile, copyFile
File "/usr/lib/python2.6/dist-packages/tables/file.py", line 44, in
from tables import hdf5Extension
ImportError: cannot import name hdf5Extension
perhaps cython related?
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