fails 1/60 tests:
here's the debug output
grassy@work:~/sfepy./runTests.py --debug tests/ test_input_linear_elastic_mM.py <<< directory: tests, test files: 1 <<< tests/test_input_linear_elastic_mM.py sfepy: left over: ['__builtins__', '_filename', '__file__', '__package__', 'TestInput', 'input_name', '__name__', 'output_name', '__doc__'] --- test instance creation failed Traceback (most recent call last): File "./runTests.py", line 225, in <module> main() File "./runTests.py", line 216, in main run_tests(stats, dirname, [filename]) File "./runTests.py", line 148, in run_tests n_fail, n_total, test_time = run_test( conf_name, options ) File "./runTests.py", line 95, in run_test test = conf.funmod.Test.from_conf( conf, options ) File "tests/testsBasic.py", line 21, in from_conf test_conf = ProblemConf.from_file( input_name, required, other ) File "/home/grassy/sfepy/sfepy/base/conf.py", line 239, in from_file funmod = import_file( filename ) File "/home/grassy/sfepy/sfepy/base/base.py", line 86, in import_file mod = __import__(name) File "tests/../examples/homogenization/linear_elastic_mM.py", line 4, in <module> from sfepy.homogenization.micmac import get_homog_coefs_linear File "/home/grassy/sfepy/sfepy/homogenization/micmac.py", line 6, in <module> import tables as pt File "/usr/lib/python2.6/dist-packages/tables/__init__.py", line 76, in <module> from tables.file import File, openFile, copyFile File "/usr/lib/python2.6/dist-packages/tables/file.py", line 44, in <module> from tables import hdf5Extension ImportError: cannot import name hdf5Extension
perhaps cython related?
Hi!
freevryheid wrote:
fails 1/60 tests:
here's the debug output
grassy@work:~/sfepy./runTests.py --debug tests/ test_input_linear_elastic_mM.py <<< directory: tests, test files: 1 <<< tests/test_input_linear_elastic_mM.py sfepy: left over: ['__builtins__', '_filename', '__file__', '__package__', 'TestInput', 'input_name', '__name__', 'output_name', '__doc__'] --- test instance creation failed Traceback (most recent call last): File "./runTests.py", line 225, in <module> main() File "./runTests.py", line 216, in main run_tests(stats, dirname, [filename]) File "./runTests.py", line 148, in run_tests n_fail, n_total, test_time = run_test( conf_name, options ) File "./runTests.py", line 95, in run_test test = conf.funmod.Test.from_conf( conf, options ) File "tests/testsBasic.py", line 21, in from_conf test_conf = ProblemConf.from_file( input_name, required, other ) File "/home/grassy/sfepy/sfepy/base/conf.py", line 239, in from_file funmod = import_file( filename ) File "/home/grassy/sfepy/sfepy/base/base.py", line 86, in import_file mod = __import__(name) File "tests/../examples/homogenization/linear_elastic_mM.py", line 4, in <module> from sfepy.homogenization.micmac import get_homog_coefs_linear File "/home/grassy/sfepy/sfepy/homogenization/micmac.py", line 6, in <module> import tables as pt File "/usr/lib/python2.6/dist-packages/tables/__init__.py", line 76, in <module> from tables.file import File, openFile, copyFile File "/usr/lib/python2.6/dist-packages/tables/file.py", line 44, in <module> from tables import hdf5Extension ImportError: cannot import name hdf5Extension
perhaps cython related?
It seems like a pytables/HDF5 version issue. This test works with pytables-2.1.2 and hdf5-1.8.4 - what are your versions?
r.
Thanks - I suspect the ones I have are outdated. I installed from ubuntu repos.
On Thu, Mar 18, 2010 at 3:53 AM, Robert Cimrman <cimr...@ntc.zcu.cz> wrote:
Hi!
freevryheid wrote:
fails 1/60 tests:
here's the debug output
grassy@work:~/sfepy./runTests.py --debug tests/ test_input_linear_elastic_mM.py <<< directory: tests, test files: 1 <<< tests/test_input_linear_elastic_mM.py sfepy: left over: ['__builtins__', '_filename', '__file__', '__package__', 'TestInput', 'input_name', '__name__', 'output_name', '__doc__'] --- test instance creation failed Traceback (most recent call last): File "./runTests.py", line 225, in <module> main() File "./runTests.py", line 216, in main run_tests(stats, dirname, [filename]) File "./runTests.py", line 148, in run_tests n_fail, n_total, test_time = run_test( conf_name, options ) File "./runTests.py", line 95, in run_test test = conf.funmod.Test.from_conf( conf, options ) File "tests/testsBasic.py", line 21, in from_conf test_conf = ProblemConf.from_file( input_name, required, other ) File "/home/grassy/sfepy/sfepy/base/conf.py", line 239, in from_file funmod = import_file( filename ) File "/home/grassy/sfepy/sfepy/base/base.py", line 86, in import_file mod = __import__(name) File "tests/../examples/homogenization/linear_elastic_mM.py", line 4, in <module> from sfepy.homogenization.micmac import get_homog_coefs_linear File "/home/grassy/sfepy/sfepy/homogenization/micmac.py", line 6, in <module> import tables as pt File "/usr/lib/python2.6/dist-packages/tables/__init__.py", line 76, in <module> from tables.file import File, openFile, copyFile File "/usr/lib/python2.6/dist-packages/tables/file.py", line 44, in <module> from tables import hdf5Extension ImportError: cannot import name hdf5Extension
perhaps cython related?
It seems like a pytables/HDF5 version issue. This test works with pytables-2.1.2 and hdf5-1.8.4 - what are your versions?
r.
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The new version of PyTables will be in Lucid Lynx, scheduled for April 2010. A workaround for previous versions is listed here: https://bugs.launchpad.net/ubuntu/+source/pytables/+bug/348983
On Thu, Mar 25, 2010 at 3:51 PM, Andre Smit <freev...@gmail.com> wrote:
Thanks - I suspect the ones I have are outdated. I installed from ubuntu repos.
On Thu, Mar 18, 2010 at 3:53 AM, Robert Cimrman <cimr...@ntc.zcu.cz>wrote:
Hi!
freevryheid wrote:
fails 1/60 tests:
here's the debug output
grassy@work:~/sfepy./runTests.py --debug tests/ test_input_linear_elastic_mM.py <<< directory: tests, test files: 1 <<< tests/test_input_linear_elastic_mM.py sfepy: left over: ['__builtins__', '_filename', '__file__', '__package__', 'TestInput', 'input_name', '__name__', 'output_name', '__doc__'] --- test instance creation failed Traceback (most recent call last): File "./runTests.py", line 225, in <module> main() File "./runTests.py", line 216, in main run_tests(stats, dirname, [filename]) File "./runTests.py", line 148, in run_tests n_fail, n_total, test_time = run_test( conf_name, options ) File "./runTests.py", line 95, in run_test test = conf.funmod.Test.from_conf( conf, options ) File "tests/testsBasic.py", line 21, in from_conf test_conf = ProblemConf.from_file( input_name, required, other ) File "/home/grassy/sfepy/sfepy/base/conf.py", line 239, in from_file funmod = import_file( filename ) File "/home/grassy/sfepy/sfepy/base/base.py", line 86, in import_file mod = __import__(name) File "tests/../examples/homogenization/linear_elastic_mM.py", line 4, in <module> from sfepy.homogenization.micmac import get_homog_coefs_linear File "/home/grassy/sfepy/sfepy/homogenization/micmac.py", line 6, in <module> import tables as pt File "/usr/lib/python2.6/dist-packages/tables/__init__.py", line 76, in <module> from tables.file import File, openFile, copyFile File "/usr/lib/python2.6/dist-packages/tables/file.py", line 44, in <module> from tables import hdf5Extension ImportError: cannot import name hdf5Extension
perhaps cython related?
It seems like a pytables/HDF5 version issue. This test works with pytables-2.1.2 and hdf5-1.8.4 - what are your versions?
r.
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By workaround you mean installing the new pytables manually? Anyway, April is near :)
r.
On 03/29/10 19:44, Andre Smit wrote:
The new version of PyTables will be in Lucid Lynx, scheduled for April 2010. A workaround for previous versions is listed here: https://bugs.launchpad.net/ubuntu/+source/pytables/+bug/348983
On Thu, Mar 25, 2010 at 3:51 PM, Andre Smit<freev...@gmail.com> wrote:
Thanks - I suspect the ones I have are outdated. I installed from ubuntu repos.
On Thu, Mar 18, 2010 at 3:53 AM, Robert Cimrman<cimr...@ntc.zcu.cz>wrote:
Hi!
freevryheid wrote:
fails 1/60 tests:
here's the debug output
grassy@work:~/sfepy./runTests.py --debug tests/ test_input_linear_elastic_mM.py <<< directory: tests, test files: 1 <<< tests/test_input_linear_elastic_mM.py sfepy: left over: ['__builtins__', '_filename', '__file__', '__package__', 'TestInput', 'input_name', '__name__', 'output_name', '__doc__'] --- test instance creation failed Traceback (most recent call last): File "./runTests.py", line 225, in<module> main() File "./runTests.py", line 216, in main run_tests(stats, dirname, [filename]) File "./runTests.py", line 148, in run_tests n_fail, n_total, test_time = run_test( conf_name, options ) File "./runTests.py", line 95, in run_test test = conf.funmod.Test.from_conf( conf, options ) File "tests/testsBasic.py", line 21, in from_conf test_conf = ProblemConf.from_file( input_name, required, other ) File "/home/grassy/sfepy/sfepy/base/conf.py", line 239, in from_file funmod = import_file( filename ) File "/home/grassy/sfepy/sfepy/base/base.py", line 86, in import_file mod = __import__(name) File "tests/../examples/homogenization/linear_elastic_mM.py", line 4, in<module> from sfepy.homogenization.micmac import get_homog_coefs_linear File "/home/grassy/sfepy/sfepy/homogenization/micmac.py", line 6, in <module> import tables as pt File "/usr/lib/python2.6/dist-packages/tables/__init__.py", line 76, in<module> from tables.file import File, openFile, copyFile File "/usr/lib/python2.6/dist-packages/tables/file.py", line 44, in <module> from tables import hdf5Extension ImportError: cannot import name hdf5Extension
perhaps cython related?
It seems like a pytables/HDF5 version issue. This test works with pytables-2.1.2 and hdf5-1.8.4 - what are your versions?
r.
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Just an update - all tests passed on the new ubuntu lucid using the instructions on the Installation page. It wasn't necessary to install umfpack scikits.
On 04/02/10 05:35, freevryheid wrote:
Just an update - all tests passed on the new ubuntu lucid using the instructions on the Installation page. It wasn't necessary to install umfpack scikits.
Fine! Do not the tests run too slowly without umfpack?
thanks for the info, r.
participants (3)
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Andre Smit -
freevryheid
-
Robert Cimrman