run_test.py script generates PETSc Error / mac Os Big Sur Apple M1
I follow the manual to install sfepy in a conda environment.
The tests I made (python ./run_tests.py) are ok except this error which does exist for several test files : [1] ../tests/test_eigenvalue_solvers.py PETSc Error --- Open MPI library version Open MPI v4.1.0, package: Open MPI runner@Mac-1610582404968.local Distribution, ident: 4.1.0, repo rev: v4.1.0, Dec 18, 2020 does not match what PETSc was compiled with 4.0, aborting --- test_eigenvalue_solvers: failed!
An idea ?
Many thanks.
Hi,
On 16. 01. 21 18:09, gnvien@gmail.com wrote:
I follow the manual to install sfepy in a conda environment.
The tests I made (python ./run_tests.py) are ok except this error which does exist for several test files : [1] ../tests/test_eigenvalue_solvers.py PETSc Error --- Open MPI library version Open MPI v4.1.0, package: Open MPI runner@Mac-1610582404968.local Distribution, ident: 4.1.0, repo rev: v4.1.0, Dec 18, 2020 does not match what PETSc was compiled with 4.0, aborting --- test_eigenvalue_solvers: failed!
An idea ?
Can you try downgrading openmpi to 4.0.*?
r.
Hi,
Many thanks,
I will try but because I installed all the package with conda install, I have to find how to downgrade the package (it is probably mpi4py package).
If I run the test program via anaconda/spyder for the same environment, it seems that it works without error !?
Thanks,
Gilles
Hi,
did you resolve your problem?
You can use conda install <pkg>=<version> to install a specific package version.
r.
On 1/17/21 1:44 PM, gnvien@gmail.com wrote:
Hi,
Many thanks,
I will try but because I installed all the package with conda install, I have to find how to downgrade the package (it is probably mpi4py package).
If I run the test program via anaconda/spyder for the same environment, it seems that it works without error !?
Thanks,
Gilles
SfePy mailing list -- sfepy@python.org To unsubscribe send an email to sfepy-leave@python.org https://mail.python.org/mailman3/lists/sfepy.python.org/ Member address: cimrman3@ntc.zcu.cz
Hi,
Sorry for the late answer.
I installed openmpi 4.0.5 package and now it solves the mpi issue.
All test are ok now except test_input_ballon.py :
warp violation -8.131380e-01 at (iel: 9, iqp: 0)! warp violation -8.131380e-01 at (iel: 9, iqp: 1)! warp violation -8.131380e-01 at (iel: 9, iqp: 2)! warp violation -8.131380e-01 at (iel: 9, iqp: 3)! warp violation -5.266340e-01 at (iel: 330, iqp: 0)! warp violation -5.266340e-01 at (iel: 330, iqp: 1)! warp violation -5.266340e-01 at (iel: 330, iqp: 2)! warp violation -5.266340e-01 at (iel: 330, iqp: 3)! warp violation -4.581797e-01 at (iel: 11, iqp: 0)! warp violation -4.581797e-01 at (iel: 11, iqp: 1)! warp violation -4.581797e-01 at (iel: 11, iqp: 2)! warp violation -4.581797e-01 at (iel: 11, iqp: 3)! warp violation -8.029812e-02 at (iel: 104, iqp: 0)! warp violation -8.029812e-02 at (iel: 104, iqp: 1)! warp violation -8.029812e-02 at (iel: 104, iqp: 2)! warp violation -8.029812e-02 at (iel: 104, iqp: 3)! warp violation -2.155647e+00 at (iel: 196, iqp: 0)! warp violation -2.155647e+00 at (iel: 196, iqp: 1)! warp violation -2.155647e+00 at (iel: 196, iqp: 2)! warp violation -2.155647e+00 at (iel: 196, iqp: 3)! warp violation -1.038675e+00 at (iel: 196, iqp: 0)! warp violation -1.038675e+00 at (iel: 196, iqp: 1)! warp violation -1.038675e+00 at (iel: 196, iqp: 2)! warp violation -1.038675e+00 at (iel: 196, iqp: 3)!
Many thanks,
OK, thanks! (The messages are just warnings from C, that are not filtered out.)
On 26. 01. 21 16:06, gnvien@gmail.com wrote:
Hi,
Sorry for the late answer.
I installed openmpi 4.0.5 package and now it solves the mpi issue.
All test are ok now except test_input_ballon.py :
warp violation -8.131380e-01 at (iel: 9, iqp: 0)! warp violation -8.131380e-01 at (iel: 9, iqp: 1)! warp violation -8.131380e-01 at (iel: 9, iqp: 2)! warp violation -8.131380e-01 at (iel: 9, iqp: 3)! warp violation -5.266340e-01 at (iel: 330, iqp: 0)! warp violation -5.266340e-01 at (iel: 330, iqp: 1)! warp violation -5.266340e-01 at (iel: 330, iqp: 2)! warp violation -5.266340e-01 at (iel: 330, iqp: 3)! warp violation -4.581797e-01 at (iel: 11, iqp: 0)! warp violation -4.581797e-01 at (iel: 11, iqp: 1)! warp violation -4.581797e-01 at (iel: 11, iqp: 2)! warp violation -4.581797e-01 at (iel: 11, iqp: 3)! warp violation -8.029812e-02 at (iel: 104, iqp: 0)! warp violation -8.029812e-02 at (iel: 104, iqp: 1)! warp violation -8.029812e-02 at (iel: 104, iqp: 2)! warp violation -8.029812e-02 at (iel: 104, iqp: 3)! warp violation -2.155647e+00 at (iel: 196, iqp: 0)! warp violation -2.155647e+00 at (iel: 196, iqp: 1)! warp violation -2.155647e+00 at (iel: 196, iqp: 2)! warp violation -2.155647e+00 at (iel: 196, iqp: 3)! warp violation -1.038675e+00 at (iel: 196, iqp: 0)! warp violation -1.038675e+00 at (iel: 196, iqp: 1)! warp violation -1.038675e+00 at (iel: 196, iqp: 2)! warp violation -1.038675e+00 at (iel: 196, iqp: 3)!
Many thanks,
SfePy mailing list -- sfepy@python.org To unsubscribe send an email to sfepy-leave@python.org https://mail.python.org/mailman3/lists/sfepy.python.org/ Member address: cimrman3@ntc.zcu.cz
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