Mailman 3 January 2021 - yt-dev

yt-4: Migration to a new configuration system | action required on your side
by Corentin CADIOU 22 Jan '21

22 Jan '21

Dear all, TLDR; We recently migrated yt's configuration system from the yt-3 format to a new and more flexible format in yt-4 (the toml format, see https://github.com/yt-project/yt/pull/2981). *This requires a manual intervention to perform the migration (see details below).* ------------------------------------------------------------------------ *What does it change for users?* The new configuration system is documented online here: https://yt-project.org/docs/dev/reference/configuration.html. *Performing the migration* The change requires a one-time manual intervention on your side to perform the migration automatically. To perform the migration, simply type in your console yt config migrate This should migrate your old configuration to the new format (stored in ~/.config/yt/yt.toml) and store a backup of your old configuration file in ~/.config/yt/ytrc.bak should any error happen. Please report any issue you may encounter in the migration procedure so that we can fix them before releasing officially yt-4. If you get an error about a missing toml package, you may also have to install the toml package manually| | | conda install -c conda-forge toml # if you are using conda pip install toml # otherwise | Per-folder configuration The new configuration system allows you to configure yt per-folder. In particular, if a file named yt.toml is present in your current working folder, this file will override the global configuration. You can easily configure yt from the command line using yt config set yt log_level 40 --global # this will write in ~/.config/yt/yt.toml # or yt config set yt log_level 40 --local # this will write in ./yt.toml Naming convention We have also rationalized the naming convention of configurable keys in the configuration file: all keys now use snake case (i.e. words separated by an underscore). For example loglevel has become log_level. This is handled automatically by the configuration script, but bear that in mind if you modify the configuration file. For reference, all configurable keys can currently be found online https://github.com/yt-project/yt/blob/main/yt/config.py#L12 and the most important ones are documented online (https://yt-project.org/docs/dev/reference/configuration.html). What does it change for developers? The new format should allow more flexible configuration options. In particular, it supports nested configuration blocks and allows to find the most specific key in the configuration file # yt.toml [fields] cmap = "arbre" [fields.gas] cmap = "viridis" [fields.gas.temperature] cmap = "plasma" In Python, you can then query the "most specific" key matching a given path: from yt.config import ytcfg ytcfg.get_most_specific("fields", "gas", "temperature", "cmap") == "plasma" ytcfg.get_most_specific("fields", "gas", "density", "cmap") == "viridis" ytcfg.get_most_specific("fields", "io", "velocity_x", "cmap") == "arbre" This isn't used anywhere /yet/. The other breaking change compared to the old configuration system is that ytcfg.get returns typed quantities (as read by the toml parser) instead of strings. Best, Corentin -- Dr. Corentin Cadiou Post Doctoral Research Assistant Cosmoparticle Initiative Hub, desk 27 University College London (UCL) Gower St, Bloomsbury, London WC1E 6BT mobile: +33.6.43.18.66.83

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Change default branch name
by Matthew Turk 20 Jan '21

20 Jan '21

Hi folks, In January, Github is making it easier to change the default branch name with a toggle on the website: https://github.com/github/renaming I know lots of other projects have done this (including maestro) and we could do it ourselves, but I'd like to propose that we do this as soon as GH has the tooling in place to handle it for us. If anyone objects we can dig into this during a team meeting or something, but personally this kind of seems uncontroversial and should be easy to implement. -Matt

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Branch name change
by Matthew Turk 20 Jan '21

20 Jan '21

Hi folks, As a quick update, the primary branch for yt-project/yt is now "main", renamed from "master". This should be minimally invasive, but if you run into any troubles, let us know! -Matt

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Auto-fixing linting errors
by Clément Robert 11 Jan '21

11 Jan '21

Dear yt-dev I recently found out about https://pre-commit.ci, and I'd like to propose we adopt this tool as part of our CI for linting/auto-fixing. The idea is that this automatically runs $ pre-commit run --all-files on each pull request and commits to the corresponding branch to auto-fix errors with pre-commit hooks (black, isort and flynt in our case). I'm reaching out to you because this would have small repercusions on everyone's workflow. Let me try to give a comprehensive description of gains and costs in the following. what it gets us a simplification of our CI tooling, namely: - `tests/lint_requirements.txt` - `.github/workflows/style-checks.yaml` - https://github.com/yt-project/slash-command-processor all become useless `.github/PULL_REQUEST_TEMPLATE.yaml` will also be simplified as all linting items in `PR Checklist` become redundant. On top of this, new hooks could be seamlessly added in the future without increasing the entry barrier for occasional contributors (as installing pre-commit hooks locally is and remains an opt-in). what it costs us - "zero" configuration: the only requirement is `.pre-commit.yaml`, which is already part of the repo. - minor updates to .pre-commit-config.yaml, namely : - bumping black's version (reason: black's `--exclude` flag is overidden by pre-commit's `--all-files`, but more recent versions of black have a `--force-exclude` flag that overcomes this) this will require a new PR to adopt black's latest (minor) updates in code styling - signing up tohttps://pre-commit.ci (free) what this changes to your workflow PRs will be automatically fixed by the bot, so you'll either need to occasionally run `git pull` or `git push --force` to account for it. Note that this can be avoided completely by installing pre-commit hooks locally which is and will remain an opt-in, see https://yt-project.org/docs/dev/developing/developing.html#pre-commit-hooks. Let me know what you think. Take care, and happy new year ! Cheers, Clément

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