On Thursday, April 14, 2016, Nathan Goldbaum
On Thursday, April 14, 2016, Britton Smith
javascript:_e(%7B%7D,'cvml','brittonsmith@gmail.com');> wrote: Hi Nathan,
I ran the install_script on two cluster here. Both succeeded. 1. Archer, a cray similar to Blue Waters: Linux eslogin007 3.0.101-0.46-default #1 SMP Wed Dec 17 11:04:10 UTC 2014 (8356111) x86_64 x86_64 x86_64 GNU/Linux 2. Local cluster at the observatory: Linux head 3.2.0-4-amd64 #1 SMP Debian 3.2.68-1+deb7u4 x86_64 GNU/Linux
I ran the test script on my laptop (OS X 10.10.5). It looks like some of the configurations failed. The output of the script is here: http://paste.yt-project.org/show/6420/
Hi Britton,
I honestly wouldn't expect inst_conda=0 to work properly on a Mac. Unfortunately it's very hard to figure out exactly what's going wrong here without being able to locally debug...
Nathan
Oh on second thought I think Andrew Myers ran into this issue. You wouldn't happen to have GCC installed with higher precedence than xcode's clang, would you? I don't think it's possible to build Python on OSX under GCC anymore. Nathan
Britton
On Wed, Apr 13, 2016 at 7:01 PM, Kenza Arraki
wrote: Hi Nathan, I did the same on my local machine (Mac OS X 10.10.5).
$ wget https://bitbucket.org/ngoldbaum/yt/raw/install-script-updates/doc/install_sc... $ bash install_script.sh using default settings edited path to add yt-conda/bin $ conda run python
import yt ds = yt.load('IsolatedGalaxy/galaxy0030/galaxy0030') ds.print_stats()
Looks good!
On Wed, Apr 13, 2016 at 11:45 AM David Collins
wrote: Hi, Nathan--
I did the simplest thing possible on Blue Waters and it seems to work. I haven't tried anything in parallel yet.
module swap PrgEnv-cray PrgEnv-gnu module load hdf5 (both in ~/.modules) got your script with wget % bash install_script.sh
Ran in under 20 min.
Thanks!
d.
On Wed, Apr 13, 2016 at 11:10 AM, Nathan Goldbaum < nathan12343@gmail.com> wrote:
Hi all,
I'd appreciate it if people could try running my updated install script on a variety of platforms. With my changes, the install script sets up a conda environment by default, but the option to create a bootstrapped from-source python environment is still implemented. See PR 2009 for details:
https://bitbucket.org/yt_analysis/yt/pull-requests/2009
You can either grab the raw install_script.sh file from my fork:
$ wget https://bitbucket.org/ngoldbaum/yt/raw/install-script-updates/doc/install_sc...
Or pull from my fork and run the "test_install_script.py" that I've added. The latter will take a while, because it runs the install script six times with a variety of permutations in options.
Thanks for your help!
-Nathan
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