Odd compile, OSX10.6, OMP, x86 vs. i386
Hi, all-- Sam and I tracked down an odd glitch. It started with trying to run the test runner, and I got an error on the "from yt.utilities.answer_testing.api import" (full trace below) For some reason the build of yt/utilities/lib/grid_traversal.pyx was looking for $DEST_DIR/lib64 and not finding it, trying to use /usr/local/lib/libgomp.dylib which, for some reason is built for i386 rather than x86_64. Putting /usr/local/lib/x86_64 in LD_LIBRARY_PATH didn't seem to work, but soft linking /usr/local/lib/x86_64 to $DEST_DIR/lib64 worked. More elegant solutions are welcome, but this worked for me. d. /run>./test_runner.py --quicksuite=True --output-dir=/Users/dccollins/ThisScratch/TestRunnerFiducial Traceback (most recent call last): File "./test_runner.py", line 29, in <module> from yt.utilities.answer_testing.api import \ File "/Users/dccollins/local2/src/yt-hg/yt/utilities/answer_testing/__init__.py", line 26, in <module> import runner File "/Users/dccollins/local2/src/yt-hg/yt/utilities/answer_testing/runner.py", line 26, in <module> import matplotlib File "/Users/dccollins/local2/lib/python2.7/site-packages/matplotlib/__init__.py", line 133, in <module> from matplotlib.rcsetup import (defaultParams, File "/Users/dccollins/local2/lib/python2.7/site-packages/matplotlib/rcsetup.py", line 19, in <module> from matplotlib.colors import is_color_like File "/Users/dccollins/local2/lib/python2.7/site-packages/matplotlib/colors.py", line 52, in <module> import numpy as np File "/Users/dccollins/local2/lib/python2.7/site-packages/numpy/__init__.py", line 137, in <module> import add_newdocs File "/Users/dccollins/local2/lib/python2.7/site-packages/numpy/add_newdocs.py", line 9, in <module> from numpy.lib import add_newdoc File "/Users/dccollins/local2/lib/python2.7/site-packages/numpy/lib/__init__.py", line 4, in <module> from type_check import * File "/Users/dccollins/local2/lib/python2.7/site-packages/numpy/lib/type_check.py", line 8, in <module> import numpy.core.numeric as _nx File "/Users/dccollins/local2/lib/python2.7/site-packages/numpy/core/__init__.py", line 5, in <module> import multiarray ImportError: dlopen(/Users/dccollins/local2/lib/python2.7/site-packages/numpy/core/multiarray.so, 2): no suitable image found. Did find: /Users/dccollins/local2/lib/python2.7/site-packages/numpy/core/multiarray.so: mach-o, but wrong architecture -- Sent from my computer.
Hi Dave, On Thu, Jun 28, 2012 at 6:12 PM, david collins <antpuncher@gmail.com> wrote:
Hi, all--
Sam and I tracked down an odd glitch. It started with trying to run the test runner, and I got an error on the "from yt.utilities.answer_testing.api import" (full trace below) For some reason the build of yt/utilities/lib/grid_traversal.pyx was looking for $DEST_DIR/lib64 and not finding it, trying to use /usr/local/lib/libgomp.dylib which, for some reason is built for i386 rather than x86_64. Putting /usr/local/lib/x86_64 in LD_LIBRARY_PATH didn't seem to work, but soft linking /usr/local/lib/x86_64 to $DEST_DIR/lib64 worked.
This looks like it might be a distutils issue; I don't think we explicitly link against $DEST_DIR/lib64, except through setting environment variables. Were you able to build outside of the install script?
More elegant solutions are welcome, but this worked for me.
d.
/run>./test_runner.py --quicksuite=True --output-dir=/Users/dccollins/ThisScratch/TestRunnerFiducial Traceback (most recent call last): File "./test_runner.py", line 29, in <module> from yt.utilities.answer_testing.api import \ File "/Users/dccollins/local2/src/yt-hg/yt/utilities/answer_testing/__init__.py", line 26, in <module> import runner File "/Users/dccollins/local2/src/yt-hg/yt/utilities/answer_testing/runner.py", line 26, in <module> import matplotlib File "/Users/dccollins/local2/lib/python2.7/site-packages/matplotlib/__init__.py", line 133, in <module> from matplotlib.rcsetup import (defaultParams, File "/Users/dccollins/local2/lib/python2.7/site-packages/matplotlib/rcsetup.py", line 19, in <module> from matplotlib.colors import is_color_like File "/Users/dccollins/local2/lib/python2.7/site-packages/matplotlib/colors.py", line 52, in <module> import numpy as np File "/Users/dccollins/local2/lib/python2.7/site-packages/numpy/__init__.py", line 137, in <module> import add_newdocs File "/Users/dccollins/local2/lib/python2.7/site-packages/numpy/add_newdocs.py", line 9, in <module> from numpy.lib import add_newdoc File "/Users/dccollins/local2/lib/python2.7/site-packages/numpy/lib/__init__.py", line 4, in <module> from type_check import * File "/Users/dccollins/local2/lib/python2.7/site-packages/numpy/lib/type_check.py", line 8, in <module> import numpy.core.numeric as _nx File "/Users/dccollins/local2/lib/python2.7/site-packages/numpy/core/__init__.py", line 5, in <module> import multiarray ImportError: dlopen(/Users/dccollins/local2/lib/python2.7/site-packages/numpy/core/multiarray.so, 2): no suitable image found. Did find: /Users/dccollins/local2/lib/python2.7/site-packages/numpy/core/multiarray.so: mach-o, but wrong architecture
-- Sent from my computer. _______________________________________________ yt-dev mailing list yt-dev@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
This looks like it might be a distutils issue; I don't think we explicitly link against $DEST_DIR/lib64, except through setting environment variables. Were you able to build outside of the install script?
That seems reasonable. The build of everything but yt went fine with the install script, only one last "setup.py build-ext" was necessary after we narrowed down the problem. d.
More elegant solutions are welcome, but this worked for me.
d.
/run>./test_runner.py --quicksuite=True --output-dir=/Users/dccollins/ThisScratch/TestRunnerFiducial Traceback (most recent call last): File "./test_runner.py", line 29, in <module> from yt.utilities.answer_testing.api import \ File "/Users/dccollins/local2/src/yt-hg/yt/utilities/answer_testing/__init__.py", line 26, in <module> import runner File "/Users/dccollins/local2/src/yt-hg/yt/utilities/answer_testing/runner.py", line 26, in <module> import matplotlib File "/Users/dccollins/local2/lib/python2.7/site-packages/matplotlib/__init__.py", line 133, in <module> from matplotlib.rcsetup import (defaultParams, File "/Users/dccollins/local2/lib/python2.7/site-packages/matplotlib/rcsetup.py", line 19, in <module> from matplotlib.colors import is_color_like File "/Users/dccollins/local2/lib/python2.7/site-packages/matplotlib/colors.py", line 52, in <module> import numpy as np File "/Users/dccollins/local2/lib/python2.7/site-packages/numpy/__init__.py", line 137, in <module> import add_newdocs File "/Users/dccollins/local2/lib/python2.7/site-packages/numpy/add_newdocs.py", line 9, in <module> from numpy.lib import add_newdoc File "/Users/dccollins/local2/lib/python2.7/site-packages/numpy/lib/__init__.py", line 4, in <module> from type_check import * File "/Users/dccollins/local2/lib/python2.7/site-packages/numpy/lib/type_check.py", line 8, in <module> import numpy.core.numeric as _nx File "/Users/dccollins/local2/lib/python2.7/site-packages/numpy/core/__init__.py", line 5, in <module> import multiarray ImportError: dlopen(/Users/dccollins/local2/lib/python2.7/site-packages/numpy/core/multiarray.so, 2): no suitable image found. Did find: /Users/dccollins/local2/lib/python2.7/site-packages/numpy/core/multiarray.so: mach-o, but wrong architecture
-- Sent from my computer. _______________________________________________ yt-dev mailing list yt-dev@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
_______________________________________________ yt-dev mailing list yt-dev@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
-- Sent from my computer.
participants (2)
-
david collins -
Matthew Turk