Hi everyone,
I’ve been trying to run Enzo with inline yt lately and have encountered a strange error when using yt-3.0. yt is able to load the pf from Enzo, but doing much more than that results in the error
AttributeError: 'IOHandlerInMemory' object has no attribute '_read_fluid_selection'
(full output and traceback: http://pastebin.com/TY9EVDWd)
After this Enzo resumes running, but yt will always fail in the same way.
This same error arises when doing anything simple like making slices or projections, halo finding, making profiles, etc. Curiously, this doesn’t happen build and run Enzo with either the stable or dev branches of yt, and yt-3.0 works just fine when running on its own, either interactively or from a simple script independent of Enzo. The same behavior occurs both locally running OSX 10.9 and running on a Linux machine. Has anyone encountered this before, or have a clue to point me in the right direction to sort it out?
Thanks, Brian
Hi Brian,
On Fri, Dec 20, 2013 at 4:32 PM, Brian Crosby crosby.bd@gmail.com wrote:
Hi everyone,
I’ve been trying to run Enzo with inline yt lately and have encountered a strange error when using yt-3.0. yt is able to load the pf from Enzo, but doing much more than that results in the error
AttributeError: 'IOHandlerInMemory' object has no attribute '_read_fluid_selection'
(full output and traceback: http://pastebin.com/TY9EVDWd)
After this Enzo resumes running, but yt will always fail in the same way.
This same error arises when doing anything simple like making slices or projections, halo finding, making profiles, etc. Curiously, this doesn’t happen build and run Enzo with either the stable or dev branches of yt, and yt-3.0 works just fine when running on its own, either interactively or from a simple script independent of Enzo. The same behavior occurs both locally running OSX 10.9 and running on a Linux machine. Has anyone encountered this before, or have a clue to point me in the right direction to sort it out?
Ah -- this is a straightforward fix. The IO handler needs to be ported to the 3.0 fluid selection. I can take a shot at this just after the new year, but you might be able to fix it yourself if you follow the model of the other IO handlers in yt/frontends/enzo/io.py , but using the 'enzo' module to get the data rather than h5py.
-Matt
Thanks, Brian
yt-dev mailing list yt-dev@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
Thanks Matt, I’ll give this a shot.
-Brian
On Dec 21, 2013, at 7:42 AM, Matthew Turk matthewturk@gmail.com wrote:
Hi Brian,
On Fri, Dec 20, 2013 at 4:32 PM, Brian Crosby crosby.bd@gmail.com wrote:
Hi everyone,
I’ve been trying to run Enzo with inline yt lately and have encountered a strange error when using yt-3.0. yt is able to load the pf from Enzo, but doing much more than that results in the error
AttributeError: 'IOHandlerInMemory' object has no attribute '_read_fluid_selection'
(full output and traceback: http://pastebin.com/TY9EVDWd)
After this Enzo resumes running, but yt will always fail in the same way.
This same error arises when doing anything simple like making slices or projections, halo finding, making profiles, etc. Curiously, this doesn’t happen build and run Enzo with either the stable or dev branches of yt, and yt-3.0 works just fine when running on its own, either interactively or from a simple script independent of Enzo. The same behavior occurs both locally running OSX 10.9 and running on a Linux machine. Has anyone encountered this before, or have a clue to point me in the right direction to sort it out?
Ah -- this is a straightforward fix. The IO handler needs to be ported to the 3.0 fluid selection. I can take a shot at this just after the new year, but you might be able to fix it yourself if you follow the model of the other IO handlers in yt/frontends/enzo/io.py , but using the 'enzo' module to get the data rather than h5py.
-Matt
Thanks, Brian
yt-dev mailing list yt-dev@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
yt-dev mailing list yt-dev@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
participants (2)
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Brian Crosby -
Matthew Turk