FYI, I updated the install of yt on kraken to be current just now.
/lustre/scratch/proj/yt_common/trunk
_______________________________________________________ sskory@physics.ucsd.edu o__ Stephen Skory http://physics.ucsd.edu/%7Esskory/ _.>/ _Graduate Student ________________________________(_)_\(_)_______________
Thanks very much, Stephen. I think we should start advertising this on the Wiki and in the documentation, along with notes about how to run in parallel on Kraken.
On Thu, Oct 22, 2009 at 10:11 AM, Stephen Skory stephenskory@yahoo.com wrote:
FYI, I updated the install of yt on kraken to be current just now.
/lustre/scratch/proj/yt_common/trunk
_______________________________________________________ sskory@physics.ucsd.edu o__ Stephen Skory http://physics.ucsd.edu/%7Esskory/ _.>/ _Graduate Student ________________________________(_)_(_)_______________
Yt-dev mailing list Yt-dev@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
Thanks, Stephen! I'm definitely going to be using this, in like 10 minutes.
On Thu, Oct 22, 2009 at 11:34 AM, Matthew Turk matthewturk@gmail.comwrote:
Thanks very much, Stephen. I think we should start advertising this on the Wiki and in the documentation, along with notes about how to run in parallel on Kraken.
On Thu, Oct 22, 2009 at 10:11 AM, Stephen Skory stephenskory@yahoo.com wrote:
FYI, I updated the install of yt on kraken to be current just now.
/lustre/scratch/proj/yt_common/trunk
sskory@physics.ucsd.edu o__ Stephen Skory http://physics.ucsd.edu/%7Esskory/ http://physics.ucsd.edu/%7Esskory/_.>/ _Graduate Student ________________________________(_)_(_)_______________
Yt-dev mailing list Yt-dev@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
Yt-dev mailing list Yt-dev@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
Thanks, Stephen! I'm definitely going to be using this, in like 10 minutes.
Let me know if there are any problems. Unf., RTIntegrator and PointsInVolume don't work so I hope you don't need them.
_______________________________________________________ sskory@physics.ucsd.edu o__ Stephen Skory http://physics.ucsd.edu/%7Esskory/ _.>/ _Graduate Student ________________________________(_)_\(_)_______________
I don't need RTIntegrator at the moment, but I am hoping to use it in the future. Matt, are there any prospects of getting that to work on kraken?
Thanks again, Britton
On Thu, Oct 22, 2009 at 12:04 PM, Stephen Skory stephenskory@yahoo.comwrote:
Thanks, Stephen! I'm definitely going to be using this, in like 10
minutes.
Let me know if there are any problems. Unf., RTIntegrator and PointsInVolume don't work so I hope you don't need them.
sskory@physics.ucsd.edu o__ Stephen Skory http://physics.ucsd.edu/%7Esskory/ http://physics.ucsd.edu/%7Esskory/ _.>/ _Graduate Student ________________________________(_)_(_)_______________
Yt-dev mailing list Yt-dev@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
I'm not sure -- Stephen, what's the error message that gets thrown? If it's multiply defined symbols, we can probably get around it.
On Thu, Oct 22, 2009 at 11:13 AM, Britton Smith brittonsmith@gmail.com wrote:
I don't need RTIntegrator at the moment, but I am hoping to use it in the future. Matt, are there any prospects of getting that to work on kraken?
Thanks again, Britton
On Thu, Oct 22, 2009 at 12:04 PM, Stephen Skory stephenskory@yahoo.com wrote:
Thanks, Stephen! I'm definitely going to be using this, in like 10 minutes.
Let me know if there are any problems. Unf., RTIntegrator and PointsInVolume don't work so I hope you don't need them.
_______________________________________________________ sskory@physics.ucsd.edu o__ Stephen Skory http://physics.ucsd.edu/%7Esskory/ _.>/ _Graduate Student ________________________________(_)_(_)_______________
Yt-dev mailing list Yt-dev@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
Yt-dev mailing list Yt-dev@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
I'm not sure -- Stephen, what's the error message that gets thrown? If it's multiply defined symbols, we can probably get around it.
That's it exactly.
_______________________________________________________ sskory@physics.ucsd.edu o__ Stephen Skory http://physics.ucsd.edu/%7Esskory/ _.>/ _Graduate Student ________________________________(_)_\(_)_______________
Which ones? I'm wondering if we should consolidate, or if there is some header file that is multiply included differently or something. I know that mpi4py utilizes an "include" mechanism to have only a single Cython module -- I'd kind of like to avoid that, however.
On Thu, Oct 22, 2009 at 11:34 AM, Stephen Skory stephenskory@yahoo.com wrote:
I'm not sure -- Stephen, what's the error message that gets thrown? If it's multiply defined symbols, we can probably get around it.
That's it exactly.
_______________________________________________________ sskory@physics.ucsd.edu o__ Stephen Skory http://physics.ucsd.edu/%7Esskory/ _.>/ _Graduate Student ________________________________(_)_(_)_______________ _______________________________________________ Yt-dev mailing list Yt-dev@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
Which ones? I'm wondering if we should consolidate, or if there is some header file that is multiply included differently or something. I know that mpi4py utilizes an "include" mechanism to have only a single Cython module -- I'd kind of like to avoid that, however.
Here's the error messages. It looks like I included unrelated error messages as well, the stuff we want is at the top. Now that I look at it more carefully, it looks like symbol sizes are changing and that's why there's a collision.
http://paste.enzotools.org/show/243/
_______________________________________________________ sskory@physics.ucsd.edu o__ Stephen Skory http://physics.ucsd.edu/%7Esskory/ _.>/ _Graduate Student ________________________________(_)_\(_)_______________
Ah, so it's like you said -- the Cython files all define identical symbols. We may have to perform a special compilation for this. I'll email the Cython-users mailing list to see if they have any ideas.
-Matt
On Thu, Oct 22, 2009 at 12:17 PM, Stephen Skory stephenskory@yahoo.com wrote:
Which ones? I'm wondering if we should consolidate, or if there is some header file that is multiply included differently or something. I know that mpi4py utilizes an "include" mechanism to have only a single Cython module -- I'd kind of like to avoid that, however.
Here's the error messages. It looks like I included unrelated error messages as well, the stuff we want is at the top. Now that I look at it more carefully, it looks like symbol sizes are changing and that's why there's a collision.
http://paste.enzotools.org/show/243/
_______________________________________________________ sskory@physics.ucsd.edu o__ Stephen Skory http://physics.ucsd.edu/%7Esskory/ _.>/ _Graduate Student ________________________________(_)_(_)_______________ _______________________________________________ Yt-dev mailing list Yt-dev@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
That's it exactly.
I should say a bit more.
The errors all appear to be from Cython/C API functions being multiply defined, and I'm sure there's a way to deal with it. _______________________________________________________ sskory@physics.ucsd.edu o__ Stephen Skory http://physics.ucsd.edu/%7Esskory/ _.>/ _Graduate Student ________________________________(_)_\(_)_______________
stephen, me too. I was just running it yesterday and some things were failing....
nice work. On Oct 22, 2009, at 11:47 AM, Britton Smith wrote:
Thanks, Stephen! I'm definitely going to be using this, in like 10 minutes.
On Thu, Oct 22, 2009 at 11:34 AM, Matthew Turk matthewturk@gmail.com wrote: Thanks very much, Stephen. I think we should start advertising this on the Wiki and in the documentation, along with notes about how to run in parallel on Kraken.
On Thu, Oct 22, 2009 at 10:11 AM, Stephen Skory <stephenskory@yahoo.com
wrote: FYI, I updated the install of yt on kraken to be current just now.
/lustre/scratch/proj/yt_common/trunk
sskory@physics.ucsd.edu o__ Stephen Skory http://physics.ucsd.edu/%7Esskory/ _.>/ _Graduate Student ________________________________(_)_(_)_______________
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Dr. Eric J. Hallman NSF Astronomy and Astrophysics Postdoctoral Fellow Center for Astrophysics and Space Astronomy University of Colorado at Boulder hallman (at) casa.colorado.edu office: (303) 735-0129 GoogleVoice: (312) 725-4626 http://solo.colorado.edu/%7Ehallman/
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