Hi John, Yes, it is. Thank you for your help. Best Regards, Eve On 08/05/2013 08:29 PM, John ZuHone wrote:
Hi Eve,
Is this just the 2-D K-H test simulation with SMR? If I could run it myself it would make it easier to debug.
Best,
John
On Aug 5, 2013, at 5:28 PM, Eve Lee
wrote: Hi John,
Following is the output from yt instinfo
yt module located at: /home/evejlee/.local/lib/python2.7/site-packages/yt-2.6dev-py2.7-linux-x86_64.egg The supplemental repositories are located at: /pfs/sw/yt-x86_64/src/yt-supplemental
The current version of the code is:
--- f936432ed45d yt ---
Best Regards,
Eve
On 08/05/2013 02:22 PM, John ZuHone wrote:
Hi Eve,
Sorry that you're having trouble!
Just wanted to check real quick before anything else--which version of yt are you using? Also, are you using the stable branch or the development branch? Support for Athena SMR exists in yt versions 2.5.3 and later.
Best,
John
On Aug 5, 2013, at 5:13 PM, Eve Lee
wrote: Hello,
I'm trying to make a slice plot of Athena MPI SMR data using TimeSeriesData, and I find that the code only make slices out of the base level and blanks out deeper level regions.
Following is how I read in the Athena vtk files:
ts = TimeSeriesData.from_filenames('id0/kh*.vtk', parallel=True) my_storage={} for sto,pf in ts.piter(storage=my_storage): slc = SlicePlot(pf, 'z', 'Density') slc.set_zlim('Density', 0.0, 3.0) num = (pf.h.hierarchy_filename).split('.')[1] slc.save('./slice/'+num)
all my vtk files are in id0, ..., idn where n=number of processors I used, and I'm only using 1 more level of refinement.
Thanks in advance!
Best Regards,
Eve
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