I consistently get an error about going up the ghost cells in my volume. The error message is:
RuntimeError: Error: yt attempted to read outside the boundaries of a non-periodic domain along dimension 0.
Region left edge = -3e+18 code_length, Region right edge = 4.5e+18 code_length
Dataset left edge = 0.0 code_length, Dataset right edge = 1.2e+19 code_length
This commonly happens when trying to compute ghost cells up to the domain boundary. Two possible solutions are to load a smaller region that does not border the edge or override the periodicity for this dataset.
My FLASH datasets have x/y/zmin = 0.0 and x/y/zmax 1.2e19 cm.
I seems like yt is trying to read outside my domain, or is bumping up against the guardcells and I have no idea how to prevent it from doing this. I have tried inspecting the code for an obvious solution. A very similar error shows up when I try to make 1D profiles of the entire dataset (dd = ds.all_data()).
is it possible that yt doesn't support volumes where the (0,0,0) coordinate is a corner of the volume? Any easy solution to the above issue?
Thanks,
Mikhail