non-existing path in 'yt/utilities': 'kdtree/fKDpy.so' PNG_LOCATION: png found in: /usr/include, /usr/lib FTYPE_LOCATION: freetype found in: /usr/include, /usr/lib HDF5_LOCATION: hdf5.cfg: /usr/lib/include, /usr/lib/lib non-existing path in 'yt/utilities': '/usr/lib/lib' non-existing path in 'yt/utilities': '/usr/lib/include' running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building py_modules sources building extension "yt.analysis_modules.halo_finding.fof.EnzoFOF" sources building extension "yt.analysis_modules.halo_finding.hop.EnzoHop" sources building extension "yt.frontends.ramses._ramses_reader" sources building extension "yt.utilities.delaunay._delaunay" sources building extension "yt.utilities.spatial.ckdtree" sources building extension "yt.utilities.spatial._distance_wrap" sources building extension "yt.utilities.lib.CICDeposit" sources building extension "yt.utilities.lib.ContourFinding" sources building extension "yt.utilities.lib.DepthFirstOctree" sources building extension "yt.utilities.lib.fortran_reader" sources building extension "yt.utilities.lib.freetype_writer" sources building extension "yt.utilities.lib.geometry_utils" sources building extension "yt.utilities.lib.Interpolators" sources building extension "yt.utilities.lib.marching_cubes" sources building extension "yt.utilities.lib.misc_utilities" sources building extension "yt.utilities.lib.Octree" sources building extension "yt.utilities.lib.png_writer" sources building extension "yt.utilities.lib.PointsInVolume" sources building extension "yt.utilities.lib.QuadTree" sources building extension "yt.utilities.lib.RayIntegrators" sources building extension "yt.utilities.lib.VolumeIntegrator" sources building extension "yt.utilities.lib.grid_traversal" sources building extension "yt.utilities.lib.GridTree" sources building extension "yt.utilities.data_point_utilities" sources building extension "yt.utilities.hdf5_light_reader" sources building extension "yt.utilities.libconfig_wrapper" sources building extension "yt.visualization._MPL" sources building data_files sources build_src: building npy-pkg config files running build_py running build_ext customize UnixCCompiler customize UnixCCompiler using build_ext customize UnixCCompiler customize UnixCCompiler using build_ext building 'yt.utilities.lib.geometry_utils' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' extra options: '-fopenmp' gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/geometry_utils.c In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14, from build/src.linux-x86_64-2.7/yt/utilities/lib/geometry_utils.c:257: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0, from build/src.linux-x86_64-2.7/yt/utilities/lib/geometry_utils.c:258: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ‘_import_umath’ defined but not used [-Wunused-function] gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/geometry_utils.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/geometry_utils.so -fopenmp building 'yt.utilities.lib.Interpolators' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/Interpolators.c In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14, from build/src.linux-x86_64-2.7/yt/utilities/lib/Interpolators.c:257: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0, from build/src.linux-x86_64-2.7/yt/utilities/lib/Interpolators.c:258: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ‘_import_umath’ defined but not used [-Wunused-function] gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/Interpolators.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/Interpolators.so building 'yt.utilities.lib.marching_cubes' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC compile options: '-Iyt/utilities/lib/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: yt/utilities/lib/FixedInterpolator.c yt/utilities/lib/FixedInterpolator.c: In function ‘offset_interpolate’: yt/utilities/lib/FixedInterpolator.c:54:9: warning: unused variable ‘i’ [-Wunused-variable] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from yt/utilities/lib/FixedInterpolator.h:34, from yt/utilities/lib/FixedInterpolator.c:27: yt/utilities/lib/FixedInterpolator.c: At top level: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function] gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c: In function ‘__pyx_pf_2yt_9utilities_3lib_14marching_cubes_march_cubes_grid’: build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c:9718:11: warning: implicit declaration of function ‘offset_fill’ [-Wimplicit-function-declaration] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14, from build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c:257: build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c: At top level: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0, from build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c:258: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ‘_import_umath’ defined but not used [-Wunused-function] build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c:1345:12: warning: ‘__pyx_f_2yt_9utilities_3lib_14marching_cubes_CountTriangles’ defined but not used [-Wunused-function] build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c: In function ‘__pyx_pf_2yt_9utilities_3lib_14marching_cubes_march_cubes_grid.isra.12’: build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c:10237:56: warning: ‘__pyx_v_nskip’ may be used uninitialized in this function [-Wmaybe-uninitialized] gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.o build/temp.linux-x86_64-2.7/yt/utilities/lib/FixedInterpolator.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.so building 'yt.utilities.lib.misc_utilities' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/misc_utilities.c In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14, from build/src.linux-x86_64-2.7/yt/utilities/lib/misc_utilities.c:257: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0, from build/src.linux-x86_64-2.7/yt/utilities/lib/misc_utilities.c:258: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ‘_import_umath’ defined but not used [-Wunused-function] build/src.linux-x86_64-2.7/yt/utilities/lib/misc_utilities.c: In function ‘__pyx_pf_2yt_9utilities_3lib_14misc_utilities_18kdtree_get_choices.isra.13’: build/src.linux-x86_64-2.7/yt/utilities/lib/misc_utilities.c:6445:21: warning: ‘__pyx_v_my_split’ may be used uninitialized in this function [-Wmaybe-uninitialized] gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/misc_utilities.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/misc_utilities.so building 'yt.utilities.lib.Octree' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/Octree.c In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14, from build/src.linux-x86_64-2.7/yt/utilities/lib/Octree.c:257: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0, from build/src.linux-x86_64-2.7/yt/utilities/lib/Octree.c:258: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ‘_import_umath’ defined but not used [-Wunused-function] gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/Octree.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/Octree.so building 'yt.utilities.lib.png_writer' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC compile options: '-DPNG_SETJMP_NOT_SUPPORTED=True -I/usr/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/png_writer.c In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14, from build/src.linux-x86_64-2.7/yt/utilities/lib/png_writer.c:257: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0, from build/src.linux-x86_64-2.7/yt/utilities/lib/png_writer.c:258: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ‘_import_umath’ defined but not used [-Wunused-function] gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/png_writer.o -lm -lpng -o build/lib.linux-x86_64-2.7/yt/utilities/lib/png_writer.so building 'yt.utilities.lib.PointsInVolume' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/PointsInVolume.c In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14, from build/src.linux-x86_64-2.7/yt/utilities/lib/PointsInVolume.c:257: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0, from build/src.linux-x86_64-2.7/yt/utilities/lib/PointsInVolume.c:258: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ‘_import_umath’ defined but not used [-Wunused-function] build/src.linux-x86_64-2.7/yt/utilities/lib/PointsInVolume.c: In function ‘__pyx_pf_2yt_9utilities_3lib_14PointsInVolume_6calculate_fill_grids.isra.14’: build/src.linux-x86_64-2.7/yt/utilities/lib/PointsInVolume.c:3985:30: warning: ‘__pyx_v_total’ may be used uninitialized in this function [-Wmaybe-uninitialized] gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/PointsInVolume.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/PointsInVolume.so building 'yt.utilities.lib.QuadTree' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/QuadTree.c In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14, from build/src.linux-x86_64-2.7/yt/utilities/lib/QuadTree.c:257: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0, from build/src.linux-x86_64-2.7/yt/utilities/lib/QuadTree.c:258: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ‘_import_umath’ defined but not used [-Wunused-function] gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/QuadTree.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/QuadTree.so building 'yt.utilities.lib.RayIntegrators' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/RayIntegrators.c In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14, from build/src.linux-x86_64-2.7/yt/utilities/lib/RayIntegrators.c:257: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0, from build/src.linux-x86_64-2.7/yt/utilities/lib/RayIntegrators.c:258: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ‘_import_umath’ defined but not used [-Wunused-function] gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/RayIntegrators.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/RayIntegrators.so building 'yt.utilities.lib.VolumeIntegrator' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC compile options: '-Iyt/utilities/lib/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: yt/utilities/lib/kdtree.c In file included from /usr/include/python2.7/Python.h:8:0, from yt/utilities/lib/kdtree.h:29, from yt/utilities/lib/kdtree.c:32: /usr/include/python2.7/pyconfig.h:1161:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] In file included from /usr/include/stdio.h:28:0, from yt/utilities/lib/kdtree.c:28: /usr/include/features.h:215:0: note: this is the location of the previous definition yt/utilities/lib/kdtree.c: In function ‘kd_nearest_i’: yt/utilities/lib/kdtree.c:293:9: warning: variable ‘side’ set but not used [-Wunused-but-set-variable] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from yt/utilities/lib/kdtree.h:30, from yt/utilities/lib/kdtree.c:32: yt/utilities/lib/kdtree.c: At top level: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function] gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c: In function ‘__pyx_pf_2yt_9utilities_3lib_16VolumeIntegrator_15PartitionedGrid_8get_isocontour_triangles’: build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c:11778:9: warning: implicit declaration of function ‘offset_fill’ [-Wimplicit-function-declaration] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14, from build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c:257: build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c: At top level: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0, from build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c:258: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ‘_import_umath’ defined but not used [-Wunused-function] build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c:2415:12: warning: ‘__pyx_f_2yt_9utilities_3lib_16VolumeIntegrator_CountTriangles’ defined but not used [-Wunused-function] build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c: In function ‘__pyx_f_2yt_9utilities_3lib_16VolumeIntegrator_15PartitionedGrid_integrate_ray’: build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c:10143:27: warning: ‘__pyx_v_exit_t’ may be used uninitialized in this function [-Wmaybe-uninitialized] build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c: In function ‘__pyx_pw_2yt_9utilities_3lib_16VolumeIntegrator_17AdaptiveRaySource_7integrate_brick’: build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c:26259:17: warning: ‘__pyx_v_dt’ may be used uninitialized in this function [-Wmaybe-uninitialized] build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c:26166:28: note: ‘__pyx_v_dt’ was declared here gcc: yt/utilities/lib/healpix_mk_pix2xy.c gcc: yt/utilities/lib/healpix_pix2ang_nest.c gcc: yt/utilities/lib/FixedInterpolator.c yt/utilities/lib/FixedInterpolator.c: In function ‘offset_interpolate’: yt/utilities/lib/FixedInterpolator.c:54:9: warning: unused variable ‘i’ [-Wunused-variable] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from yt/utilities/lib/FixedInterpolator.h:34, from yt/utilities/lib/FixedInterpolator.c:27: yt/utilities/lib/FixedInterpolator.c: At top level: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function] gcc: yt/utilities/lib/healpix_mk_xy2pix.c gcc: yt/utilities/lib/healpix_pix2vec_nest.c gcc: yt/utilities/lib/healpix_vec2pix_nest.c yt/utilities/lib/healpix_vec2pix_nest.c: In function ‘vec2pix_nest’: yt/utilities/lib/healpix_vec2pix_nest.c:56:30: warning: unused variable ‘pi’ [-Wunused-variable] gcc: yt/utilities/lib/healpix_ang2pix_nest.c gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.o build/temp.linux-x86_64-2.7/yt/utilities/lib/FixedInterpolator.o build/temp.linux-x86_64-2.7/yt/utilities/lib/kdtree.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_xy2pix.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_vec2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_ang2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2ang_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_pix2xy.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2vec_nest.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.so building 'yt.utilities.lib.grid_traversal' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC compile options: '-Iyt/utilities/lib/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' extra options: '-fopenmp' gcc: yt/utilities/lib/kdtree.c In file included from /usr/include/python2.7/Python.h:8:0, from yt/utilities/lib/kdtree.h:29, from yt/utilities/lib/kdtree.c:32: /usr/include/python2.7/pyconfig.h:1161:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] In file included from /usr/include/stdio.h:28:0, from yt/utilities/lib/kdtree.c:28: /usr/include/features.h:215:0: note: this is the location of the previous definition yt/utilities/lib/kdtree.c: In function ‘kd_nearest_i’: yt/utilities/lib/kdtree.c:293:9: warning: variable ‘side’ set but not used [-Wunused-but-set-variable] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from yt/utilities/lib/kdtree.h:30, from yt/utilities/lib/kdtree.c:32: yt/utilities/lib/kdtree.c: At top level: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function] gcc: yt/utilities/lib/healpix_mk_pix2xy.c gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.c build/src.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.c: In function ‘__pyx_f_2yt_9utilities_3lib_14grid_traversal_volume_render_stars_sampler’: build/src.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.c:7893:28: warning: variable ‘__pyx_v_ds’ set but not used [-Wunused-but-set-variable] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14, from build/src.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.c:257: build/src.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.c: At top level: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0, from build/src.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.c:258: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ‘_import_umath’ defined but not used [-Wunused-function] gcc: yt/utilities/lib/FixedInterpolator.c yt/utilities/lib/FixedInterpolator.c: In function ‘offset_interpolate’: yt/utilities/lib/FixedInterpolator.c:54:9: warning: unused variable ‘i’ [-Wunused-variable] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from yt/utilities/lib/FixedInterpolator.h:34, from yt/utilities/lib/FixedInterpolator.c:27: yt/utilities/lib/FixedInterpolator.c: At top level: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function] gcc: yt/utilities/lib/healpix_mk_xy2pix.c gcc: yt/utilities/lib/healpix_pix2vec_nest.c gcc: yt/utilities/lib/healpix_vec2pix_nest.c yt/utilities/lib/healpix_vec2pix_nest.c: In function ‘vec2pix_nest’: yt/utilities/lib/healpix_vec2pix_nest.c:56:30: warning: unused variable ‘pi’ [-Wunused-variable] gcc: yt/utilities/lib/healpix_ang2pix_nest.c gcc: yt/utilities/lib/healpix_pix2ang_nest.c gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.o build/temp.linux-x86_64-2.7/yt/utilities/lib/FixedInterpolator.o build/temp.linux-x86_64-2.7/yt/utilities/lib/kdtree.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_xy2pix.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_vec2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_ang2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2ang_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_pix2xy.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2vec_nest.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.so -fopenmp building 'yt.utilities.lib.GridTree' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/GridTree.c In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14, from build/src.linux-x86_64-2.7/yt/utilities/lib/GridTree.c:257: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ‘_import_array’ defined but not used [-Wunused-function] In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0, from build/src.linux-x86_64-2.7/yt/utilities/lib/GridTree.c:258: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ‘_import_umath’ defined but not used [-Wunused-function] gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/GridTree.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/GridTree.so building 'yt.utilities.data_point_utilities' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: yt/utilities/data_point_utilities.c yt/utilities/data_point_utilities.c: In function ‘DataCubeGeneric’: yt/utilities/data_point_utilities.c:471:17: warning: variable ‘ag_re’ set but not used [-Wunused-but-set-variable] yt/utilities/data_point_utilities.c:309:14: warning: variable ‘ag_cm’ set but not used [-Wunused-but-set-variable] yt/utilities/data_point_utilities.c: In function ‘Py_FillRegion’: yt/utilities/data_point_utilities.c:648:35: warning: unused variable ‘rk’ [-Wunused-variable] yt/utilities/data_point_utilities.c:648:31: warning: unused variable ‘rj’ [-Wunused-variable] yt/utilities/data_point_utilities.c:648:27: warning: unused variable ‘ri’ [-Wunused-variable] yt/utilities/data_point_utilities.c:643:40: warning: unused variable ‘ize’ [-Wunused-variable] yt/utilities/data_point_utilities.c:643:35: warning: unused variable ‘iye’ [-Wunused-variable] yt/utilities/data_point_utilities.c:643:30: warning: unused variable ‘ixe’ [-Wunused-variable] yt/utilities/data_point_utilities.c:643:25: warning: unused variable ‘izs’ [-Wunused-variable] yt/utilities/data_point_utilities.c:643:20: warning: unused variable ‘iys’ [-Wunused-variable] yt/utilities/data_point_utilities.c:643:15: warning: unused variable ‘ixs’ [-Wunused-variable] yt/utilities/data_point_utilities.c: In function ‘Py_FillBuffer’: yt/utilities/data_point_utilities.c:852:29: warning: unused variable ‘rk’ [-Wunused-variable] yt/utilities/data_point_utilities.c:852:25: warning: unused variable ‘rj’ [-Wunused-variable] yt/utilities/data_point_utilities.c:852:21: warning: unused variable ‘ri’ [-Wunused-variable] yt/utilities/data_point_utilities.c:847:40: warning: unused variable ‘ize’ [-Wunused-variable] yt/utilities/data_point_utilities.c:847:35: warning: unused variable ‘iye’ [-Wunused-variable] yt/utilities/data_point_utilities.c:847:30: warning: unused variable ‘ixe’ [-Wunused-variable] yt/utilities/data_point_utilities.c:847:25: warning: unused variable ‘izs’ [-Wunused-variable] yt/utilities/data_point_utilities.c:847:20: warning: unused variable ‘iys’ [-Wunused-variable] yt/utilities/data_point_utilities.c:847:15: warning: unused variable ‘ixs’ [-Wunused-variable] yt/utilities/data_point_utilities.c:844:23: warning: unused variable ‘direction’ [-Wunused-variable] yt/utilities/data_point_utilities.c:844:19: warning: unused variable ‘ll’ [-Wunused-variable] yt/utilities/data_point_utilities.c: At top level: yt/utilities/data_point_utilities.c:587:13: warning: ‘dcNothing’ defined but not used [-Wunused-function] yt/utilities/data_point_utilities.c: In function ‘Py_FillBuffer’: yt/utilities/data_point_utilities.c:1043:25: warning: ‘c_data’ may be used uninitialized in this function [-Wmaybe-uninitialized] yt/utilities/data_point_utilities.c:1038:5: warning: ‘n_fields’ may be used uninitialized in this function [-Wmaybe-uninitialized] yt/utilities/data_point_utilities.c:1042:25: warning: ‘g_data’ may be used uninitialized in this function [-Wmaybe-uninitialized] yt/utilities/data_point_utilities.c:982:16: warning: ‘y_loc’ may be used uninitialized in this function [-Wmaybe-uninitialized] yt/utilities/data_point_utilities.c:982:9: warning: ‘x_loc’ may be used uninitialized in this function [-Wmaybe-uninitialized] yt/utilities/data_point_utilities.c: In function ‘Py_FillRegion’: yt/utilities/data_point_utilities.c:826:7: warning: ‘n_fields’ may be used uninitialized in this function [-Wmaybe-uninitialized] yt/utilities/data_point_utilities.c:793:30: warning: ‘to_call’ may be used uninitialized in this function [-Wmaybe-uninitialized] yt/utilities/data_point_utilities.c: In function ‘Py_CombineGrids’: yt/utilities/data_point_utilities.c:268:9: warning: ‘grid_src_vals’ may be used uninitialized in this function [-Wuninitialized] yt/utilities/data_point_utilities.c:269:9: warning: ‘grid_dst_vals’ may be used uninitialized in this function [-Wuninitialized] yt/utilities/data_point_utilities.c: In function ‘Py_FindContours’: yt/utilities/data_point_utilities.c:1115:38: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/yt/utilities/data_point_utilities.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/data_point_utilities.so building 'yt.utilities.hdf5_light_reader' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC compile options: '-DH5_USE_16_API=True -I/usr/lib/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: yt/utilities/hdf5_light_reader.c yt/utilities/hdf5_light_reader.c: In function ‘Py_ReadHDF5DataSet’: yt/utilities/hdf5_light_reader.c:168:12: warning: variable ‘type_size’ set but not used [-Wunused-but-set-variable] yt/utilities/hdf5_light_reader.c: In function ‘get_array_from_nodename’: yt/utilities/hdf5_light_reader.c:672:12: warning: variable ‘type_size’ set but not used [-Wunused-but-set-variable] yt/utilities/hdf5_light_reader.c: In function ‘Py_ReadListOfDatasets’: yt/utilities/hdf5_light_reader.c:550:7: warning: ‘nodelist’ may be used uninitialized in this function [-Wuninitialized] gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/yt/utilities/hdf5_light_reader.o -L/usr/lib/lib -lm -lhdf5 -o build/lib.linux-x86_64-2.7/yt/utilities/hdf5_light_reader.so building 'yt.utilities.libconfig_wrapper' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC creating build/temp.linux-x86_64-2.7/yt/utilities/_libconfig compile options: '-DHAVE_XLOCALE_H=True -Iyt/utilities/_libconfig/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: yt/utilities/_libconfig/grammar.c grammar.y:50:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes] grammar.y:51:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes] gcc: yt/utilities/_libconfig/libconfig.c yt/utilities/_libconfig/libconfig.c: In function ‘__config_locale_override’: yt/utilities/_libconfig/libconfig.c:100:2: warning: #warning "No way to modify calling thread's locale!" [-Wcpp] yt/utilities/_libconfig/libconfig.c: In function ‘__config_locale_restore’: yt/utilities/_libconfig/libconfig.c:121:2: warning: #warning "No way to modify calling thread's locale!" [-Wcpp] yt/utilities/_libconfig/libconfig.c: In function ‘__config_read’: yt/utilities/_libconfig/libconfig.c:555:19: warning: variable ‘buffer’ set but not used [-Wunused-but-set-variable] gcc: yt/utilities/_libconfig/strbuf.c gcc: yt/utilities/_libconfig/scanner.c gcc: build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c: In function ‘__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_4read_file’: build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c:831:24: warning: assignment discards ‘const’ qualifier from pointer target type [enabled by default] build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c:840:24: warning: assignment discards ‘const’ qualifier from pointer target type [enabled by default] build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c: In function ‘__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_10get_setting’: build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c:1362:23: warning: assignment discards ‘const’ qualifier from pointer target type [enabled by default] gcc: yt/utilities/_libconfig/scanctx.c gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/libconfig.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/grammar.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanctx.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanner.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/strbuf.o -o build/lib.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.so building 'yt.visualization._MPL' extension compiling C sources C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC creating build/temp.linux-x86_64-2.7/yt/visualization compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c' gcc: yt/visualization/_MPL.c yt/visualization/_MPL.c: In function ‘Py_Pixelize’: yt/visualization/_MPL.c:121:7: warning: unused variable ‘ndy’ [-Wunused-variable] yt/visualization/_MPL.c:120:7: warning: unused variable ‘ndx’ [-Wunused-variable] yt/visualization/_MPL.c:119:7: warning: unused variable ‘ny’ [-Wunused-variable] yt/visualization/_MPL.c: In function ‘Py_CPixelize’: yt/visualization/_MPL.c:352:15: warning: unused variable ‘radius’ [-Wunused-variable] yt/visualization/_MPL.c:337:60: warning: unused variable ‘dsp’ [-Wunused-variable] yt/visualization/_MPL.c:337:54: warning: unused variable ‘dzsp’ [-Wunused-variable] yt/visualization/_MPL.c:337:48: warning: unused variable ‘dysp’ [-Wunused-variable] yt/visualization/_MPL.c:337:42: warning: unused variable ‘dxsp’ [-Wunused-variable] yt/visualization/_MPL.c:337:36: warning: unused variable ‘pysp’ [-Wunused-variable] yt/visualization/_MPL.c:337:30: warning: unused variable ‘pxsp’ [-Wunused-variable] yt/visualization/_MPL.c:337:25: warning: unused variable ‘zsp’ [-Wunused-variable] yt/visualization/_MPL.c:337:20: warning: unused variable ‘ysp’ [-Wunused-variable] yt/visualization/_MPL.c:337:15: warning: unused variable ‘xsp’ [-Wunused-variable] gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/yt/visualization/_MPL.o -lm -o build/lib.linux-x86_64-2.7/yt/visualization/_MPL.so running scons running build_scripts creating build/scripts.linux-x86_64-2.7 copying and adjusting scripts/iyt -> build/scripts.linux-x86_64-2.7 copying and adjusting scripts/yt_lodgeit.py -> build/scripts.linux-x86_64-2.7 copying scripts/pyro_queue.py -> build/scripts.linux-x86_64-2.7 changing mode of build/scripts.linux-x86_64-2.7/iyt from 644 to 755 changing mode of build/scripts.linux-x86_64-2.7/yt_lodgeit.py from 644 to 755 changing mode of build/scripts.linux-x86_64-2.7/pyro_queue.py from 644 to 755