Hi Nathan and Ashley, Thank you for your help! The sph-viz branch has been really great so far for my smaller simulations. Here's the output: https://pastebin.com/a70qJbwj The point where it says killed is when the memory spike occurred and the job was auto-killed by the system. -Jared On Sat, Aug 18, 2018 at 11:41 AM Nathan Goldbaum <nathan12343@gmail.com> wrote:
Apologies, I had it backwards, GadgetDataset is for Gadget binary outputs.
Jared this is a separate point, but for a while now it's been possible to load Gadget binary outputs using yt.load(), there's no need anymore to explicitly use GadgetDataset.
On Sat, Aug 18, 2018 at 2:56 PM Nathan Goldbaum <nathan12343@gmail.com> wrote:
Hi Ash,
I think any Gadget HDF5 dataset would work.
Nathan
On Sat, Aug 18, 2018 at 8:33 AM Ashley Kelly <a.j.kelly@durham.ac.uk> wrote:
Hi Jared,
I've been working on the sph-viz branch a lot at the moment. It's exciting to see the branch being used so much already!
I have opened an issue on github for this bug: https://github.com/yt-project/yt/issues/1973
Unfortunately the KDTree and a few features that rely on it can use a lot of memory at the moment. However, in your case, you shouldn't require the KDTree, as Nathan said. I am trying to address your issue but i don't seem to have dataset to hand which works with yt.GadgetDataset, would you be able to show me what yt prints out when you run your failing script?
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