Re: [yt-users] yt install error

I've repackaged the most recent stable (2.5) and development versions (2.6). The both work for me on 12.04 lts (precise pangolin). As an added bonus, I was able to package forthon as well, and so now the fKDpy stuff shoud work too, although I have to admit that I haven't tried it out myself. The tests directory is included in the package, but it's installed into a rather strange location: /usr/share/pyshared/yt/utilities/spatial/tests/ Not sure why it's installed there, or how to make it be installed into a more sensible location. But at any rate it's always going to be installed into something under /usr, where a normal user doesn't have write permission, and so you'll end up having to copy the directory into your user space regardless. I encourage any ubuntu users to try it out and let me know if there are problems. Lastly, I was also able to package up the most recent yt-3.0 branch. I haven't uploaded it to my PPA, though, since most people using yt-3.0 at this point are probably also developing it and won't be using packages. However if there's a desire to have a yt3-devel package available, I'd be happy to upload it. Just let me know. Cheers, Mike On Fri, Mar 15, 2013 at 10:44 AM, Michael Kuhlen wrote:

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While it would be nice to try to figure out what's going wrong in your case, you might also try Mike Kuhlen's PPA which he set up to ease yt installs on ubuntu. To install the PPA, do the following:

$ sudo add-apt-repository ppa:kuhlen $ sudo apt-get update $ sudo apt-get install yt

tried this but this does not give the tests directory to begin with the yt beginner's tutorial I also tried sudo apt-get install yt-devel this fails with the error - module athena.api not found

Man, sorry about that. I thought I had figured out this athena.api problem when I last packaged them up, and I didn't realize the tests directory wasn't included in the package. I'm going to try to get to the bottom of that today. Sounds like you got the manual install to work, but just for completeness I'll reply again when I think the packages work properly.

Mike

On Fri, Mar 15, 2013 at 8:10 AM, Akhil langer wrote:

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Thanks Nathan for the reply.

On Thu, Mar 14, 2013 at 8:19 PM, Nathan Goldbaum wrote:

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Hi Ankhil,

Sorry to hear you're having trouble. I don't understand the error you're seeing and unfortunately can't give you an answer.

It seems the problem happens on line 595 of the install script: http://hg.yt-project.org/yt/src/stable/doc/install_script.sh#cl-595

Can you try installing libpng manually, following what's going on in the install script?

i installed libpng15 manually - but no success.

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It seems the error your seeing is caused by something going wrong inside Autotools. Have you installed all the prerequisites as suggested by the install script? Just in case you haven't, this command should take care of it:

$ sudo apt-get install libssl-dev build-essential libncurses5 libncurses5-dev zip uuid-dev libfreetype6-dev tk-dev

yes, i had already installed these

...

While it would be nice to try to figure out what's going wrong in your case, you might also try Mike Kuhlen's PPA which he set up to ease yt installs on ubuntu. To install the PPA, do the following:

$ sudo add-apt-repository ppa:kuhlen $ sudo apt-get update $ sudo apt-get install yt

tried this but this does not give the tests directory to begin with the

yt beginner's tutorial I also tried sudo apt-get install yt-devel this fails with the error - module athena.api not found

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It's also possible to do a manual install: http://yt-project.org/docs/2.5/advanced/installing.html#manual-installation

The install script more or less just automates that workflow, ensuring that all of the dependencies we like to have around are correctly set up.

Finally, I had to manually install and it is working now.

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-Nathan

On Mar 14, 2013, at 6:01 PM, Akhil langer wrote:

I am getting some errors while trying to install yt on ubuntu. Os info: Linux ubuntu 3.2.0-32-generic-pae #51-Ubuntu SMP Wed Sep 26 21:54:23 UTC 2012 i686 i686 i386 GNU/Linux

I did install the libs on my machine that the install_script.sh suggested. Please find below the install logs.

xray_emissivity.h5: OK hdf5-1.8.9.tar.gz: OK zlib-1.2.3.tar.bz2: OK bzip2-1.0.5.tar.gz: OK libpng-1.5.12.tar.gz: OK freetype-2.4.4.tar.gz: OK sqlite-autoconf-3070500.tar.gz: OK zeromq-2.2.0.tar.gz: OK pyzmq-2.1.11.tar.gz: OK tornado-2.2.tar.gz: OK Python-2.7.3.tgz: OK numpy-1.6.1.tar.gz: OK matplotlib-1.2.0.tar.gz: OK ipython-0.13.1.tar.gz: OK h5py-2.1.0.tar.gz: OK Cython-0.17.1.tar.gz: OK reason-js-20120623.zip: OK Forthon-0.8.10.tar.gz: OK nose-1.2.1.tar.gz: OK python-hglib-0.2.tar.gz: OK sympy-0.7.2.tar.gz: OK rockstar-0.99.6.tar.gz: OK

If compilation produces errors, or a large number of warnings, please read README.COMPILATION.PROBLEMS -- you might be able to adjust the flags in this Makefile to improve matters.

Also in README.COMPILATION.PROBLEMS are some hints that may help if your build produces an executable which is unable to correctly handle so-called 'large files' -- files of size 2GB or more.

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/dev/null 2>&1 mv -f .deps/libpng15_la-png.Tpo .deps/libpng15_la-png.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT

gcc -fPIC -c blocksort.c gcc -fPIC -c huffman.c gcc -fPIC -c crctable.c gcc -fPIC -c randtable.c gcc -fPIC -c compress.c gcc -fPIC -c decompress.c gcc -fPIC -c bzlib.c rm -f libbz2.a ar cq libbz2.a blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o ranlib libbz2.a gcc -fPIC -c bzip2.c gcc -fPIC -fPIC -o bzip2 bzip2.o -L. -lbz2 gcc -fPIC -c bzip2recover.c gcc -fPIC -fPIC -o bzip2recover bzip2recover.o if ( test ! -d /home/alanger/workspace/softwares/yt-i686/bin ) ; then mkdir -p /home/alanger/workspace/softwares/yt-i686/bin ; fi if ( test ! -d /home/alanger/workspace/softwares/yt-i686/lib ) ; then mkdir -p /home/alanger/workspace/softwares/yt-i686/lib ; fi if ( test ! -d /home/alanger/workspace/softwares/yt-i686/man ) ; then mkdir -p /home/alanger/workspace/softwares/yt-i686/man ; fi if ( test ! -d /home/alanger/workspace/softwares/yt-i686/man/man1 ) ; then mkdir -p /home/alanger/workspace/softwares/yt-i686/man/man1 ; fi if ( test ! -d /home/alanger/workspace/softwares/yt-i686/include ) ; then mkdir -p /home/alanger/workspace/softwares/yt-i686/include ; fi cp -f bzip2 /home/alanger/workspace/softwares/yt-i686/bin/bzip2 cp -f bzip2 /home/alanger/workspace/softwares/yt-i686/bin/bunzip2 cp -f bzip2 /home/alanger/workspace/softwares/yt-i686/bin/bzcat cp -f bzip2recover /home/alanger/workspace/softwares/yt-i686/bin/bzip2recover chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzip2 chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bunzip2 chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzcat chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzip2recover cp -f bzip2.1 /home/alanger/workspace/softwares/yt-i686/man/man1 chmod a+r /home/alanger/workspace/softwares/yt-i686/man/man1/bzip2.1 cp -f bzlib.h /home/alanger/workspace/softwares/yt-i686/include chmod a+r /home/alanger/workspace/softwares/yt-i686/include/bzlib.h cp -f libbz2.a /home/alanger/workspace/softwares/yt-i686/lib chmod a+r /home/alanger/workspace/softwares/yt-i686/lib/libbz2.a cp -f bzgrep /home/alanger/workspace/softwares/yt-i686/bin/bzgrep ln -s -f /home/alanger/workspace/softwares/yt-i686/bin/bzgrep /home/alanger/workspace/softwares/yt-i686/bin/bzegrep ln -s -f /home/alanger/workspace/softwares/yt-i686/bin/bzgrep /home/alanger/workspace/softwares/yt-i686/bin/bzfgrep chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzgrep cp -f bzmore /home/alanger/workspace/softwares/yt-i686/bin/bzmore ln -s -f /home/alanger/workspace/softwares/yt-i686/bin/bzmore /home/alanger/workspace/softwares/yt-i686/bin/bzless chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzmore cp -f bzdiff /home/alanger/workspace/softwares/yt-i686/bin/bzdiff ln -s -f /home/alanger/workspace/softwares/yt-i686/bin/bzdiff /home/alanger/workspace/softwares/yt-i686/bin/bzcmp chmod a+x /home/alanger/workspace/softwares/yt-i686/bin/bzdiff cp -f bzgrep.1 bzmore.1 bzdiff.1 /home/alanger/workspace/softwares/yt-i686/man/man1 chmod a+r /home/alanger/workspace/softwares/yt-i686/man/man1/bzgrep.1 chmod a+r /home/alanger/workspace/softwares/yt-i686/man/man1/bzmore.1 chmod a+r /home/alanger/workspace/softwares/yt-i686/man/man1/bzdiff.1 echo ".so man1/bzgrep.1" > /home/alanger/workspace/softwares/yt-i686/man/man1/bzegrep.1 echo ".so man1/bzgrep.1" > /home/alanger/workspace/softwares/yt-i686/man/man1/bzfgrep.1 echo ".so man1/bzmore.1" > /home/alanger/workspace/softwares/yt-i686/man/man1/bzless.1 echo ".so man1/bzdiff.1" > /home/alanger/workspace/softwares/yt-i686/man/man1/bzcmp.1 gcc -shared -Wl,-soname -Wl,libbz2.so.1.0 -o libbz2.so.1.0.4 blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o gcc -fPIC -o bzip2-shared bzip2.c libbz2.so.1.0.4 rm -f libbz2.so.1.0 ln -s libbz2.so.1.0.4 libbz2.so.1.0 `libbz2.so.1.0.4' -> `/home/alanger/workspace/softwares/yt-i686/lib/libbz2.so.1.0.4' Checking for gcc... 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1>&2 gawk -f ./scripts/options.awk out=dfn2.out dfn1.out 1>&2 rm dfn1.out mv dfn2.out pnglibconf.dfn rm -f pnglibconf.out dfn.c dfn?.out test -d scripts || mkdir scripts echo '#include "pnglibconf.dfn"' >dfn.c gcc -E -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG\ -I/home/alanger/workspace/softwares/yt-i686/include -DPNGLIB_LIBNAME='PNG15_0' -DPNGLIB_VERSION='1.5.12' -DSYMBOL_PREFIX='' -DPNG_NO_USE_READ_MACROS -DPNG_BUILDING_SYMBOL_TABLE dfn.c > dfn1.out /bin/sed -n -e 's|^.*PNG_DEFN_MAGIC *-\(.*\)- *PNG_DEFN_END.*$|\1|p'\ dfn1.out >dfn2.out /bin/sed -e 's| *PNG_JOIN *||g' -e 's| *$||' dfn2.out >dfn3.out rm -f dfn.c dfn[12].out mv dfn3.out pnglibconf.out rm -f pnglibconf.h cp pnglibconf.out pnglibconf.h /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-png.lo -MD -MP -MF .deps/libpng15_la-png.Tpo -c -o libpng15_la-png.lo `test -f 'png.c' || echo './'`png.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-png.lo -MD -MP -MF .deps/libpng15_la-png.Tpo -c png.c -fPIC -DPIC -o .libs/libpng15_la-png.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-png.lo -MD -MP -MF .deps/libpng15_la-png.Tpo -c png.c -o libpng15_la-png.o libpng15_la-pngerror.lo -MD -MP -MF .deps/libpng15_la-pngerror.Tpo -c -o libpng15_la-pngerror.lo `test -f 'pngerror.c' || echo './'`pngerror.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngerror.lo -MD -MP -MF .deps/libpng15_la-pngerror.Tpo -c pngerror.c -fPIC -DPIC -o .libs/libpng15_la-pngerror.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngerror.lo -MD -MP -MF .deps/libpng15_la-pngerror.Tpo -c pngerror.c -o libpng15_la-pngerror.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngerror.Tpo .deps/libpng15_la-pngerror.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngget.lo -MD -MP -MF .deps/libpng15_la-pngget.Tpo -c -o libpng15_la-pngget.lo `test -f 'pngget.c' || echo './'`pngget.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngget.lo -MD -MP -MF .deps/libpng15_la-pngget.Tpo -c pngget.c -fPIC -DPIC -o .libs/libpng15_la-pngget.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngget.lo -MD -MP -MF .deps/libpng15_la-pngget.Tpo -c pngget.c -o libpng15_la-pngget.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngget.Tpo .deps/libpng15_la-pngget.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngmem.lo -MD -MP -MF .deps/libpng15_la-pngmem.Tpo -c -o libpng15_la-pngmem.lo `test -f 'pngmem.c' || echo './'`pngmem.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngmem.lo -MD -MP -MF .deps/libpng15_la-pngmem.Tpo -c pngmem.c -fPIC -DPIC -o .libs/libpng15_la-pngmem.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngmem.lo -MD -MP -MF .deps/libpng15_la-pngmem.Tpo -c pngmem.c -o libpng15_la-pngmem.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngmem.Tpo .deps/libpng15_la-pngmem.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngpread.lo -MD -MP -MF .deps/libpng15_la-pngpread.Tpo -c -o libpng15_la-pngpread.lo `test -f 'pngpread.c' || echo './'`pngpread.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngpread.lo -MD -MP -MF .deps/libpng15_la-pngpread.Tpo -c pngpread.c -fPIC -DPIC -o .libs/libpng15_la-pngpread.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngpread.lo -MD -MP -MF .deps/libpng15_la-pngpread.Tpo -c pngpread.c -o libpng15_la-pngpread.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngpread.Tpo .deps/libpng15_la-pngpread.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngread.lo -MD -MP -MF .deps/libpng15_la-pngread.Tpo -c -o libpng15_la-pngread.lo `test -f 'pngread.c' || echo './'`pngread.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngread.lo -MD -MP -MF .deps/libpng15_la-pngread.Tpo -c pngread.c -fPIC -DPIC -o .libs/libpng15_la-pngread.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngread.lo -MD -MP -MF .deps/libpng15_la-pngread.Tpo -c pngread.c -o libpng15_la-pngread.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngread.Tpo .deps/libpng15_la-pngread.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrio.lo -MD -MP -MF .deps/libpng15_la-pngrio.Tpo -c -o libpng15_la-pngrio.lo `test -f 'pngrio.c' || echo './'`pngrio.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrio.lo -MD -MP -MF .deps/libpng15_la-pngrio.Tpo -c pngrio.c -fPIC -DPIC -o .libs/libpng15_la-pngrio.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrio.lo -MD -MP -MF .deps/libpng15_la-pngrio.Tpo -c pngrio.c -o libpng15_la-pngrio.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngrio.Tpo .deps/libpng15_la-pngrio.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrtran.lo -MD -MP -MF .deps/libpng15_la-pngrtran.Tpo -c -o libpng15_la-pngrtran.lo `test -f 'pngrtran.c' || echo './'`pngrtran.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrtran.lo -MD -MP -MF .deps/libpng15_la-pngrtran.Tpo -c pngrtran.c -fPIC -DPIC -o .libs/libpng15_la-pngrtran.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrtran.lo -MD -MP -MF .deps/libpng15_la-pngrtran.Tpo -c pngrtran.c -o libpng15_la-pngrtran.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngrtran.Tpo .deps/libpng15_la-pngrtran.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrutil.lo -MD -MP -MF .deps/libpng15_la-pngrutil.Tpo -c -o libpng15_la-pngrutil.lo `test -f 'pngrutil.c' || echo './'`pngrutil.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrutil.lo -MD -MP -MF .deps/libpng15_la-pngrutil.Tpo -c pngrutil.c -fPIC -DPIC -o .libs/libpng15_la-pngrutil.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngrutil.lo -MD -MP -MF .deps/libpng15_la-pngrutil.Tpo -c pngrutil.c -o libpng15_la-pngrutil.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngrutil.Tpo .deps/libpng15_la-pngrutil.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngset.lo -MD -MP -MF .deps/libpng15_la-pngset.Tpo -c -o libpng15_la-pngset.lo `test -f 'pngset.c' || echo './'`pngset.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngset.lo -MD -MP -MF .deps/libpng15_la-pngset.Tpo -c pngset.c -fPIC -DPIC -o .libs/libpng15_la-pngset.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngset.lo -MD -MP -MF .deps/libpng15_la-pngset.Tpo -c pngset.c -o libpng15_la-pngset.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngset.Tpo .deps/libpng15_la-pngset.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngtrans.lo -MD -MP -MF .deps/libpng15_la-pngtrans.Tpo -c -o libpng15_la-pngtrans.lo `test -f 'pngtrans.c' || echo './'`pngtrans.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngtrans.lo -MD -MP -MF .deps/libpng15_la-pngtrans.Tpo -c pngtrans.c -fPIC -DPIC -o .libs/libpng15_la-pngtrans.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngtrans.lo -MD -MP -MF .deps/libpng15_la-pngtrans.Tpo -c pngtrans.c -o libpng15_la-pngtrans.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngtrans.Tpo .deps/libpng15_la-pngtrans.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwio.lo -MD -MP -MF .deps/libpng15_la-pngwio.Tpo -c -o libpng15_la-pngwio.lo `test -f 'pngwio.c' || echo './'`pngwio.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwio.lo -MD -MP -MF .deps/libpng15_la-pngwio.Tpo -c pngwio.c -fPIC -DPIC -o .libs/libpng15_la-pngwio.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwio.lo -MD -MP -MF .deps/libpng15_la-pngwio.Tpo -c pngwio.c -o libpng15_la-pngwio.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngwio.Tpo .deps/libpng15_la-pngwio.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwrite.lo -MD -MP -MF .deps/libpng15_la-pngwrite.Tpo -c -o libpng15_la-pngwrite.lo `test -f 'pngwrite.c' || echo './'`pngwrite.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwrite.lo -MD -MP -MF .deps/libpng15_la-pngwrite.Tpo -c pngwrite.c -fPIC -DPIC -o .libs/libpng15_la-pngwrite.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwrite.lo -MD -MP -MF .deps/libpng15_la-pngwrite.Tpo -c pngwrite.c -o libpng15_la-pngwrite.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngwrite.Tpo .deps/libpng15_la-pngwrite.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwtran.lo -MD -MP -MF .deps/libpng15_la-pngwtran.Tpo -c -o libpng15_la-pngwtran.lo `test -f 'pngwtran.c' || echo './'`pngwtran.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwtran.lo -MD -MP -MF .deps/libpng15_la-pngwtran.Tpo -c pngwtran.c -fPIC -DPIC -o .libs/libpng15_la-pngwtran.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwtran.lo -MD -MP -MF .deps/libpng15_la-pngwtran.Tpo -c pngwtran.c -o libpng15_la-pngwtran.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngwtran.Tpo .deps/libpng15_la-pngwtran.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwutil.lo -MD -MP -MF .deps/libpng15_la-pngwutil.Tpo -c -o libpng15_la-pngwutil.lo `test -f 'pngwutil.c' || echo './'`pngwutil.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwutil.lo -MD -MP -MF .deps/libpng15_la-pngwutil.Tpo -c pngwutil.c -fPIC -DPIC -o .libs/libpng15_la-pngwutil.o as: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: compile: gcc -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG -I/home/alanger/workspace/softwares/yt-i686/include -I/home/alanger/workspace/softwares/yt-i686/include -MT libpng15_la-pngwutil.lo -MD -MP -MF .deps/libpng15_la-pngwutil.Tpo -c pngwutil.c -o libpng15_la-pngwutil.o >/dev/null 2>&1 mv -f .deps/libpng15_la-pngwutil.Tpo .deps/libpng15_la-pngwutil.Plo rm -f scripts/vers.out dfn.c dfn?.out test -d scripts || mkdir scripts echo '#include "scripts/vers.dfn"' >dfn.c gcc -E -DHAVE_CONFIG_H -I. -DPNG_CONFIGURE_LIBPNG\ -I/home/alanger/workspace/softwares/yt-i686/include -DPNGLIB_LIBNAME='PNG15_0' -DPNGLIB_VERSION='1.5.12' -DSYMBOL_PREFIX='' -DPNG_NO_USE_READ_MACROS -DPNG_BUILDING_SYMBOL_TABLE dfn.c > dfn1.out /bin/sed -n -e 's|^.*PNG_DEFN_MAGIC *-\(.*\)- *PNG_DEFN_END.*$|\1|p'\ dfn1.out >dfn2.out /bin/sed -e 's| *PNG_JOIN *||g' -e 's| *$||' dfn2.out >dfn3.out rm -f dfn.c dfn[12].out mv dfn3.out scripts/vers.out rm -f libpng.vers cp scripts/vers.out libpng.vers /bin/bash ./libtool --tag=CC --mode=link gcc -I/home/alanger/workspace/softwares/yt-i686/include -no-undefined -export-dynamic -version-number 15:12:0 -Wl,--version-script=libpng.vers -L/home/alanger/workspace/softwares/yt-i686/lib/ -L/home/alanger/workspace/softwares/yt-i686/lib64/ -L/home/alanger/workspace/softwares/yt-i686/lib/ -L/home/alanger/workspace/softwares/yt-i686/lib64/ -o libpng15.la-rpath /home/alanger/workspace/softwares/yt-i686/lib libpng15_la-png.lo libpng15_la-pngerror.lo libpng15_la-pngget.lo libpng15_la-pngmem.lo libpng15_la-pngpread.lo libpng15_la-pngread.lo libpng15_la-pngrio.lo libpng15_la-pngrtran.lo libpng15_la-pngrutil.lo libpng15_la-pngset.lo libpng15_la-pngtrans.lo libpng15_la-pngwio.lo libpng15_la-pngwrite.lo libpng15_la-pngwtran.lo libpng15_la-pngwutil.lo -lm -lz -lm libtool: link: gcc -shared -fPIC -DPIC .libs/libpng15_la-png.o .libs/libpng15_la-pngerror.o .libs/libpng15_la-pngget.o .libs/libpng15_la-pngmem.o .libs/libpng15_la-pngpread.o .libs/libpng15_la-pngread.o .libs/libpng15_la-pngrio.o .libs/libpng15_la-pngrtran.o .libs/libpng15_la-pngrutil.o .libs/libpng15_la-pngset.o .libs/libpng15_la-pngtrans.o .libs/libpng15_la-pngwio.o .libs/libpng15_la-pngwrite.o .libs/libpng15_la-pngwtran.o .libs/libpng15_la-pngwutil.o -L/home/alanger/workspace/softwares/yt-i686/lib/ -L/home/alanger/workspace/softwares/yt-i686/lib64/ -lz -lm -Wl,--version-script=libpng.vers -Wl,-soname -Wl,libpng15.so.15 -o .libs/libpng15.so.15.12.0 /usr/bin/ld: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/ libbfd-2.22-system.so) libtool: link: (cd ".libs" && rm -f "libpng15.so.15" && ln -s "libpng15.so.15.12.0" "libpng15.so.15") libtool: link: (cd ".libs" && rm -f "libpng15.so" && ln -s "libpng15.so.15.12.0" "libpng15.so") libtool: link: ar cru .libs/libpng15.a libpng15_la-png.o libpng15_la-pngerror.o libpng15_la-pngget.o libpng15_la-pngmem.o libpng15_la-pngpread.o libpng15_la-pngread.o libpng15_la-pngrio.o libpng15_la-pngrtran.o libpng15_la-pngrutil.o libpng15_la-pngset.o libpng15_la-pngtrans.o libpng15_la-pngwio.o libpng15_la-pngwrite.o libpng15_la-pngwtran.o libpng15_la-pngwutil.o ar: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/libbfd-2.22-system.so) libtool: link: ranlib .libs/libpng15.a ranlib: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/ libbfd-2.22-system.so) libtool: link: ( cd ".libs" && rm -f "libpng15.la" && ln -s "../ libpng15.la" "libpng15.la" ) cp libpng-config libpng15-config cp libpng.pc libpng15.pc make[1]: Entering directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' test -z "/home/alanger/workspace/softwares/yt-i686/bin" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/bin" /usr/bin/install -c libpng15-config '/home/alanger/workspace/softwares/yt-i686/bin' test -z "/home/alanger/workspace/softwares/yt-i686/lib" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/lib" /bin/bash ./libtool --mode=install /usr/bin/install -c libpng15.la'/home/alanger/workspace/softwares/yt-i686/lib' libtool: install: /usr/bin/install -c .libs/libpng15.so.15.12.0 /home/alanger/workspace/softwares/yt-i686/lib/libpng15.so.15.12.0 libtool: install: (cd /home/alanger/workspace/softwares/yt-i686/lib && { ln -s -f libpng15.so.15.12.0 libpng15.so.15 || { rm -f libpng15.so.15 && ln -s libpng15.so.15.12.0 libpng15.so.15; }; }) libtool: install: (cd /home/alanger/workspace/softwares/yt-i686/lib && { ln -s -f libpng15.so.15.12.0 libpng15.so || { rm -f libpng15.so && ln -s libpng15.so.15.12.0 libpng15.so; }; }) libtool: install: /usr/bin/install -c .libs/libpng15.lai /home/alanger/workspace/softwares/yt-i686/lib/libpng15.la libtool: install: /usr/bin/install -c .libs/libpng15.a /home/alanger/workspace/softwares/yt-i686/lib/libpng15.a libtool: install: chmod 644 /home/alanger/workspace/softwares/yt-i686/lib/libpng15.a libtool: install: ranlib /home/alanger/workspace/softwares/yt-i686/lib/libpng15.a ranlib: /home/alanger/workspace/softwares/yt-i686/lib/libz.so.1: no version information available (required by /usr/lib/ libbfd-2.22-system.so) libtool: finish: PATH="/usr/lib/lightdm/lightdm:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/home/alanger//workspace/projections/bin:/home/alanger/workspace/softwares/gurobi501/linux32/bin:/home/alanger/workspace/projections/bin:/home/alanger/workspace/softwares/gurobi501/linux32/bin:/home/alanger/workspace/softwares/coopr/bin:/usr/gams:/sbin" ldconfig -n /home/alanger/workspace/softwares/yt-i686/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/alanger/workspace/softwares/yt-i686/lib

If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make install-exec-hook make[2]: Entering directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' cd /home/alanger/workspace/softwares/yt-i686/bin; rm -f libpng-config cd /home/alanger/workspace/softwares/yt-i686/bin; ln -s libpng15-config libpng-config + cd /home/alanger/workspace/softwares/yt-i686/lib + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.a + test -f libpng15.a + ln -s libpng15.a libpng.a + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.la + test -f libpng15.la + ln -s libpng15.la libpng.la + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.so + test -f libpng15.so + ln -s libpng15.so libpng.so + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.so.15.12 + test -f libpng15.so.15.12 + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.sl + test -f libpng15.sl + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.dylib + test -f libpng15.dylib + for ext in a la so so.15.12 sl dylib dll.a + rm -f libpng.dll.a + test -f libpng15.dll.a make[2]: Leaving directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' test -z "/home/alanger/workspace/softwares/yt-i686/share/man/man3" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/share/man/man3" /usr/bin/install -c -m 644 libpng.3 libpngpf.3 '/home/alanger/workspace/softwares/yt-i686/share/man/man3' test -z "/home/alanger/workspace/softwares/yt-i686/share/man/man5" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/share/man/man5" /usr/bin/install -c -m 644 png.5 '/home/alanger/workspace/softwares/yt-i686/share/man/man5' test -z "/home/alanger/workspace/softwares/yt-i686/include/libpng15" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/include/libpng15" /usr/bin/install -c -m 644 pnglibconf.h '/home/alanger/workspace/softwares/yt-i686/include/libpng15' test -z "/home/alanger/workspace/softwares/yt-i686/lib/pkgconfig" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/lib/pkgconfig" /usr/bin/install -c -m 644 libpng15.pc '/home/alanger/workspace/softwares/yt-i686/lib/pkgconfig' test -z "/home/alanger/workspace/softwares/yt-i686/include/libpng15" || /bin/mkdir -p "/home/alanger/workspace/softwares/yt-i686/include/libpng15" /usr/bin/install -c -m 644 png.h pngconf.h '/home/alanger/workspace/softwares/yt-i686/include/libpng15' make install-data-hook make[2]: Entering directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' cd /home/alanger/workspace/softwares/yt-i686/include; rm -f png.h pngconf.h pnglibconf.h cd /home/alanger/workspace/softwares/yt-i686/include; ln -s libpng15/png.h png.h cd /home/alanger/workspace/softwares/yt-i686/include; ln -s libpng15/pngconf.h \ pngconf.h cd /home/alanger/workspace/softwares/yt-i686/include; ln -s libpng15/pnglibconf.h \ pnglibconf.h cd /home/alanger/workspace/softwares/yt-i686/lib/pkgconfig; rm -f libpng.pc cd /home/alanger/workspace/softwares/yt-i686/lib/pkgconfig; ln -s libpng15.pc libpng.pc make[2]: Leaving directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' make[1]: Leaving directory `/home/alanger/workspace/softwares/yt-i686/src/libpng-1.5.12' rm -f pngtest pngvalid test -z "dfn.c dfn?.out pngout.png libpng15.pc libpng15-config libpng.vers libpng.sym check.new pnglibconf.* symbols.new pngtest-log.txt scripts/*.out scripts/*.chk scripts/pnglibconf.dfn" || rm -f dfn.c dfn?.out pngout.png libpng15.pc libpng15-config libpng.vers libpng.sym check.new pnglibconf.* symbols.new pngtest-log.txt scripts/*.out scripts/*.chk scripts/pnglibconf.dfn test -z "libpng15.la" || rm -f libpng15.la rm -f "./so_locations" rm -rf .libs _libs rm -f *.o rm -f *.lo make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop. make: *** No rule to make target `setup'. Stop.

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-- ********************************************************************* * * * Dr. Michael Kuhlen Theoretical Astrophysics Center * * email: mqk@astro.berkeley.edu UC Berkeley * * cell phone: (831) 588-1468 B-116 Hearst Field Annex # 3411 * * skype username: mikekuhlen Berkeley, CA 94720 * * * *********************************************************************

-- ********************************************************************* * * * Dr. Michael Kuhlen Theoretical Astrophysics Center * * email: mqk@astro.berkeley.edu UC Berkeley * * cell phone: (831) 588-1468 B-116 Hearst Field Annex # 3411 * * skype username: mikekuhlen Berkeley, CA 94720 * * * *********************************************************************