Hi Dan,

This means that yt isn't able to infer cosmological parameters for that dataset. It looks like you're trying to load a groups file, which is a subset of the full dataset, and it's being read in by the Gadget FOF frontend, which handles group datasets like this for the Gadget simulation code. Arepo and Gadget are supposed to share identical output formats, but it looks like the groups file you're trying to load is subtly different from the sorts of Gadget groups files that yt can already natively load.

Looking at the Gadget FOF frontend, there doesn't appear to be a way to set cosmology parameters by hand. I think the best approach here is probably to modify the Gadget FOF frontend to handle Arepo data.

Unfortunately I don't know much about the Gadget FOF frontend - Britton Smith is the author of that frontend and he may be able to chime in here.


On Mon, Feb 22, 2016 at 1:16 AM, D Mick <danomick@gmail.com> wrote:
Hello all, yt has some of the greatest plotting capabilities, and I greatly enjoy working with yt! Recently I have begun to work with hdf5 data from a large scale galaxy simulation (illustris) and I was wondering how I can work with the data, is there a general munging procedure for getting it into the correct yt format? When I try to plot 

import yt

ds = yt.load("Groups_hdf5_plt_cnt_0150")
yt.SlicePlot(ds, 'x', "density", width = (800.0, 'kpc')).save()
yt.SlicePlot(ds, 'y', "density", width = (800.0, 'kpc')).save()
yt.SlicePlot(ds, 'z', "density", width = (800.0, 'kpc')).save()

I get the following error:

/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/yt/frontends/gadget_fof/data_structures.pyc in _parse_parameter_file(self)

    151         self.periodicity = (True, True, True)

    152         self.current_redshift = hvals["Redshift"]

--> 153         self.omega_lambda = hvals["OmegaLambda"]

    154         self.omega_matter = hvals["Omega0"]

    155         self.hubble_constant = hvals["HubbleParam"]

KeyError: 'OmegaLambda'

I am guessing this is because the field entries do not match up.

Any help is much appreciated!


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