--BrianHi folks,So, it does seem like there is a bug, or I am simply using Rockstar incorrectly...
Just a quick followup: I've now run this on a different machine and verified that the reason I couldn't use Rockstar in parallel was due to a MPI problem. *HOWEVER*, I still have the same Rockstar error that I was reporting before when I was using one core (all using the same script as in my previous email):
http://paste.yt-project.org/show/3747/_______________________________________________On Sun, Aug 4, 2013 at 6:26 PM, Brian O'Shea <bwoshea@gmail.com> wrote:
I'm puzzled about the error, since I can use other parallel yt scripts without any problems (a 4-processor script making projections works just fine). This machine doesn't have infiniband (as warned about at http://yt-project.org/doc/analysis_modules/running_halofinder.html#rockstar-halo-finding), and both FOF and Hop find several hundred halos with my dataset. I'd just use another halo finder, but I'm trying to do something that requires Rockstar to be run inline with Enzo, so I'm stuck with it...Dear yt-users,I'm trying to use the Rockstar halo finder within yt, and am encountering some odd problems. I'm using the main development tree (https://bitbucket.org/yt_analysis/yt) with changeset f936432ed45d, and attempting to use Rockstar to find halos on a small server running Ubuntu 12.04. When I call this script:
---- file test_rockstar.py ----using the command line sequence "mpirun -np 2 python ./test_rockstar.py --parallel", I seem to be getting a seg fault (as can be seen at http://paste.yt-project.org/show/3745/). However, if I use a single processor (with "mpirun -np 1 python ./test_rockstar.py --parallel"), I get a very different error:
from yt.mods import *
from yt.analysis_modules.halo_finding.rockstar.api import RockstarHaloFinder
pf = load("DD0057/data0057")
rh = RockstarHaloFinder(pf)
---
Traceback (most recent call last):
File "./test_rockstar.py", line 6, in <module>
rh = RockstarHaloFinder(pf)
File "/data/bwoshea/galparttest/yt-x86_64/src/yt-hg/yt/analysis_modules/halo_finding/rockstar/rockstar.py", line 230, in __init__
self.pool, self.workgroup = self.runner.setup_pool()
File "/data/bwoshea/galparttest/yt-x86_64/src/yt-hg/yt/analysis_modules/halo_finding/rockstar/rockstar.py", line 112, in setup_pool
(self.num_writers, "writers") ]
File "/data/bwoshea/galparttest/yt-x86_64/src/yt-hg/yt/utilities/parallel_tools/parallel_analysis_interface.py", line 335, in from_sizes
pool.add_workgroup(size, name = name)
File "/data/bwoshea/galparttest/yt-x86_64/src/yt-hg/yt/utilities/parallel_tools/parallel_analysis_interface.py", line 303, in add_workgroup
group = self.comm.comm.Get_group().Incl(ranks)
AttributeError: 'NoneType' object has no attribute 'Get_group'
Does anybody have any idea what might be going on?
Thanks!
Brian
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