I am testing Sam's transpose fix now to see if that changes things. I will let you know very shortly when I am done that and you may then upgrade to the latest version.
On Jan 8, 2013, at 11:56 AM, John Wise wrote:
Yes, I reverted it back to v2.4 a few weeks ago. I can update yt to the latest version to see if it helps with these problems.
On 01/08/2013 11:38 AM, Renyue Cen wrote:
I am using the version that John installed on Pleiades. I got some other unrelated problems with profiling before and John was kind enough to revert back to an older version (I think). Anyway, this is what I got:
Separately, I will try your transpose fix and will let you know.
But the KDTree was really smoking fast (50-100 times compared to without) that makes things very efficient. I would like to thank you for that.
Thanks very much, Renyue
On Jan 8, 2013, at 11:25 AM, Sam Skillman wrote:
I have actually seen this on one other system but I could never reproduce it. Could you tell me the version of yt you are using? If you run "yt instinfo" it should tell you. I haven't seen this bug for the last few months so I thought it was gone.
Additionally, can you try the following at the end of your script:
write_bitmap(im, 'test2.png', transpose=False)
I think there may have been something wrong with the transposing of the image for a short time period a few months ago. I have very sporadic and unreliable internet at AAS but I'll try to respond as quickly as possible.
Sorry for the trouble,
On Jan 7, 2013 10:11 AM, "Renyue Cen" <firstname.lastname@example.org
I did some simple volume rendering with the following script:
volume2 = AMRKDTree(pf, fields=["Dark_Matter_Density"], no_ghost=False, tree_type="domain", le=c-0.5*WW, re=c+0.5*WW) cam = pf.h.camera(c, L, W, N, tf, volume=volume2, no_ghost=False, north_vector=L, steady_north=True) cam.snapshot(fn="%s_iso-DMdensity-%3.3d.png" % (filenameTHIS, j))
I got rather strange results in that the pictures look symmetric, which I am pretty sure can not be true. I attach the obtained plot. Note that I am using KD tree and using 32 cores.
Your help at your earliest convenience is appreciated. Best, Renyue
-- John Wise Assistant Professor of Physics Center for Relativistic Astrophysics, Georgia Tech