On Thu, Apr 28, 2011 at 1:39 PM, Britton Smith
Stephen, nice job tracking that down. This is just another example of how hard it is keep yt easily installable everywhere.
Matt, that link refers to why we upgraded from h5py 1.2 to 1.3. Do you remember why we upgraded hdf5 to 1.8?
To get symbolic link support in HDF5. My reading of the bug is that it's not an issue if you use a shared library HDF5, which only works with fortran-disabled. The yt install script should be installed a non-fortran, shared hdf5. For what it's worth, I've been using HDF5 1.8.6 and h5py 1.3.1 for a while without trouble. My guess is that cc on Kraken prefers static, to the exclusion of the shared library. -Matt
On Thu, Apr 28, 2011 at 1:12 PM, Matthew Turk
wrote: For those of you not on yt-dev, here is some context on the upgrade of hdf5 to 1.8.6:
http://lists.spacepope.org/pipermail/yt-dev-spacepope.org/2011-April/001234....
On Thu, Apr 28, 2011 at 12:03 PM, Stephen Skory
wrote:Britton,
yes, I got the same error as you did. Some searching got me this:
https://trac.macports.org/ticket/28549
which pointed out that h5py-1.3.1 does not support hdf5-1.8.6. Does one of us want to try things with hdf5-1.8.5, or the development branch of h5py?
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