Re: [yt-users] amr_utils

No, this looks more like there are issues with your compiler, and components of yt being compiled with Intel. Compiling yt with anything other than GNU is tricky. You can try flushing it out with this: find /autohome/u118/agarwa23/enzo1.5/src/yt/ -name "*.so" |xargs rm -v find /autohome/u118/agarwa23/enzo1.5/src/yt/ -name "*.o" |xargs rm -v and then re-build. Make sure that if you are on a machine with modules you have the GNU modules loaded, not the Intel modules before this. -Matt On Sat, Feb 6, 2010 at 9:51 AM, Agarwal, Shankar wrote:

Ok. But now I get this...

Traceback (most recent call last):  File "visual.py", line 6, in <module>    from yt.mods import *  File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module>    import yt.lagos as lagos  File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__.py", line 66, in <module>    import PointCombine ImportError: /autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/PointCombine.so: undefined symbol: _intel_fast_memset

Do you think my older version is somehow clashing with the new one?

Shankar

-----Original Message----- From: yt-users-bounces@lists.spacepope.org on behalf of Matthew Turk Sent: Sat 2/6/2010 11:46 AM To: Discussion of the yt analysis package Subject: Re: [yt-users] amr_utils

Hi Shankar,

Looks like you're inside an enzo svn checkout.  To update your entire enzo+yt source tree (which, because yt is included via svn:externals) you should do:

/autohome/u118/agarwa23/enzo1.5/ svn up cd src/yt python2.6 setup.py build_ext -i

This will (in order) put you in the root enzo directory, update your subversion checkout (which may update your Enzo tree to reflect recent bug fixes and so on) of both Enzo+yt, and then make sure that all of the extensions -- of which amr_utils is one! -- are built.  The last step is the most important, and you should probably run this every time you svn up yt.  I'll make a note of this in the documentation.

-Matt

On Sat, Feb 6, 2010 at 9:28 AM, Agarwal, Shankar wrote:

...

Hi,

I just "svn up" my working yt copy (I did not have the volume_rendering earlier). Do I have to "make clean; make" again.

I just tried to run the script...

http://casa.colorado.edu/~skillman/research_and_codes/assets/rot_evolve.txt

on my dataset. But I am getting this error...

Traceback (most recent call last):  File "visual.py", line 6, in <module>    from yt.mods import *  File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module>    import yt.lagos as lagos  File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__.py", line 58, in <module>    import yt.amr_utils as amr_utils ImportError: No module named amr_utils _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

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