To whom it may concern, I am having trouble loading GIZMO data to make a simple slice plot and this is the error I get: yt.utilities.exceptions.YTDomainOverflow: Particle bounds (-934.41559, -727.99188, -1092.047) and (509.55978, 797.46954, 1034.1028) exceed domain bounds [ 0. 0. 0.] code_length and [ 10000. 10000. 10000.] code_length Any help would be really useful. Please send me any questions you may have. Please and thank you, Adrianna Perez
Hi Adriana, Can you share a short code sample that triggers this error? In particular, how are you loading your dataset? Is this a cosmological or non-cosmological output? Nathan On Monday, June 27, 2016, Adrianna Perez <aperez313@toromail.csudh.edu> wrote:
To whom it may concern,
I am having trouble loading GIZMO data to make a simple slice plot and this is the error I get:
yt.utilities.exceptions.YTDomainOverflow: Particle bounds (-934.41559, -727.99188, -1092.047) and (509.55978, 797.46954, 1034.1028) exceed domain bounds [ 0. 0. 0.] code_length and [ 10000. 10000. 10000.] code_length
Any help would be really useful. Please send me any questions you may have.
Please and thank you,
Adrianna Perez
Hi Nathan, Thanks for getting back to me! This is the code I am running and the file "snapshot_020.hdf5" is saved on my desktop. Sorry I do not know the answer to the third question. All I know is that it's simulated data. Code: ds = yt.load("snapshot_020.hdf5") # Create density slices in all three axes. yt.SlicePlot(ds, 'x', "density", width = (1000.0, 'kpc')).save() yt.SlicePlot(ds, 'y', "density", width = (1000.0, 'kpc')).save() yt.SlicePlot(ds, 'z', "density", width = (1000.0, 'kpc')).save() Thank you, Adrianna P. On Mon, Jun 27, 2016 at 6:05 PM, Nathan Goldbaum <nathan12343@gmail.com> wrote:
Hi Adriana,
Can you share a short code sample that triggers this error? In particular, how are you loading your dataset? Is this a cosmological or non-cosmological output?
Nathan
On Monday, June 27, 2016, Adrianna Perez <aperez313@toromail.csudh.edu> wrote:
To whom it may concern,
I am having trouble loading GIZMO data to make a simple slice plot and this is the error I get:
yt.utilities.exceptions.YTDomainOverflow: Particle bounds (-934.41559, -727.99188, -1092.047) and (509.55978, 797.46954, 1034.1028) exceed domain bounds [ 0. 0. 0.] code_length and [ 10000. 10000. 10000.] code_length
Any help would be really useful. Please send me any questions you may have.
Please and thank you,
Adrianna Perez
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Hi Adrianna, My guess is that you might need to set a bounding box on the simulation. There's an example of how to load with a bounding box here: http://yt-project.org/doc/cookbook/gadget_notebook.html especially the lines around here: bbox_lim = 1e5 #kpc bbox = [[-bbox_lim,bbox_lim], [-bbox_lim,bbox_lim], [-bbox_lim,bbox_lim]] ds = yt.load(fname,unit_base=unit_base,bounding_box=bbox) the thing is you'll have to make your box bigger than the extent of all of your particles (which, if you don't know a priori, you could do either with a guess and check, or by explicitly checking their locations with something like: ad = ds.all_data() coordinates = ad[('PartType0', 'Coordinates')] and then checking the max/min coordinate values. -d On Mon, Jun 27, 2016 at 10:52 PM, Adrianna Perez < aperez313@toromail.csudh.edu> wrote:
Hi Nathan,
Thanks for getting back to me! This is the code I am running and the file "snapshot_020.hdf5" is saved on my desktop. Sorry I do not know the answer to the third question. All I know is that it's simulated data.
Code:
ds = yt.load("snapshot_020.hdf5")
# Create density slices in all three axes.
yt.SlicePlot(ds, 'x', "density", width = (1000.0, 'kpc')).save()
yt.SlicePlot(ds, 'y', "density", width = (1000.0, 'kpc')).save()
yt.SlicePlot(ds, 'z', "density", width = (1000.0, 'kpc')).save()
Thank you,
Adrianna P.
On Mon, Jun 27, 2016 at 6:05 PM, Nathan Goldbaum <nathan12343@gmail.com> wrote:
Hi Adriana,
Can you share a short code sample that triggers this error? In particular, how are you loading your dataset? Is this a cosmological or non-cosmological output?
Nathan
On Monday, June 27, 2016, Adrianna Perez <aperez313@toromail.csudh.edu> wrote:
To whom it may concern,
I am having trouble loading GIZMO data to make a simple slice plot and this is the error I get:
yt.utilities.exceptions.YTDomainOverflow: Particle bounds (-934.41559, -727.99188, -1092.047) and (509.55978, 797.46954, 1034.1028) exceed domain bounds [ 0. 0. 0.] code_length and [ 10000. 10000. 10000.] code_length
Any help would be really useful. Please send me any questions you may have.
Please and thank you,
Adrianna Perez
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
participants (3)
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Adrianna Perez
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Desika Narayanan
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Nathan Goldbaum