Hi Sam, OK, I've succeeded in breaking your improved script. When you try and set both parameter and spatial validators, the code stops recognising them. So: add_field("RayTest", function=_RayTest, validators=[ValidateParameter("disk_vector")]) works while add_field("RayTest", function=_RayTest, validators=[ValidateParameter("disk_vector"), ValidateParameter("disk_center"), ValidateSpatial(1, ["x-velocity", "y-velocity", "z-velocity", "x", "y", "z"])]) does not.Which it why it didn't work in my longer script. Perhaps I've put the format in incorrectly? Elizabeth Elizabeth Tasker wrote:
Hi Sam,
Thank you -- my test script now works fine but I've managed to break my longer one so completely it's become impossible to test anything. Oops. However, I think when I tried the method below originally, I put the set_field_parameters in the wrong place, which would explain why they didn't work.
Thanks loads for the example.
Elizabeth
Sam Skillman wrote:
Hi Elizabeth,
So the problem is that when you add_field and ask to validate the height_vector, it doesn't exist yet. I believe you can get the desired behavior with:
from yt.mods import *
def _RayTest(field, data):
center = data.get_field_parameter("center") h_vec = na.array(data.get_field_parameter("height_vector"))
print "center :", center, "h_vec: ", h_vec
return data["Density"]
add_field("RayTest", function=_RayTest)
# Grab data fn = "GravPotential/DD0301/GT_BTAccel_256AMR4_PeHeat_sf5_SNe_0301" pf = load(fn) ray1 = pf.h.ray((2.0, 2.0 ,2.0), (12.0, 12.0, 12.0)) ray1.set_field_parameter('height_vector',na.array([0.,0.,1.])) ray1.set_field_parameter('center',[0.5]*3) ray1["RayTest"]
When I run this I get: center : [0.5, 0.5, 0.5] h_vec: [ 0. 0. 1.]
I'm not sure what dd was in your dd.center since dd wasn't defined in that script, but you should be able to set center to whatever you want here. I also changed density to Density. Best, Sam
On Wed, Aug 10, 2011 at 9:36 AM, Elizabeth Tasker <taskere@mcmaster.ca <mailto:taskere@mcmaster.ca>> wrote:
Hi Matt,
I think this script explains what I mean. When I run it, I get:
/1/home/taskere/yt/yt/data_objects/field_info_container.py in __call__(self, data) 357 doesnt_have.append(p) 358 if len(doesnt_have) > 0: --> 359 raise NeedsParameter(doesnt_have) 360 return True 361
NeedsParameter: (['height_vector'])
As a side note, I think 'ray' sets its own value for the field parameter, "center", making it the start of the ray. If that's true, does it have problems for calling radius? e.g.
ray["Radius"]
where radius would need to be the center of the object, not necessarily the start of the ray? (This particular issue wouldn't affect me, but I thought it might bite someone later).
Elizabeth
Matthew Turk wrote:
Hi Elizabeth,
Could you elaborate on what you mean, and provide an example script?
Thanks,
-Matt
On Aug 10, 2011 7:22 AM, "Elizabeth Tasker" <taskere@mcmaster.ca <mailto:taskere@mcmaster.ca> <mailto:taskere@mcmaster.ca <mailto:taskere@mcmaster.ca>>> wrote: > Hi, > > I'm having problems passing parameters to a ray object. I'm trying: > > ray1 = pf.h.ray( com[c], com[nearestcore], field_parameters = > {'height_vector':na.array([0,0,1]), 'center':dd.center}) > Omega0 = ray1["Omega"] > > and I also tried out: > > ray1.set_field_parameter("height_vector", na.array([0,0,1])) > ray1.set_field_parameter("center", dd.center) > > But it can't recognise them. > > Elizabeth > _______________________________________________ > yt-users mailing list > yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org>>
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Hi Elizabeth, It looks like there might be an issue with the transfer of parameters after using validate spatial, which creates a smoothed covering grid. I'll get back to you when I figure it out. Best, Sam On Thu, Aug 11, 2011 at 2:53 PM, Elizabeth Tasker <taskere@mcmaster.ca>wrote:
Hi Sam,
OK, I've succeeded in breaking your improved script. When you try and set both parameter and spatial validators, the code stops recognising them. So:
add_field("RayTest", function=_RayTest, validators=[ValidateParameter(** "disk_vector")])
works while
add_field("RayTest", function=_RayTest, validators=[ValidateParameter(**"disk_vector"), ValidateParameter("disk_**center"), ValidateSpatial(1, ["x-velocity", "y-velocity", "z-velocity", "x", "y", "z"])])
does not.Which it why it didn't work in my longer script.
Perhaps I've put the format in incorrectly?
Elizabeth
Elizabeth Tasker wrote:
Hi Sam,
Thank you -- my test script now works fine but I've managed to break my longer one so completely it's become impossible to test anything. Oops. However, I think when I tried the method below originally, I put the set_field_parameters in the wrong place, which would explain why they didn't work.
Thanks loads for the example.
Elizabeth
Sam Skillman wrote:
Hi Elizabeth,
So the problem is that when you add_field and ask to validate the height_vector, it doesn't exist yet. I believe you can get the desired behavior with:
from yt.mods import *
def _RayTest(field, data):
center = data.get_field_parameter("**center") h_vec = na.array(data.get_field_**parameter("height_vector"))
print "center :", center, "h_vec: ", h_vec
return data["Density"]
add_field("RayTest", function=_RayTest)
# Grab data fn = "GravPotential/DD0301/GT_**BTAccel_256AMR4_PeHeat_sf5_**SNe_0301" pf = load(fn) ray1 = pf.h.ray((2.0, 2.0 ,2.0), (12.0, 12.0, 12.0)) ray1.set_field_parameter('**height_vector',na.array([0.,0.**,1.])) ray1.set_field_parameter('**center',[0.5]*3) ray1["RayTest"]
When I run this I get: center : [0.5, 0.5, 0.5] h_vec: [ 0. 0. 1.]
I'm not sure what dd was in your dd.center since dd wasn't defined in that script, but you should be able to set center to whatever you want here. I also changed density to Density. Best, Sam
On Wed, Aug 10, 2011 at 9:36 AM, Elizabeth Tasker <taskere@mcmaster.ca<mailto: taskere@mcmaster.ca>> wrote:
Hi Matt,
I think this script explains what I mean. When I run it, I get:
/1/home/taskere/yt/yt/data_**objects/field_info_container.**py in __call__(self, data) 357 doesnt_have.append(p) 358 if len(doesnt_have) > 0: --> 359 raise NeedsParameter(doesnt_have) 360 return True 361
NeedsParameter: (['height_vector'])
As a side note, I think 'ray' sets its own value for the field parameter, "center", making it the start of the ray. If that's true, does it have problems for calling radius? e.g.
ray["Radius"]
where radius would need to be the center of the object, not necessarily the start of the ray? (This particular issue wouldn't affect me, but I thought it might bite someone later).
Elizabeth
Matthew Turk wrote:
Hi Elizabeth,
Could you elaborate on what you mean, and provide an example script?
Thanks,
-Matt
On Aug 10, 2011 7:22 AM, "Elizabeth Tasker" <taskere@mcmaster.ca <mailto:taskere@mcmaster.ca> <mailto:taskere@mcmaster.ca <mailto:taskere@mcmaster.ca>>> wrote: > Hi, > > I'm having problems passing parameters to a ray object. I'm trying: > > ray1 = pf.h.ray( com[c], com[nearestcore], field_parameters = > {'height_vector':na.array([0,**0,1]), 'center':dd.center}) > Omega0 = ray1["Omega"] > > and I also tried out: > > ray1.set_field_parameter("**height_vector", na.array([0,0,1])) > ray1.set_field_parameter("**center", dd.center) > > But it can't recognise them. > > Elizabeth > ______________________________**_________________ > yt-users mailing list > yt-users@lists.spacepope.org <mailto:yt-users@lists.**spacepope.org<yt-users@lists.spacepope.org>
<mailto:yt-users@lists.**spacepope.org<yt-users@lists.spacepope.org> <mailto:yt-users@lists.**spacepope.org<yt-users@lists.spacepope.org>
> http://lists.spacepope.org/**listinfo.cgi/yt-users-** spacepope.org<http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> ------------------------------**------------------------------** ------------
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Elizabeth reported this bug about a week ago, so maybe followups can go on the bug report: http://hg.enzotools.org/yt/issue/295/passing-field-parameters-to-covering-gr... On Thu, Aug 11, 2011 at 5:12 PM, Sam Skillman <samskillman@gmail.com> wrote:
Hi Elizabeth, It looks like there might be an issue with the transfer of parameters after using validate spatial, which creates a smoothed covering grid. I'll get back to you when I figure it out. Best, Sam On Thu, Aug 11, 2011 at 2:53 PM, Elizabeth Tasker <taskere@mcmaster.ca> wrote:
Hi Sam,
OK, I've succeeded in breaking your improved script. When you try and set both parameter and spatial validators, the code stops recognising them. So:
add_field("RayTest", function=_RayTest, validators=[ValidateParameter("disk_vector")])
works while
add_field("RayTest", function=_RayTest, validators=[ValidateParameter("disk_vector"), ValidateParameter("disk_center"), ValidateSpatial(1, ["x-velocity", "y-velocity", "z-velocity", "x", "y", "z"])])
does not.Which it why it didn't work in my longer script.
Perhaps I've put the format in incorrectly?
Elizabeth
Elizabeth Tasker wrote:
Hi Sam,
Thank you -- my test script now works fine but I've managed to break my longer one so completely it's become impossible to test anything. Oops. However, I think when I tried the method below originally, I put the set_field_parameters in the wrong place, which would explain why they didn't work.
Thanks loads for the example.
Elizabeth
Sam Skillman wrote:
Hi Elizabeth,
So the problem is that when you add_field and ask to validate the height_vector, it doesn't exist yet. I believe you can get the desired behavior with:
from yt.mods import *
def _RayTest(field, data):
center = data.get_field_parameter("center") h_vec = na.array(data.get_field_parameter("height_vector"))
print "center :", center, "h_vec: ", h_vec
return data["Density"]
add_field("RayTest", function=_RayTest)
# Grab data fn = "GravPotential/DD0301/GT_BTAccel_256AMR4_PeHeat_sf5_SNe_0301" pf = load(fn) ray1 = pf.h.ray((2.0, 2.0 ,2.0), (12.0, 12.0, 12.0)) ray1.set_field_parameter('height_vector',na.array([0.,0.,1.])) ray1.set_field_parameter('center',[0.5]*3) ray1["RayTest"]
When I run this I get: center : [0.5, 0.5, 0.5] h_vec: [ 0. 0. 1.]
I'm not sure what dd was in your dd.center since dd wasn't defined in that script, but you should be able to set center to whatever you want here. I also changed density to Density. Best, Sam
On Wed, Aug 10, 2011 at 9:36 AM, Elizabeth Tasker <taskere@mcmaster.ca <mailto:taskere@mcmaster.ca>> wrote:
Hi Matt,
I think this script explains what I mean. When I run it, I get:
/1/home/taskere/yt/yt/data_objects/field_info_container.py in __call__(self, data) 357 doesnt_have.append(p) 358 if len(doesnt_have) > 0: --> 359 raise NeedsParameter(doesnt_have) 360 return True 361
NeedsParameter: (['height_vector'])
As a side note, I think 'ray' sets its own value for the field parameter, "center", making it the start of the ray. If that's true, does it have problems for calling radius? e.g.
ray["Radius"]
where radius would need to be the center of the object, not necessarily the start of the ray? (This particular issue wouldn't affect me, but I thought it might bite someone later).
Elizabeth
Matthew Turk wrote:
Hi Elizabeth,
Could you elaborate on what you mean, and provide an example script?
Thanks,
-Matt
On Aug 10, 2011 7:22 AM, "Elizabeth Tasker" <taskere@mcmaster.ca <mailto:taskere@mcmaster.ca> <mailto:taskere@mcmaster.ca <mailto:taskere@mcmaster.ca>>> wrote: > Hi, > > I'm having problems passing parameters to a ray object. I'm trying: > > ray1 = pf.h.ray( com[c], com[nearestcore], field_parameters = > {'height_vector':na.array([0,0,1]), 'center':dd.center}) > Omega0 = ray1["Omega"] > > and I also tried out: > > ray1.set_field_parameter("height_vector", na.array([0,0,1])) > ray1.set_field_parameter("center", dd.center) > > But it can't recognise them. > > Elizabeth > _______________________________________________ > yt-users mailing list > yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org>>
> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
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Ah sorry; didn't realise this was the same issue. On 2011-08-11, at 10:36 PM, Matthew Turk wrote:
Elizabeth reported this bug about a week ago, so maybe followups can go on the bug report:
http://hg.enzotools.org/yt/issue/295/passing-field-parameters-to-covering-gr...
On Thu, Aug 11, 2011 at 5:12 PM, Sam Skillman <samskillman@gmail.com> wrote:
Hi Elizabeth, It looks like there might be an issue with the transfer of parameters after using validate spatial, which creates a smoothed covering grid. I'll get back to you when I figure it out. Best, Sam On Thu, Aug 11, 2011 at 2:53 PM, Elizabeth Tasker <taskere@mcmaster.ca> wrote:
Hi Sam,
OK, I've succeeded in breaking your improved script. When you try and set both parameter and spatial validators, the code stops recognising them. So:
add_field("RayTest", function=_RayTest, validators=[ValidateParameter("disk_vector")])
works while
add_field("RayTest", function=_RayTest, validators=[ValidateParameter("disk_vector"), ValidateParameter("disk_center"), ValidateSpatial(1, ["x-velocity", "y-velocity", "z-velocity", "x", "y", "z"])])
does not.Which it why it didn't work in my longer script.
Perhaps I've put the format in incorrectly?
Elizabeth
Elizabeth Tasker wrote:
Hi Sam,
Thank you -- my test script now works fine but I've managed to break my longer one so completely it's become impossible to test anything. Oops. However, I think when I tried the method below originally, I put the set_field_parameters in the wrong place, which would explain why they didn't work.
Thanks loads for the example.
Elizabeth
Sam Skillman wrote:
Hi Elizabeth,
So the problem is that when you add_field and ask to validate the height_vector, it doesn't exist yet. I believe you can get the desired behavior with:
from yt.mods import *
def _RayTest(field, data):
center = data.get_field_parameter("center") h_vec = na.array(data.get_field_parameter("height_vector"))
print "center :", center, "h_vec: ", h_vec
return data["Density"]
add_field("RayTest", function=_RayTest)
# Grab data fn = "GravPotential/DD0301/GT_BTAccel_256AMR4_PeHeat_sf5_SNe_0301" pf = load(fn) ray1 = pf.h.ray((2.0, 2.0 ,2.0), (12.0, 12.0, 12.0)) ray1.set_field_parameter('height_vector',na.array([0.,0.,1.])) ray1.set_field_parameter('center',[0.5]*3) ray1["RayTest"]
When I run this I get: center : [0.5, 0.5, 0.5] h_vec: [ 0. 0. 1.]
I'm not sure what dd was in your dd.center since dd wasn't defined in that script, but you should be able to set center to whatever you want here. I also changed density to Density. Best, Sam
On Wed, Aug 10, 2011 at 9:36 AM, Elizabeth Tasker <taskere@mcmaster.ca <mailto:taskere@mcmaster.ca>> wrote:
Hi Matt,
I think this script explains what I mean. When I run it, I get:
/1/home/taskere/yt/yt/data_objects/field_info_container.py in __call__(self, data) 357 doesnt_have.append(p) 358 if len(doesnt_have) > 0: --> 359 raise NeedsParameter(doesnt_have) 360 return True 361
NeedsParameter: (['height_vector'])
As a side note, I think 'ray' sets its own value for the field parameter, "center", making it the start of the ray. If that's true, does it have problems for calling radius? e.g.
ray["Radius"]
where radius would need to be the center of the object, not necessarily the start of the ray? (This particular issue wouldn't affect me, but I thought it might bite someone later).
Elizabeth
Matthew Turk wrote:
Hi Elizabeth,
Could you elaborate on what you mean, and provide an example script?
Thanks,
-Matt
On Aug 10, 2011 7:22 AM, "Elizabeth Tasker" <taskere@mcmaster.ca <mailto:taskere@mcmaster.ca> <mailto:taskere@mcmaster.ca <mailto:taskere@mcmaster.ca>>> wrote: > Hi, > > I'm having problems passing parameters to a ray object. I'm trying: > > ray1 = pf.h.ray( com[c], com[nearestcore], field_parameters = > {'height_vector':na.array([0,0,1]), 'center':dd.center}) > Omega0 = ray1["Omega"] > > and I also tried out: > > ray1.set_field_parameter("height_vector", na.array([0,0,1])) > ray1.set_field_parameter("center", dd.center) > > But it can't recognise them. > > Elizabeth > _______________________________________________ > yt-users mailing list > yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org>>
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On line 3337 in yt/data_objects/data_containers.py there is the function definition for "_get_data_from_grid". Try adding the decorator "restore_grid_state", so that it looks like: @restore_grid_state def _get_data_from_grid(self, grid, fields): ll = int(grid.Level == self.level) ... Performance may suffer, which is why this is not typically enabled. If this works and the performance hit is <1% or so we can enable it globally. -Matt On Thu, Aug 11, 2011 at 11:50 PM, Elizabeth Tasker <taskere@mcmaster.ca> wrote:
Ah sorry; didn't realise this was the same issue.
On 2011-08-11, at 10:36 PM, Matthew Turk wrote:
Elizabeth reported this bug about a week ago, so maybe followups can go on the bug report:
http://hg.enzotools.org/yt/issue/295/passing-field-parameters-to-covering-gr...
On Thu, Aug 11, 2011 at 5:12 PM, Sam Skillman <samskillman@gmail.com> wrote:
Hi Elizabeth, It looks like there might be an issue with the transfer of parameters after using validate spatial, which creates a smoothed covering grid. I'll get back to you when I figure it out. Best, Sam On Thu, Aug 11, 2011 at 2:53 PM, Elizabeth Tasker <taskere@mcmaster.ca> wrote:
Hi Sam,
OK, I've succeeded in breaking your improved script. When you try and set both parameter and spatial validators, the code stops recognising them. So:
add_field("RayTest", function=_RayTest, validators=[ValidateParameter("disk_vector")])
works while
add_field("RayTest", function=_RayTest, validators=[ValidateParameter("disk_vector"), ValidateParameter("disk_center"), ValidateSpatial(1, ["x-velocity", "y-velocity", "z-velocity", "x", "y", "z"])])
does not.Which it why it didn't work in my longer script.
Perhaps I've put the format in incorrectly?
Elizabeth
Elizabeth Tasker wrote:
Hi Sam,
Thank you -- my test script now works fine but I've managed to break my longer one so completely it's become impossible to test anything. Oops. However, I think when I tried the method below originally, I put the set_field_parameters in the wrong place, which would explain why they didn't work.
Thanks loads for the example.
Elizabeth
Sam Skillman wrote:
Hi Elizabeth,
So the problem is that when you add_field and ask to validate the height_vector, it doesn't exist yet. I believe you can get the desired behavior with:
from yt.mods import *
def _RayTest(field, data):
center = data.get_field_parameter("center") h_vec = na.array(data.get_field_parameter("height_vector"))
print "center :", center, "h_vec: ", h_vec
return data["Density"]
add_field("RayTest", function=_RayTest)
# Grab data fn = "GravPotential/DD0301/GT_BTAccel_256AMR4_PeHeat_sf5_SNe_0301" pf = load(fn) ray1 = pf.h.ray((2.0, 2.0 ,2.0), (12.0, 12.0, 12.0)) ray1.set_field_parameter('height_vector',na.array([0.,0.,1.])) ray1.set_field_parameter('center',[0.5]*3) ray1["RayTest"]
When I run this I get: center : [0.5, 0.5, 0.5] h_vec: [ 0. 0. 1.]
I'm not sure what dd was in your dd.center since dd wasn't defined in that script, but you should be able to set center to whatever you want here. I also changed density to Density. Best, Sam
On Wed, Aug 10, 2011 at 9:36 AM, Elizabeth Tasker <taskere@mcmaster.ca <mailto:taskere@mcmaster.ca>> wrote:
Hi Matt,
I think this script explains what I mean. When I run it, I get:
/1/home/taskere/yt/yt/data_objects/field_info_container.py in __call__(self, data) 357 doesnt_have.append(p) 358 if len(doesnt_have) > 0: --> 359 raise NeedsParameter(doesnt_have) 360 return True 361
NeedsParameter: (['height_vector'])
As a side note, I think 'ray' sets its own value for the field parameter, "center", making it the start of the ray. If that's true, does it have problems for calling radius? e.g.
ray["Radius"]
where radius would need to be the center of the object, not necessarily the start of the ray? (This particular issue wouldn't affect me, but I thought it might bite someone later).
Elizabeth
Matthew Turk wrote:
Hi Elizabeth,
Could you elaborate on what you mean, and provide an example script?
Thanks,
-Matt
On Aug 10, 2011 7:22 AM, "Elizabeth Tasker" <taskere@mcmaster.ca <mailto:taskere@mcmaster.ca> <mailto:taskere@mcmaster.ca <mailto:taskere@mcmaster.ca>>> wrote: > Hi, > > I'm having problems passing parameters to a ray object. I'm trying: > > ray1 = pf.h.ray( com[c], com[nearestcore], field_parameters = > {'height_vector':na.array([0,0,1]), 'center':dd.center}) > Omega0 = ray1["Omega"] > > and I also tried out: > > ray1.set_field_parameter("height_vector", na.array([0,0,1])) > ray1.set_field_parameter("center", dd.center) > > But it can't recognise them. > > Elizabeth > _______________________________________________ > yt-users mailing list > yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org> <mailto:yt-users@lists.spacepope.org <mailto:yt-users@lists.spacepope.org>>
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participants (3)
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Elizabeth Tasker
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Matthew Turk
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Sam Skillman