Dear all, I have just started using yt3 and would like to display particle densities in a projection plot. It seems that for Enzo data, I can use ('deposit', 'io_density'). With Flash data, however, dd['deposit', 'io_density'] will give me an error message: KeyError: "Unable to open object (Object 'particle_posy' doesn't exist)" I have checked and the particles are there. dd['io', 'particle_posy'] does return the particle y positions, so I am confused. Are there other ways of projecting particle densities for Flash data? Thank you! Yuan
Hi Yuan,
Can you give a shot with "all_density" instead of "io_density"? This looks
like a bug, but that should fix it for now. And, can you file this as a
bug?
-Matt
On Wed Nov 05 2014 at 1:37:13 PM Yuan Li
Dear all,
I have just started using yt3 and would like to display particle densities in a projection plot.
It seems that for Enzo data, I can use ('deposit', 'io_density'). With Flash data, however, dd['deposit', 'io_density'] will give me an error message: KeyError: "Unable to open object (Object 'particle_posy' doesn't exist)"
I have checked and the particles are there. dd['io', 'particle_posy'] does return the particle y positions, so I am confused. Are there other ways of projecting particle densities for Flash data?
Thank you! Yuan _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Hi Yuan, I wanted to agree with Matt, but also wanted to apologize for not answering your earlier email yet. I will look over my scripts and let you know what I come up with. Best, John
On Nov 5, 2014, at 2:38 PM, Matthew Turk
mailto:matthewturk@gmail.com> wrote: Hi Yuan,
Can you give a shot with "all_density" instead of "io_density"? This looks like a bug, but that should fix it for now. And, can you file this as a bug?
-Matt
On Wed Nov 05 2014 at 1:37:13 PM Yuan Li
mailto:yuan@astro.columbia.edu> wrote: Dear all, I have just started using yt3 and would like to display particle densities in a projection plot.
It seems that for Enzo data, I can use ('deposit', 'io_density'). With Flash data, however, dd['deposit', 'io_density'] will give me an error message: KeyError: "Unable to open object (Object 'particle_posy' doesn't exist)"
I have checked and the particles are there. dd['io', 'particle_posy'] does return the particle y positions, so I am confused. Are there other ways of projecting particle densities for Flash data?
Thank you! Yuan _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org mailto:yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org mailto:yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Hi Matt,
dd['deposit', 'all_density'] gives the same error message. I have reported
the bug on bitbucket.
John, no worries! I happened to have tried to make this plot first (and
therefore freaked out), but actually everything else with the particles
seems to work nicely, haha!
Thanks!
Yuan
On Wed, Nov 5, 2014 at 2:38 PM, Matthew Turk
Hi Yuan,
Can you give a shot with "all_density" instead of "io_density"? This looks like a bug, but that should fix it for now. And, can you file this as a bug?
-Matt
On Wed Nov 05 2014 at 1:37:13 PM Yuan Li
wrote: Dear all,
I have just started using yt3 and would like to display particle densities in a projection plot.
It seems that for Enzo data, I can use ('deposit', 'io_density'). With Flash data, however, dd['deposit', 'io_density'] will give me an error message: KeyError: "Unable to open object (Object 'particle_posy' doesn't exist)"
I have checked and the particles are there. dd['io', 'particle_posy'] does return the particle y positions, so I am confused. Are there other ways of projecting particle densities for Flash data?
Thank you! Yuan _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Yuan, Can you try the fix from this pull request? https://bitbucket.org/yt_analysis/yt/pull-request/1294/check-for-particle-fi... https://bitbucket.org/yt_analysis/yt/pull-request/1294/check-for-particle-fi... It should fix your issue. If so, just hit approve on the PR. Thanks, John
On Nov 5, 2014, at 2:53 PM, Yuan Li
mailto:bear0980@gmail.com> wrote: Hi Matt,
dd['deposit', 'all_density'] gives the same error message. I have reported the bug on bitbucket.
John, no worries! I happened to have tried to make this plot first (and therefore freaked out), but actually everything else with the particles seems to work nicely, haha!
Thanks! Yuan
On Wed, Nov 5, 2014 at 2:38 PM, Matthew Turk
mailto:matthewturk@gmail.com> wrote: Hi Yuan, Can you give a shot with "all_density" instead of "io_density"? This looks like a bug, but that should fix it for now. And, can you file this as a bug?
-Matt
On Wed Nov 05 2014 at 1:37:13 PM Yuan Li
mailto:yuan@astro.columbia.edu> wrote: Dear all, I have just started using yt3 and would like to display particle densities in a projection plot.
It seems that for Enzo data, I can use ('deposit', 'io_density'). With Flash data, however, dd['deposit', 'io_density'] will give me an error message: KeyError: "Unable to open object (Object 'particle_posy' doesn't exist)"
I have checked and the particles are there. dd['io', 'particle_posy'] does return the particle y positions, so I am confused. Are there other ways of projecting particle densities for Flash data?
Thank you! Yuan _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org mailto:yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org mailto:yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
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participants (4)
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John ZuHone
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Matthew Turk
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Yuan Li
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Yuan Li