Hi, I am running ENZO on NCSA,Cobalt. I have Enzo cosmology simulation output (RD0002 directory with a bunch of RedshiftOutput0002.cpu**** files) When I do 'iyt' I get ... [sagarwal@co-login jj]$ iyt yt.lagos WARNING 2009-06-25 14:47:03,269 No HDF4 support yt.lagos WARNING 2009-06-25 14:47:03,284 No PyTables. Data serialization will fail. /u/ac/sagarwal/enzov1.5/src/yt/yt/lagos/__init__.py:55: DeprecationWarning: the sets module is deprecated import sets Welcome to yt! In [1]: from yt.mods import * In [2]: pf=load('RedshiftOutput0002') ERROR: An unexpected error occurred while tokenizing input The following traceback may be corrupted or invalid The error message is: ('EOF in multi-line statement', (389, 0)) --------------------------------------------------------------------------- ValueError Traceback (most recent call last) /u/ac/sagarwal/enzov1.5/src/yt/scripts/iyt in <module>() ----> 1 2 3 4 5 /u/ac/sagarwal/enzov1.5/src/yt/doc/yt-ia64/lib/python2.6/site-packages/matplotlib/mlab.pyc in load(fname, comments, delimiter, converters, skiprows, usecols, unpack, dtype) 1457 else: 1458 row = [converterseq[j](val) -> 1459 for j,val in enumerate(splitfunc(line))] 1460 thisLen = len(row) 1461 X.append(row) ValueError: invalid literal for float(): InitialCycleNumber In [3]: I thought ENZO and YT are customized for NCSA,Cobalt. Feedback is highly appreciated. Shankar KU Cosmology I recently (today) got the latest ENZO version through svn. I built ENZO, INITS, RING and YT following the instructions on enzo webpage. I have following issues... INITS and RING went fine. ENZO compiled and installed fine (I could get enzo.exe) but gave me this on "make install"... [sagarwal@co-login enzo]$ make install if [ ! -e ../../bin ]; then mkdir ../../bin; fi cp: cannot stat `gridtests.exe': No such file or directory make: [install] Error 1 (ignored) cp: cannot stat `ealfloattests.exe': No such file or directory make: [install] Error 1 (ignored) cp: cannot stat `ealinttests.exe': No such file or directory make: [install] Error 1 (ignored) cp: cannot stat `readgridtests.exe': No such file or directory make: [install] Error 1 (ignored) cp: cannot stat `analysisbaseclasstests.exe': No such file or directory make: [install] Error 1 (ignored) make -s show-flags >& ../../bin/enzo.show-flags make -s show-config >& ../../bin/enzo.show-config make -s show-version >& ../../bin/enzo.show-version make -s show-diff >& ../../bin/enzo.show-diff [sagarwal@co-login enzo]$ While building YT...i got the following warnings/errors... H5E.c: in function `H5Eprint': H5E.c:467: warning: trace info was not inserted H5FD.c(3670): warning #810: conversion from "void *" to "herr_t={int}" may lose significant bits HGOTO_ERROR(H5E_VFL, H5E_UNSUPPORTED, NULL, "file driver has no `get_vfd_handle' method"); H5FDmulti.c(208): warning #266: function "strlen" declared implicitly if (NULL==(x=malloc(strlen(s)+1))) return NULL; h5diff_dset.c(259): warning #186: pointless comparison of unsigned integer with zero if (storage_size1<0 || storage_size2<0) running build running build_ext INFO: Can't locate Tcl/Tk libs and/or headers building '_struct' extension Failed to find the necessary bits to build these modules: _hashlib _sqlite3 _ssl _tkinter bsddb185 dl imageop sunaudiodev To find the necessary bits, look in setup.py in detect_modules() for the module's name. Running from numpy source directory. /u/ac/sagarwal/enzov1.5/src/yt/doc/yt-ia64/src/numpy-1.2.1/numpy/distutils/misc_util.py:1343: DeprecationWarning: os.popen4 is deprecated. Use the subprocess module. sin, sout = os.popen4('svnversion') non-existing path in 'numpy/distutils': 'site.cfg' F2PY Version 2_5972 blas_opt_info: blas_mkl_info: libraries mkl,vml,guide not found in /u/ac/sagarwal/enzov1.5/src/yt/doc/yt-ia64/lib libraries mkl,vml,guide not found in /usr/local/lib libraries mkl,vml,guide not found in /usr/lib NOT AVAILABLE compile options: '-Inumpy/core/src -Inumpy/core/include -I/u/ac/sagarwal/enzov1.5/src/yt/doc/yt-ia64/include/python2.6 -c' gcc: _configtest.c gcc -pthread _configtest.o -o _configtest _configtest failure. removing: _configtest.c _configtest.o _configtest Running from numpy source directory. /u/ac/sagarwal/enzov1.5/src/yt/doc/yt-ia64/src/numpy-1.2.1/numpy/distutils/misc_util.py:1343: DeprecationWarning: os.popen4 is deprecated. Use the subprocess module. sin, sout = os.popen4('svnversion') non-existing path in 'numpy/distutils': 'site.cfg' F2PY Version 2_5972 blas_opt_info: blas_mkl_info: libraries mkl,vml,guide not found in /u/ac/sagarwal/enzov1.5/src/yt/doc/yt-ia64/lib libraries mkl,vml,guide not found in /usr/local/lib libraries mkl,vml,guide not found in /usr/lib NOT AVAILABLE atlas_info: libraries f77blas,cblas,atlas not found in /u/ac/sagarwal/enzov1.5/src/yt/doc/yt-ia64/lib libraries lapack_atlas not found in /u/ac/sagarwal/enzov1.5/src/yt/doc/yt-ia64/lib libraries f77blas,cblas,atlas not found in /usr/local/lib libraries lapack_atlas not found in /usr/local/lib libraries f77blas,cblas,atlas not found in /usr/lib libraries lapack_atlas not found in /usr/lib numpy.distutils.system_info.atlas_info NOT AVAILABLE BUILDING MATPLOTLIB matplotlib: 0.98.5.2 python: 2.6.1 (r261:67515, Jun 24 2009, 18:14:59) [GCC 4.1.2 20070115 (prerelease) (SUSE Linux)] platform: linux2 REQUIRED DEPENDENCIES numpy: 1.2.1 freetype2: 9.8.3 OPTIONAL BACKEND DEPENDENCIES libpng: 1.2.8 Tkinter: no * TKAgg requires Tkinter wxPython: no * wxPython not found Gtk+: no * Building for Gtk+ requires pygtk; you must be able * to "import gtk" in your build/install environment Mac OS X native: no Qt: no Qt4: no Cairo: no OPTIONAL DATE/TIMEZONE DEPENDENCIES datetime: present, version unknown dateutil: matplotlib will provide pytz: matplotlib will provide adding pytz OPTIONAL USETEX DEPENDENCIES dvipng: no ghostscript: 8.15.3 latex: no [Edit setup.cfg to suppress the above messages] BUILDING IPYTHON python: 2.6.1 (r261:67515, Jun 24 2009, 18:14:59) [GCC 4.1.2 20070115 (prerelease) (SUSE Linux)] platform: linux2 OPTIONAL DEPENDENCIES zope.Interface: Not found (required for parallel computing capabilities) Twisted: Not found (required for parallel computing capabilities) Foolscap: Not found (required for parallel computing capabilities) OpenSSL: Not found (required if you want security in the parallel computing capabilities) sphinx: Not found (required for building documentation) pygments: Not found (required for syntax highlighting documentation) nose: Not found (required for running the test suite) pexpect: no (required for running standalone doctests) -------------------
participants (2)
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Agarwal, Shankar
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Matthew Turk