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Stephanie Tonnesen

24 Jan 2014 24 Jan '14

11:47 p.m.

Hi all,

I am trying to make my phase plots smaller so they can fit more nicely into a paper. Alternatively, I would be fine with upping the font size so when I shrink them you can read the axes. I found advise on how to do this for slices, but not for phase_objects.

pc = PlotCollection(pf)

tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"])

pc.add_phase_object(tracerp25,["Density","z-velocity","CellMassSolar"],weight=None,x_bins=50,y_bins=50,y_bounds = [-4e7,8e7],x_bounds=[5e-28,5e-23],x_log=True,y_log=False)

Any help is much appreciated!

Thanks,

Stephanie

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Stephanie Tonnesen

26 Jan 26 Jan

6:42 p.m.

Hi all,

Just as a quick update, I tried to change to using

plot = PhasePlot(tracerp25,"Density","z-velocity",["CellMassSolar"],weight=None) plot.save()

and got an error: name 'PhasePlot' is not defined.

Thanks,

Stephanie

On Fri, Jan 24, 2014 at 3:47 PM, Stephanie Tonnesen stonnes@gmail.com...wrote:

...

Hi all,

pc = PlotCollection(pf)

tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"])

pc.add_phase_object(tracerp25,["Density","z-velocity","CellMassSolar"],weight=None,x_bins=50,y_bins=50,y_bounds = [-4e7,8e7],x_bounds=[5e-28,5e-23],x_log=True,y_log=False)

Any help is much appreciated!

Thanks,

Stephanie

John ZuHone

6:44 p.m.

Hi Stephanie,

What is your version of yt? PhasePlot is 2.6 and later.

Best,

John

On Jan 26, 2014, at 10:42 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

...

Hi all,

Just as a quick update, I tried to change to using

plot = PhasePlot(tracerp25,"Density","z-velocity",["CellMassSolar"],weight=None) plot.save()

and got an error: name 'PhasePlot' is not defined.

Thanks,

Stephanie

On Fri, Jan 24, 2014 at 3:47 PM, Stephanie Tonnesen stonnes@gmail.com... wrote: Hi all,

pc = PlotCollection(pf)

tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"])
pc.add_phase_object(tracerp25,["Density","z-velocity","CellMassSolar"],weight=None,x_bins=50,y_bins=50,y_bounds = [-4e7,8e7],x_bounds=[5e-28,5e-23],x_log=True,y_log=False)

Any help is much appreciated!

Thanks,

Stephanie

yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org...

Stephanie Tonnesen

11:32 p.m.

Hi John,

Ah, okay! Updating my yt made it work. yt version 2.7-dev.

EXCEPT that I can't get it to plot the Density on the x-axis in log space!

alld = pf.h.all_data()

tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"])

plot = PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=30) plot.set_log("Density",True) plot.set_log("z-velocity",False) plot.set_zlim("CellMassMsun",1e3,1e9) plot.save()

Any more advice? Thanks!

Stephanie

On Sun, Jan 26, 2014 at 10:44 AM, John ZuHone jzuhone@gmail.com... wrote:

...

Hi Stephanie,

What is your version of yt? PhasePlot is 2.6 and later.

Best,

John

On Jan 26, 2014, at 10:42 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi all,

Just as a quick update, I tried to change to using

plot = PhasePlot(tracerp25,"Density","z-velocity",["CellMassSolar"],weight=None) plot.save()

and got an error: name 'PhasePlot' is not defined.

Thanks,

Stephanie

On Fri, Jan 24, 2014 at 3:47 PM, Stephanie Tonnesen stonnes@gmail.com...wrote:

Hi all,

pc = PlotCollection(pf)

tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"])

pc.add_phase_object(tracerp25,["Density","z-velocity","CellMassSolar"],weight=None,x_bins=50,y_bins=50,y_bounds = [-4e7,8e7],x_bounds=[5e-28,5e-23],x_log=True,y_log=False)

Any help is much appreciated!

Thanks,

Stephanie

yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org...

John ZuHone

11:34 p.m.

Hi Stephanie,

Ah yes, this is a problem I encountered just on Friday. We haven't set up PhasePlot or ProfilePlot to allow you to choose what scaling the plot is in.

Since I need it too, it was already on my todo list. So I'll do it tomorrow.

Best,

John

On Jan 26, 2014, at 3:32 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

...

Hi John,

Ah, okay! Updating my yt made it work. yt version 2.7-dev.

EXCEPT that I can't get it to plot the Density on the x-axis in log space!

alld = pf.h.all_data()

tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"])

Any more advice? Thanks!

Stephanie

On Sun, Jan 26, 2014 at 10:44 AM, John ZuHone jzuhone@gmail.com... wrote: Hi Stephanie,

What is your version of yt? PhasePlot is 2.6 and later.

Best,

John

On Jan 26, 2014, at 10:42 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi all,

Just as a quick update, I tried to change to using

plot = PhasePlot(tracerp25,"Density","z-velocity",["CellMassSolar"],weight=None) plot.save()

and got an error: name 'PhasePlot' is not defined.

Thanks,

Stephanie

On Fri, Jan 24, 2014 at 3:47 PM, Stephanie Tonnesen stonnes@gmail.com... wrote: Hi all,

pc = PlotCollection(pf)

Any help is much appreciated!

Thanks,

Stephanie

yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org...

Stephanie Tonnesen

11:38 p.m.

Sweet! Thanks! (I really need to update more often and see what new cool things I can do...)

Stephanie

On Sun, Jan 26, 2014 at 3:34 PM, John ZuHone jzuhone@gmail.com... wrote:

...

Hi Stephanie,

Ah yes, this is a problem I encountered just on Friday. We haven't set up PhasePlot or ProfilePlot to allow you to choose what scaling the plot is in.

Since I need it too, it was already on my todo list. So I'll do it tomorrow.

Best,

John

On Jan 26, 2014, at 3:32 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi John,

Ah, okay! Updating my yt made it work. yt version 2.7-dev.

EXCEPT that I can't get it to plot the Density on the x-axis in log space!

alld = pf.h.all_data()

tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"])

Any more advice? Thanks!

Stephanie

On Sun, Jan 26, 2014 at 10:44 AM, John ZuHone jzuhone@gmail.com... wrote:

Hi Stephanie,

What is your version of yt? PhasePlot is 2.6 and later.

Best,

John

On Jan 26, 2014, at 10:42 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi all,

Just as a quick update, I tried to change to using

plot = PhasePlot(tracerp25,"Density","z-velocity",["CellMassSolar"],weight=None) plot.save()

and got an error: name 'PhasePlot' is not defined.

Thanks,

Stephanie

On Fri, Jan 24, 2014 at 3:47 PM, Stephanie Tonnesen stonnes@gmail.com...wrote:

Hi all,

pc = PlotCollection(pf)

tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"])

pc.add_phase_object(tracerp25,["Density","z-velocity","CellMassSolar"],weight=None,x_bins=50,y_bins=50,y_bounds = [-4e7,8e7],x_bounds=[5e-28,5e-23],x_log=True,y_log=False)

Any help is much appreciated!

Thanks,

Stephanie

yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org...

John ZuHone

27 Jan 27 Jan

7:31 p.m.

Stephanie,

So you don't have to wait for me to finish this, as a workaround/hack you can do this:

pf.field_info["Density"].take_log=True

which should get you the result you want.

Best,

John

On Jan 26, 2014, at 3:38 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

...

Sweet! Thanks! (I really need to update more often and see what new cool things I can do...)

Stephanie

On Sun, Jan 26, 2014 at 3:34 PM, John ZuHone jzuhone@gmail.com... wrote: Hi Stephanie,

Ah yes, this is a problem I encountered just on Friday. We haven't set up PhasePlot or ProfilePlot to allow you to choose what scaling the plot is in.

Since I need it too, it was already on my todo list. So I'll do it tomorrow.

Best,

John

On Jan 26, 2014, at 3:32 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi John,

Ah, okay! Updating my yt made it work. yt version 2.7-dev.

EXCEPT that I can't get it to plot the Density on the x-axis in log space!

alld = pf.h.all_data()

tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"])

Any more advice? Thanks!

Stephanie

On Sun, Jan 26, 2014 at 10:44 AM, John ZuHone jzuhone@gmail.com... wrote: Hi Stephanie,

What is your version of yt? PhasePlot is 2.6 and later.

Best,

John

On Jan 26, 2014, at 10:42 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi all,

Just as a quick update, I tried to change to using

plot = PhasePlot(tracerp25,"Density","z-velocity",["CellMassSolar"],weight=None) plot.save()

and got an error: name 'PhasePlot' is not defined.

Thanks,

Stephanie

On Fri, Jan 24, 2014 at 3:47 PM, Stephanie Tonnesen stonnes@gmail.com... wrote: Hi all,

pc = PlotCollection(pf)

Any help is much appreciated!

Thanks,

Stephanie

yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org...

Stephanie Tonnesen

28 Jan 28 Jan

6:09 p.m.

Hi John (and all users!),

Thanks, this definitely worked! Now I am trying to make my axes look a bit nicer. I would like to change my y-axis label and rotate my x-axis ticklabels by 45 degrees or only print every other ticklabel. I tried to use the directions from the SlicePlot example, http://yt-project.org/docs/dev/cookbook/simple_plots.html#showing-and-hiding...,

plot = PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=13)#,x_bounds=[3e-28,5e-23],y_bounds=[-7e7,1.2e8]) plot.set_log("Density",True) plot.set_log("z-velocity",False) plot.set_zlim("CellMassMsun",1e4,1e9) plot.set_figure_size(3)

ax = plot.plots['z-velocity'].axes ax.set_ylabel(r'z-velocity (10$8$ cm/s)') for label in ax.xaxis.get_ticklabels(): label.set_rotation(45)

plot.save()

but get an error message:

ax = plot.plots['z-velocity'].axes KeyError: 'z-velocity'

I get the same error if I use 'Density' on that line instead.

Thanks in advance,

Stephanie

On Mon, Jan 27, 2014 at 11:31 AM, John ZuHone jzuhone@gmail.com... wrote:

...

Stephanie,

So you don't have to wait for me to finish this, as a workaround/hack you can do this:

pf.field_info["Density"].take_log=True

which should get you the result you want.

Best,

John

On Jan 26, 2014, at 3:38 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Sweet! Thanks! (I really need to update more often and see what new cool things I can do...)

Stephanie

On Sun, Jan 26, 2014 at 3:34 PM, John ZuHone jzuhone@gmail.com... wrote:

Hi Stephanie,

Ah yes, this is a problem I encountered just on Friday. We haven't set up PhasePlot or ProfilePlot to allow you to choose what scaling the plot is in.

Since I need it too, it was already on my todo list. So I'll do it tomorrow.

Best,

John

On Jan 26, 2014, at 3:32 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi John,

Ah, okay! Updating my yt made it work. yt version 2.7-dev.

EXCEPT that I can't get it to plot the Density on the x-axis in log space!

alld = pf.h.all_data()

tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"])

Any more advice? Thanks!

Stephanie

On Sun, Jan 26, 2014 at 10:44 AM, John ZuHone jzuhone@gmail.com... wrote:

Hi Stephanie,

What is your version of yt? PhasePlot is 2.6 and later.

Best,

John

On Jan 26, 2014, at 10:42 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi all,

Just as a quick update, I tried to change to using

plot = PhasePlot(tracerp25,"Density","z-velocity",["CellMassSolar"],weight=None) plot.save()

and got an error: name 'PhasePlot' is not defined.

Thanks,

Stephanie

On Fri, Jan 24, 2014 at 3:47 PM, Stephanie Tonnesen stonnes@gmail.com...wrote:

Hi all,

pc = PlotCollection(pf)

tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"])

pc.add_phase_object(tracerp25,["Density","z-velocity","CellMassSolar"],weight=None,x_bins=50,y_bins=50,y_bounds = [-4e7,8e7],x_bounds=[5e-28,5e-23],x_log=True,y_log=False)

Any help is much appreciated!

Thanks,

Stephanie

yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org...

Nathan Goldbaum

9 p.m.

Hi Stephanie,

Phase plots are keyed with the z axis name. Try:

ax = plot.plots['CellMassMsun'].axes

-Nathan

On Tue, Jan 28, 2014 at 7:09 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

...

Hi John (and all users!),

plot = PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=13)#,x_bounds=[3e-28,5e-23],y_bounds=[-7e7,1.2e8])

plot.set_log("Density",True) plot.set_log("z-velocity",False) plot.set_zlim("CellMassMsun",1e4,1e9) plot.set_figure_size(3)

ax = plot.plots['z-velocity'].axes ax.set_ylabel(r'z-velocity (10$8$ cm/s)') for label in ax.xaxis.get_ticklabels(): label.set_rotation(45)

plot.save()

but get an error message:

ax = plot.plots['z-velocity'].axes KeyError: 'z-velocity'

I get the same error if I use 'Density' on that line instead.

Thanks in advance,

Stephanie

On Mon, Jan 27, 2014 at 11:31 AM, John ZuHone jzuhone@gmail.com... wrote: >

Stephanie,

So you don't have to wait for me to finish this, as a workaround/hack you can do this:

pf.field_info["Density"].take_log=True

which should get you the result you want.

Best,

John

On Jan 26, 2014, at 3:38 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Sweet! Thanks! (I really need to update more often and see what new cool things I can do...)

Stephanie

On Sun, Jan 26, 2014 at 3:34 PM, John ZuHone jzuhone@gmail.com... wrote: >

Hi Stephanie,

Ah yes, this is a problem I encountered just on Friday. We haven't set up PhasePlot or ProfilePlot to allow you to choose what scaling the plot is in.

Since I need it too, it was already on my todo list. So I'll do it tomorrow.

Best,

John

On Jan 26, 2014, at 3:32 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi John,

Ah, okay! Updating my yt made it work. yt version 2.7-dev.

EXCEPT that I can't get it to plot the Density on the x-axis in log space!

alld = pf.h.all_data()

tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"])

Any more advice? Thanks!

Stephanie

On Sun, Jan 26, 2014 at 10:44 AM, John ZuHone jzuhone@gmail.com... wrote: >

Hi Stephanie,

What is your version of yt? PhasePlot is 2.6 and later.

Best,

John

On Jan 26, 2014, at 10:42 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi all,

Just as a quick update, I tried to change to using

plot = PhasePlot(tracerp25,"Density","z-velocity",["CellMassSolar"],weight=None) plot.save()

and got an error: name 'PhasePlot' is not defined.

Thanks,

Stephanie

On Fri, Jan 24, 2014 at 3:47 PM, Stephanie Tonnesen stonnes@gmail.com... wrote: >

Hi all,

pc = PlotCollection(pf)

tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"])

pc.add_phase_object(tracerp25,["Density","z-velocity","CellMassSolar"],weight=None,x_bins=50,y_bins=50,y_bounds = [-4e7,8e7],x_bounds=[5e-28,5e-23],x_log=True,y_log=False)

Any help is much appreciated!

Thanks,

Stephanie

yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org...

Stephanie Tonnesen

10:55 p.m.

Hi Nathan,

Thanks! I am no longer getting a Key Error, but the commands are simply being ignored. Has this axis functionality been added to PhasePlot?

On Tue, Jan 28, 2014 at 1:00 PM, Nathan Goldbaum nathan12343@gmail.com...wrote:

...

Hi Stephanie,

Phase plots are keyed with the z axis name. Try:

ax = plot.plots['CellMassMsun'].axes

-Nathan

On Tue, Jan 28, 2014 at 7:09 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi John (and all users!),

http://yt-project.org/docs/dev/cookbook/simple_plots.html#showing-and-hiding... ,

plot =

PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=13)#,x_bounds=[3e-28,5e-23],y_bounds=[-7e7,1.2e8])

plot.set_log("Density",True) plot.set_log("z-velocity",False) plot.set_zlim("CellMassMsun",1e4,1e9) plot.set_figure_size(3)

ax = plot.plots['z-velocity'].axes ax.set_ylabel(r'z-velocity (10$8$ cm/s)') for label in ax.xaxis.get_ticklabels(): label.set_rotation(45)

plot.save()

but get an error message:

ax = plot.plots['z-velocity'].axes KeyError: 'z-velocity'

I get the same error if I use 'Density' on that line instead.

Thanks in advance,

Stephanie

On Mon, Jan 27, 2014 at 11:31 AM, John ZuHone jzuhone@gmail.com... wrote: >

Stephanie,

So you don't have to wait for me to finish this, as a workaround/hack you can do this:

pf.field_info["Density"].take_log=True

which should get you the result you want.

Best,

John

On Jan 26, 2014, at 3:38 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Sweet! Thanks! (I really need to update more often and see what new cool things I can do...)

Stephanie

On Sun, Jan 26, 2014 at 3:34 PM, John ZuHone jzuhone@gmail.com... wrote: >

Hi Stephanie,

Ah yes, this is a problem I encountered just on Friday. We haven't set up PhasePlot or ProfilePlot to allow you to choose what scaling the plot is in.

Since I need it too, it was already on my todo list. So I'll do it tomorrow.

Best,

John

On Jan 26, 2014, at 3:32 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi John,

Ah, okay! Updating my yt made it work. yt version 2.7-dev.

EXCEPT that I can't get it to plot the Density on the x-axis in log space!

alld = pf.h.all_data()

tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"])

plot =

PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=30) plot.set_log("Density",True) plot.set_log("z-velocity",False) plot.set_zlim("CellMassMsun",1e3,1e9) plot.save()

Any more advice? Thanks!

Stephanie

On Sun, Jan 26, 2014 at 10:44 AM, John ZuHone jzuhone@gmail.com... wrote: >

Hi Stephanie,

What is your version of yt? PhasePlot is 2.6 and later.

Best,

John

On Jan 26, 2014, at 10:42 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi all,

Just as a quick update, I tried to change to using

plot =

PhasePlot(tracerp25,"Density","z-velocity",["CellMassSolar"],weight=None) plot.save()

and got an error: name 'PhasePlot' is not defined.

Thanks,

Stephanie

On Fri, Jan 24, 2014 at 3:47 PM, Stephanie Tonnesen stonnes@gmail.com... wrote: >

Hi all,

pc = PlotCollection(pf)

tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"])

pc.add_phase_object(tracerp25,["Density","z-velocity","CellMassSolar"],weight=None,x_bins=50,y_bins=50,y_bounds = [-4e7,8e7],x_bounds=[5e-28,5e-23],x_log=True,y_log=False)

Any help is much appreciated!

Thanks,

Stephanie

yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org...

Nathan Goldbaum

11:16 p.m.

It should be working. You're actually directly manipulating the matplotlib axes object so this has nothing to do with what has or hasn't been implemented in yt.

It looks like the issue is actually due to an oversight in the implementation of PhasePlot._setup_plots().

I've fixed it in my local copy by doing the following:

diff -r ff7f35e02f27 yt/visualization/profile_plotter.py --- a/yt/visualization/profile_plotter.py Mon Jan 27 11:52:18 2014 -0500 +++ b/yt/visualization/profile_plotter.py Tue Jan 28 12:13:42 2014 -0800 @@ -653,6 +653,7 @@ [ax.xaxis.label, ax.yaxis.label, cbax.yaxis.label] for label in labels: label.set_color(self._font_color)

self._plot_valid = True

def save(self, name=None, mpl_kwargs=None): r"""

This is in yt 3.0dev, so your line numbers may be slightly different if you're running the yt 2.6.1 release.

Let me know if that works for you and I'll open a PR for this patch.

-Nathan

On Tue, Jan 28, 2014 at 11:55 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

...

Hi Nathan,

Thanks! I am no longer getting a Key Error, but the commands are simply being ignored. Has this axis functionality been added to PhasePlot?

On Tue, Jan 28, 2014 at 1:00 PM, Nathan Goldbaum nathan12343@gmail.com... wrote: >

Hi Stephanie,

Phase plots are keyed with the z axis name. Try:

ax = plot.plots['CellMassMsun'].axes

-Nathan

On Tue, Jan 28, 2014 at 7:09 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi John (and all users!),

http://yt-project.org/docs/dev/cookbook/simple_plots.html#showing-and-hiding...,

plot =

PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=13)#,x_bounds=[3e-28,5e-23],y_bounds=[-7e7,1.2e8])

plot.set_log("Density",True) plot.set_log("z-velocity",False) plot.set_zlim("CellMassMsun",1e4,1e9) plot.set_figure_size(3)

ax = plot.plots['z-velocity'].axes ax.set_ylabel(r'z-velocity (10$8$ cm/s)') for label in ax.xaxis.get_ticklabels(): label.set_rotation(45)

plot.save()

but get an error message:

ax = plot.plots['z-velocity'].axes KeyError: 'z-velocity'

I get the same error if I use 'Density' on that line instead.

Thanks in advance,

Stephanie

On Mon, Jan 27, 2014 at 11:31 AM, John ZuHone jzuhone@gmail.com... wrote: >

Stephanie,

So you don't have to wait for me to finish this, as a workaround/hack you can do this:

pf.field_info["Density"].take_log=True

which should get you the result you want.

Best,

John

On Jan 26, 2014, at 3:38 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Sweet! Thanks! (I really need to update more often and see what new cool things I can do...)

Stephanie

On Sun, Jan 26, 2014 at 3:34 PM, John ZuHone jzuhone@gmail.com... wrote: >

Hi Stephanie,

Ah yes, this is a problem I encountered just on Friday. We haven't set up PhasePlot or ProfilePlot to allow you to choose what scaling the plot is in.

Since I need it too, it was already on my todo list. So I'll do it tomorrow.

Best,

John

On Jan 26, 2014, at 3:32 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi John,

Ah, okay! Updating my yt made it work. yt version 2.7-dev.

EXCEPT that I can't get it to plot the Density on the x-axis in log space!

alld = pf.h.all_data()

tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"])

plot =

Any more advice? Thanks!

Stephanie

On Sun, Jan 26, 2014 at 10:44 AM, John ZuHone jzuhone@gmail.com... wrote: >

Hi Stephanie,

What is your version of yt? PhasePlot is 2.6 and later.

Best,

John

On Jan 26, 2014, at 10:42 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi all,

Just as a quick update, I tried to change to using

plot =

PhasePlot(tracerp25,"Density","z-velocity",["CellMassSolar"],weight=None) plot.save()

and got an error: name 'PhasePlot' is not defined.

Thanks,

Stephanie

On Fri, Jan 24, 2014 at 3:47 PM, Stephanie Tonnesen stonnes@gmail.com... wrote: >

> Hi all, > > I am trying to make my phase plots smaller so they can fit more > nicely > into a paper. Alternatively, I would be fine with upping the font > size so > when I shrink them you can read the axes. I found advise on how to > do this > for slices, but not for phase_objects. > > pc = PlotCollection(pf) > > tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", > "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"]) > > > > pc.add_phase_object(tracerp25,["Density","z-velocity","CellMassSolar"],weight=None,x_bins=50,y_bins=50,y_bounds > = [-4e7,8e7],x_bounds=[5e-28,5e-23],x_log=True,y_log=False) > > Any help is much appreciated! > > Thanks, > > Stephanie

yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org...

Stephanie Tonnesen

11:28 p.m.

Genius! Yes, this did work. I am running yt 2.7dev, so as you said, the line numbers were a bit different. If you open a PR for this patch, when it gets accepted what gets updated? More specifically, will it get added to my yt when I type yt update?

On Tue, Jan 28, 2014 at 3:16 PM, Nathan Goldbaum nathan12343@gmail.com...wrote:

...

It should be working. You're actually directly manipulating the matplotlib axes object so this has nothing to do with what has or hasn't been implemented in yt.

It looks like the issue is actually due to an oversight in the implementation of PhasePlot._setup_plots().

I've fixed it in my local copy by doing the following:

self._plot_valid = True

def save(self, name=None, mpl_kwargs=None): r"""

This is in yt 3.0dev, so your line numbers may be slightly different if you're running the yt 2.6.1 release.

Let me know if that works for you and I'll open a PR for this patch.

-Nathan

On Tue, Jan 28, 2014 at 11:55 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi Nathan,

Thanks! I am no longer getting a Key Error, but the commands are simply being ignored. Has this axis functionality been added to PhasePlot?

On Tue, Jan 28, 2014 at 1:00 PM, Nathan Goldbaum nathan12343@gmail.com... wrote: >

Hi Stephanie,

Phase plots are keyed with the z axis name. Try:

ax = plot.plots['CellMassMsun'].axes

-Nathan

On Tue, Jan 28, 2014 at 7:09 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi John (and all users!),

http://yt-project.org/docs/dev/cookbook/simple_plots.html#showing-and-hiding... ,

plot =

PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=13)#,x_bounds=[3e-28,5e-23],y_bounds=[-7e7,1.2e8])

plot.set_log("Density",True) plot.set_log("z-velocity",False) plot.set_zlim("CellMassMsun",1e4,1e9) plot.set_figure_size(3)

ax = plot.plots['z-velocity'].axes ax.set_ylabel(r'z-velocity (10$8$ cm/s)') for label in ax.xaxis.get_ticklabels(): label.set_rotation(45)

plot.save()

but get an error message:

ax = plot.plots['z-velocity'].axes KeyError: 'z-velocity'

I get the same error if I use 'Density' on that line instead.

Thanks in advance,

Stephanie

On Mon, Jan 27, 2014 at 11:31 AM, John ZuHone jzuhone@gmail.com... wrote: >

Stephanie,

So you don't have to wait for me to finish this, as a workaround/hack you can do this:

pf.field_info["Density"].take_log=True

which should get you the result you want.

Best,

John

On Jan 26, 2014, at 3:38 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Sweet! Thanks! (I really need to update more often and see what new cool things I can do...)

Stephanie

On Sun, Jan 26, 2014 at 3:34 PM, John ZuHone jzuhone@gmail.com... wrote: >

Hi Stephanie,

Ah yes, this is a problem I encountered just on Friday. We haven't set up PhasePlot or ProfilePlot to allow you to choose what scaling the plot is in.

Since I need it too, it was already on my todo list. So I'll do it tomorrow.

Best,

John

On Jan 26, 2014, at 3:32 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi John,

Ah, okay! Updating my yt made it work. yt version 2.7-dev.

EXCEPT that I can't get it to plot the Density on the x-axis in log space!

alld = pf.h.all_data()

tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"])

plot =

Any more advice? Thanks!

Stephanie

On Sun, Jan 26, 2014 at 10:44 AM, John ZuHone jzuhone@gmail.com... wrote: >

> Hi Stephanie, > > What is your version of yt? PhasePlot is 2.6 and later. > > Best, > > John > > On Jan 26, 2014, at 10:42 AM, Stephanie Tonnesen stonnes@gmail.com... > wrote: > > Hi all, > > Just as a quick update, I tried to change to using > > plot = > > PhasePlot(tracerp25,"Density","z-velocity",["CellMassSolar"],weight=None) > plot.save() > > and got an error: name 'PhasePlot' is not defined. > > Thanks, > > Stephanie > > > On Fri, Jan 24, 2014 at 3:47 PM, Stephanie Tonnesen > stonnes@gmail.com... > wrote: >> >> Hi all, >> >> I am trying to make my phase plots smaller so they can fit more >> nicely >> into a paper. Alternatively, I would be fine with upping the font >> size so >> when I shrink them you can read the axes. I found advise on how to >> do this >> for slices, but not for phase_objects. >> >> pc = PlotCollection(pf) >> >> tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", >> "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < 1.2"]) >> >> >> >> pc.add_phase_object(tracerp25,["Density","z-velocity","CellMassSolar"],weight=None,x_bins=50,y_bins=50,y_bounds >> = [-4e7,8e7],x_bounds=[5e-28,5e-23],x_log=True,ylog=False) >> >> Any help is much appreciated! >> >> Thanks, >> >> Stephanie > > > __ > yt-users mailing list > yt-users@lists.spacepope.org > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > > > > ___ > yt-users mailing list > yt-users@lists.spacepope.org > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >

yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org...

Nathan Goldbaum

11:35 p.m.

I'll be PRing into 2.7dev, so no worries - my working copy just happened to be 3.0dev when I saw your e-mail.

Once my patch is accepted, you'll probably need to revert the manual change you made:

$ hg revert --all

And then update:

$ yt update

If you didn't revert the change, yt would print instructions on how to update manually (to account for the local changes in your copy).

I'll reply to this thread once the PR is accepted.

-Nathan

On Tue, Jan 28, 2014 at 12:28 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

...

On Tue, Jan 28, 2014 at 3:16 PM, Nathan Goldbaum nathan12343@gmail.com... wrote: >

It should be working. You're actually directly manipulating the matplotlib axes object so this has nothing to do with what has or hasn't been implemented in yt.

It looks like the issue is actually due to an oversight in the implementation of PhasePlot._setup_plots().

I've fixed it in my local copy by doing the following:

self._plot_valid = True

def save(self, name=None, mpl_kwargs=None): r"""

This is in yt 3.0dev, so your line numbers may be slightly different if you're running the yt 2.6.1 release.

Let me know if that works for you and I'll open a PR for this patch.

-Nathan

On Tue, Jan 28, 2014 at 11:55 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi Nathan,

Thanks! I am no longer getting a Key Error, but the commands are simply being ignored. Has this axis functionality been added to PhasePlot?

On Tue, Jan 28, 2014 at 1:00 PM, Nathan Goldbaum nathan12343@gmail.com... wrote: >

Hi Stephanie,

Phase plots are keyed with the z axis name. Try:

ax = plot.plots['CellMassMsun'].axes

-Nathan

On Tue, Jan 28, 2014 at 7:09 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi John (and all users!),

http://yt-project.org/docs/dev/cookbook/simple_plots.html#showing-and-hiding...,

plot =

PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=13)#,x_bounds=[3e-28,5e-23],y_bounds=[-7e7,1.2e8])

plot.set_log("Density",True) plot.set_log("z-velocity",False) plot.set_zlim("CellMassMsun",1e4,1e9) plot.set_figure_size(3)

ax = plot.plots['z-velocity'].axes ax.set_ylabel(r'z-velocity (10$8$ cm/s)') for label in ax.xaxis.get_ticklabels(): label.set_rotation(45)

plot.save()

but get an error message:

ax = plot.plots['z-velocity'].axes KeyError: 'z-velocity'

I get the same error if I use 'Density' on that line instead.

Thanks in advance,

Stephanie

On Mon, Jan 27, 2014 at 11:31 AM, John ZuHone jzuhone@gmail.com... wrote: >

Stephanie,

So you don't have to wait for me to finish this, as a workaround/hack you can do this:

pf.field_info["Density"].take_log=True

which should get you the result you want.

Best,

John

On Jan 26, 2014, at 3:38 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Sweet! Thanks! (I really need to update more often and see what new cool things I can do...)

Stephanie

On Sun, Jan 26, 2014 at 3:34 PM, John ZuHone jzuhone@gmail.com... wrote: >

> Hi Stephanie, > > Ah yes, this is a problem I encountered just on Friday. We haven't > set > up > PhasePlot or ProfilePlot to allow you to choose what scaling the > plot > is in. > > Since I need it too, it was already on my todo list. So I'll do it > tomorrow. > > Best, > > John > > On Jan 26, 2014, at 3:32 PM, Stephanie Tonnesen stonnes@gmail.com... > wrote: > > Hi John, > > Ah, okay! Updating my yt made it work. yt version 2.7-dev. > > EXCEPT that I can't get it to plot the Density on the x-axis in log > space! > > alld = pf.h.all_data() > > tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", > "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < > 1.2"]) > > plot = > > > PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=30) > plot.set_log("Density",True) > plot.set_log("z-velocity",False) > plot.set_zlim("CellMassMsun",1e3,1e9) > plot.save() > > Any more advice? Thanks! > > Stephanie > > > On Sun, Jan 26, 2014 at 10:44 AM, John ZuHone jzuhone@gmail.com... > wrote: >> >> Hi Stephanie, >> >> What is your version of yt? PhasePlot is 2.6 and later. >> >> Best, >> >> John >> >> On Jan 26, 2014, at 10:42 AM, Stephanie Tonnesen >> stonnes@gmail.com... >> wrote: >> >> Hi all, >> >> Just as a quick update, I tried to change to using >> >> plot = >> >> >> PhasePlot(tracerp25,"Density","z-velocity",["CellMassSolar"],weight=None) >> plot.save() >> >> and got an error: name 'PhasePlot' is not defined. >> >> Thanks, >> >> Stephanie >> >> >> On Fri, Jan 24, 2014 at 3:47 PM, Stephanie Tonnesen >> stonnes@gmail.com... >> wrote: >>> >>> Hi all, >>> >>> I am trying to make my phase plots smaller so they can fit more >>> nicely >>> into a paper. Alternatively, I would be fine with upping the >>> font >>> size so >>> when I shrink them you can read the axes. I found advise on how >>> to >>> do this >>> for slices, but not for phase_objects. >>> >>> pc = PlotCollection(pf) >>> >>> tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", >>> "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < >>> 1.2"]) >>> >>> >>> >>> >>> pc.add_phase_object(tracerp25,["Density","z-velocity","CellMassSolar"],weight=None,x_bins=50,y_bins=50,y_bounds >>> = [-4e7,8e7],x_bounds=[5e-28,5e-23],x_log=True,ylog=False) >>> >>> Any help is much appreciated! >>> >>> Thanks, >>> >>> Stephanie >> >> >> __ >> yt-users mailing list >> yt-users@lists.spacepope.org >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >> >> >> >> ___ >> yt-users mailing list >> yt-users@lists.spacepope.org >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >> > > ___ > yt-users mailing list > yt-users@lists.spacepope.org > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > > > > ___ > yt-users mailing list > yt-users@lists.spacepope.org > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >

yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org...

Nathan Goldbaum

11:47 p.m.

PR has been merged: https://bitbucket.org/yt_analysis/yt/pull-request/696/fixing-an-issue-with-_...

Thanks, Matt!

On Tue, Jan 28, 2014 at 12:35 PM, Nathan Goldbaum nathan12343@gmail.com... wrote:

...

I'll be PRing into 2.7dev, so no worries - my working copy just happened to be 3.0dev when I saw your e-mail.

Once my patch is accepted, you'll probably need to revert the manual change you made:

$ hg revert --all

And then update:

$ yt update

If you didn't revert the change, yt would print instructions on how to update manually (to account for the local changes in your copy).

I'll reply to this thread once the PR is accepted.

-Nathan

On Tue, Jan 28, 2014 at 12:28 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

On Tue, Jan 28, 2014 at 3:16 PM, Nathan Goldbaum nathan12343@gmail.com... wrote: >

It should be working. You're actually directly manipulating the matplotlib axes object so this has nothing to do with what has or hasn't been implemented in yt.

It looks like the issue is actually due to an oversight in the implementation of PhasePlot._setup_plots().

I've fixed it in my local copy by doing the following:

self._plot_valid = True

def save(self, name=None, mpl_kwargs=None): r"""

This is in yt 3.0dev, so your line numbers may be slightly different if you're running the yt 2.6.1 release.

Let me know if that works for you and I'll open a PR for this patch.

-Nathan

On Tue, Jan 28, 2014 at 11:55 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi Nathan,

Thanks! I am no longer getting a Key Error, but the commands are simply being ignored. Has this axis functionality been added to PhasePlot?

On Tue, Jan 28, 2014 at 1:00 PM, Nathan Goldbaum nathan12343@gmail.com... wrote: >

Hi Stephanie,

Phase plots are keyed with the z axis name. Try:

ax = plot.plots['CellMassMsun'].axes

-Nathan

On Tue, Jan 28, 2014 at 7:09 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi John (and all users!),

http://yt-project.org/docs/dev/cookbook/simple_plots.html#showing-and-hiding...,

plot =

PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=13)#,x_bounds=[3e-28,5e-23],y_bounds=[-7e7,1.2e8])

plot.set_log("Density",True) plot.set_log("z-velocity",False) plot.set_zlim("CellMassMsun",1e4,1e9) plot.set_figure_size(3)

ax = plot.plots['z-velocity'].axes ax.set_ylabel(r'z-velocity (10$8$ cm/s)') for label in ax.xaxis.get_ticklabels(): label.set_rotation(45)

plot.save()

but get an error message:

ax = plot.plots['z-velocity'].axes KeyError: 'z-velocity'

I get the same error if I use 'Density' on that line instead.

Thanks in advance,

Stephanie

On Mon, Jan 27, 2014 at 11:31 AM, John ZuHone jzuhone@gmail.com... wrote: >

> Stephanie, > > So you don't have to wait for me to finish this, as a > workaround/hack > you > can do this: > > pf.field_info["Density"].take_log=True > > which should get you the result you want. > > Best, > > John > > On Jan 26, 2014, at 3:38 PM, Stephanie Tonnesen stonnes@gmail.com... > wrote: > > Sweet! Thanks! (I really need to update more often and see what > new > cool > things I can do...) > > Stephanie > > > On Sun, Jan 26, 2014 at 3:34 PM, John ZuHone jzuhone@gmail.com... > wrote: >> >> Hi Stephanie, >> >> Ah yes, this is a problem I encountered just on Friday. We haven't >> set >> up >> PhasePlot or ProfilePlot to allow you to choose what scaling the >> plot >> is in. >> >> Since I need it too, it was already on my todo list. So I'll do it >> tomorrow. >> >> Best, >> >> John >> >> On Jan 26, 2014, at 3:32 PM, Stephanie Tonnesen stonnes@gmail.com... >> wrote: >> >> Hi John, >> >> Ah, okay! Updating my yt made it work. yt version 2.7-dev. >> >> EXCEPT that I can't get it to plot the Density on the x-axis in log >> space! >> >> alld = pf.h.all_data() >> >> tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", >> "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < >> 1.2"]) >> >> plot = >> >> >> PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=30) >> plot.set_log("Density",True) >> plot.set_log("z-velocity",False) >> plot.set_zlim("CellMassMsun",1e3,1e9) >> plot.save() >> >> Any more advice? Thanks! >> >> Stephanie >> >> >> On Sun, Jan 26, 2014 at 10:44 AM, John ZuHone jzuhone@gmail.com... >> wrote: >>> >>> Hi Stephanie, >>> >>> What is your version of yt? PhasePlot is 2.6 and later. >>> >>> Best, >>> >>> John >>> >>> On Jan 26, 2014, at 10:42 AM, Stephanie Tonnesen >>> stonnes@gmail.com... >>> wrote: >>> >>> Hi all, >>> >>> Just as a quick update, I tried to change to using >>> >>> plot = >>> >>> >>> PhasePlot(tracerp25,"Density","z-velocity",["CellMassSolar"],weight=None) >>> plot.save() >>> >>> and got an error: name 'PhasePlot' is not defined. >>> >>> Thanks, >>> >>> Stephanie >>> >>> >>> On Fri, Jan 24, 2014 at 3:47 PM, Stephanie Tonnesen >>> stonnes@gmail.com... >>> wrote: >>>> >>>> Hi all, >>>> >>>> I am trying to make my phase plots smaller so they can fit more >>>> nicely >>>> into a paper. Alternatively, I would be fine with upping the >>>> font >>>> size so >>>> when I shrink them you can read the axes. I found advise on how >>>> to >>>> do this >>>> for slices, but not for phase_objects. >>>> >>>> pc = PlotCollection(pf) >>>> >>>> tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", >>>> "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < >>>> 1.2"]) >>>> >>>> >>>> >>>> >>>> pc.add_phase_object(tracerp25,["Density","z-velocity","CellMassSolar"],weight=None,x_bins=50,y_bins=50,y_bounds >>>> = [-4e7,8e7],x_bounds=[5e-28,5e-23],x_log=True,ylog=False) >>>> >>>> Any help is much appreciated! >>>> >>>> Thanks, >>>> >>>> Stephanie >>> >>> >>> __ >>> yt-users mailing list >>> yt-users@lists.spacepope.org >>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >>> >>> >>> >>> ___ >>> yt-users mailing list >>> yt-users@lists.spacepope.org >>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >>> >> >> ___ >> yt-users mailing list >> yt-users@lists.spacepope.org >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >> >> >> >> ___ >> yt-users mailing list >> yt-users@lists.spacepope.org >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >> > > ___ > yt-users mailing list > yt-users@lists.spacepope.org > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > > > > ___ > yt-users mailing list > yt-users@lists.spacepope.org > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >

yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org...

Latif

15 Apr 15 Apr

7:16 p.m.

Hi all, I am still having the same problem which Stephanie pointed out. Label setting is not working with the following version of YT. Any ideas what is going wrong here?

Version = 2.7-dev Changeset = c03ad444c015 Thanks in advance, Cheers Latif

On Tue, Jan 28, 2014 at 9:47 PM, Nathan Goldbaum nathan12343@gmail.com...wrote:

...

PR has been merged:

https://bitbucket.org/yt_analysis/yt/pull-request/696/fixing-an-issue-with-_...

Thanks, Matt!

On Tue, Jan 28, 2014 at 12:35 PM, Nathan Goldbaum nathan12343@gmail.com... wrote:

I'll be PRing into 2.7dev, so no worries - my working copy just happened to be 3.0dev when I saw your e-mail.

Once my patch is accepted, you'll probably need to revert the manual change you made:

$ hg revert --all

And then update:

$ yt update

If you didn't revert the change, yt would print instructions on how to update manually (to account for the local changes in your copy).

I'll reply to this thread once the PR is accepted.

-Nathan

On Tue, Jan 28, 2014 at 12:28 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

On Tue, Jan 28, 2014 at 3:16 PM, Nathan Goldbaum <nathan12343@gmail.com

wrote: >

It should be working. You're actually directly manipulating the matplotlib axes object so this has nothing to do with what has or hasn't been implemented in yt.

It looks like the issue is actually due to an oversight in the implementation of PhasePlot._setup_plots().

I've fixed it in my local copy by doing the following:

self._plot_valid = True

def save(self, name=None, mpl_kwargs=None): r"""

This is in yt 3.0dev, so your line numbers may be slightly different if you're running the yt 2.6.1 release.

Let me know if that works for you and I'll open a PR for this patch.

-Nathan

On Tue, Jan 28, 2014 at 11:55 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi Nathan,

Thanks! I am no longer getting a Key Error, but the commands are simply being ignored. Has this axis functionality been added to PhasePlot?

On Tue, Jan 28, 2014 at 1:00 PM, Nathan Goldbaum nathan12343@gmail.com... wrote: >

Hi Stephanie,

Phase plots are keyed with the z axis name. Try:

ax = plot.plots['CellMassMsun'].axes

-Nathan

On Tue, Jan 28, 2014 at 7:09 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

> Hi John (and all users!), > > Thanks, this definitely worked! Now I am trying to make my axes look > a > bit > nicer. I would like to change my y-axis label and rotate my x-axis > ticklabels by 45 degrees or only print every other ticklabel. I > tried > to > use the directions from the SlicePlot example, > > > http://yt-project.org/docs/dev/cookbook/simple_plots.html#showing-and-hiding... , > > plot = > > > PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=13)#,x_bounds=[3e-28,5e-23],y_bounds=[-7e7,1.2e8]) > > plot.set_log("Density",True) > plot.set_log("z-velocity",False) > plot.set_zlim("CellMassMsun",1e4,1e9) > plot.set_figure_size(3) > > ax = plot.plots['z-velocity'].axes > ax.set_ylabel(r'z-velocity (10$8$ cm/s)') > for label in ax.xaxis.get_ticklabels(): > label.set_rotation(45) > > plot.save() > > but get an error message: > > ax = plot.plots['z-velocity'].axes > KeyError: 'z-velocity' > > I get the same error if I use 'Density' on that line instead. > > Thanks in advance, > > Stephanie > > > > On Mon, Jan 27, 2014 at 11:31 AM, John ZuHone jzuhone@gmail.com... > wrote: >> >> Stephanie, >> >> So you don't have to wait for me to finish this, as a >> workaround/hack >> you >> can do this: >> >> pf.field_info["Density"].take_log=True >> >> which should get you the result you want. >> >> Best, >> >> John >> >> On Jan 26, 2014, at 3:38 PM, Stephanie Tonnesen stonnes@gmail.com... >> wrote: >> >> Sweet! Thanks! (I really need to update more often and see what >> new >> cool >> things I can do...) >> >> Stephanie >> >> >> On Sun, Jan 26, 2014 at 3:34 PM, John ZuHone jzuhone@gmail.com... >> wrote: >>> >>> Hi Stephanie, >>> >>> Ah yes, this is a problem I encountered just on Friday. We haven't >>> set >>> up >>> PhasePlot or ProfilePlot to allow you to choose what scaling the >>> plot >>> is in. >>> >>> Since I need it too, it was already on my todo list. So I'll do it >>> tomorrow. >>> >>> Best, >>> >>> John >>> >>> On Jan 26, 2014, at 3:32 PM, Stephanie Tonnesen stonnes@gmail.com... >>> wrote: >>> >>> Hi John, >>> >>> Ah, okay! Updating my yt made it work. yt version 2.7-dev. >>> >>> EXCEPT that I can't get it to plot the Density on the x-axis in log >>> space! >>> >>> alld = pf.h.all_data() >>> >>> tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", >>> "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < >>> 1.2"]) >>> >>> plot = >>> >>> >>> PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=30) >>> plot.set_log("Density",True) >>> plot.set_log("z-velocity",False) >>> plot.set_zlim("CellMassMsun",1e3,1e9) >>> plot.save() >>> >>> Any more advice? Thanks! >>> >>> Stephanie >>> >>> >>> On Sun, Jan 26, 2014 at 10:44 AM, John ZuHone jzuhone@gmail.com... >>> wrote: >>>> >>>> Hi Stephanie, >>>> >>>> What is your version of yt? PhasePlot is 2.6 and later. >>>> >>>> Best, >>>> >>>> John >>>> >>>> On Jan 26, 2014, at 10:42 AM, Stephanie Tonnesen >>>> stonnes@gmail.com... >>>> wrote: >>>> >>>> Hi all, >>>> >>>> Just as a quick update, I tried to change to using >>>> >>>> plot = >>>> >>>> >>>> PhasePlot(tracerp25,"Density","z-velocity",["CellMassSolar"],weight=None) >>>> plot.save() >>>> >>>> and got an error: name 'PhasePlot' is not defined. >>>> >>>> Thanks, >>>> >>>> Stephanie >>>> >>>> >>>> On Fri, Jan 24, 2014 at 3:47 PM, Stephanie Tonnesen >>>> stonnes@gmail.com... >>>> wrote: >>>>> >>>>> Hi all, >>>>> >>>>> I am trying to make my phase plots smaller so they can fit more >>>>> nicely >>>>> into a paper. Alternatively, I would be fine with upping the >>>>> font >>>>> size so >>>>> when I shrink them you can read the axes. I found advise on how >>>>> to >>>>> do this >>>>> for slices, but not for phase_objects. >>>>> >>>>> pc = PlotCollection(pf) >>>>> >>>>> tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", >>>>> "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < >>>>> 1.2"]) >>>>> >>>>> >>>>> >>>>> >>>>> pc.add_phase_object(tracerp25,["Density","z-velocity","CellMassSolar"],weight=None,x_bins=50,y_bins=50,y_bounds >>>>> = [-4e7,8e7],x_bounds=[5e-28,5e-23],x_log=True,ylog=False) >>>>> >>>>> Any help is much appreciated! >>>>> >>>>> Thanks, >>>>> >>>>> Stephanie >>>> >>>> >>>> __ >>>> yt-users mailing list >>>> yt-users@lists.spacepope.org >>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >>>> >>>> >>>> >>>> ___ >>>> yt-users mailing list >>>> yt-users@lists.spacepope.org >>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >>>> >>> >>> ___ >>> yt-users mailing list >>> yt-users@lists.spacepope.org >>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >>> >>> >>> >>> ___ >>> yt-users mailing list >>> yt-users@lists.spacepope.org >>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >>> >> >> ___ >> yt-users mailing list >> yt-users@lists.spacepope.org >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >> >> >> >> ___ >> yt-users mailing list >> yt-users@lists.spacepope.org >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >> > > > ___ > yt-users mailing list > yt-users@lists.spacepope.org > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > ___ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org...

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Nathan Goldbaum

7:53 p.m.

Hi Latif,

Can you give a little more detail about the problem you're having. Specifically, can you write a short script that isn't working for you? If you see any traceback errors can you also paste the full traceback?

-Nathan

On Tue, Apr 15, 2014 at 9:16 AM, Latif latifne@gmail.com... wrote:

...

Hi all, I am still having the same problem which Stephanie pointed out. Label setting is not working with the following version of YT. Any ideas what is going wrong here?

Version = 2.7-dev Changeset = c03ad444c015 Thanks in advance, Cheers Latif

On Tue, Jan 28, 2014 at 9:47 PM, Nathan Goldbaum nathan12343@gmail.com...wrote:

PR has been merged:

https://bitbucket.org/yt_analysis/yt/pull-request/696/fixing-an-issue-with-_...

Thanks, Matt!

On Tue, Jan 28, 2014 at 12:35 PM, Nathan Goldbaum nathan12343@gmail.com... wrote:

I'll be PRing into 2.7dev, so no worries - my working copy just happened to be 3.0dev when I saw your e-mail.

Once my patch is accepted, you'll probably need to revert the manual change you made:

$ hg revert --all

And then update:

$ yt update

If you didn't revert the change, yt would print instructions on how to update manually (to account for the local changes in your copy).

I'll reply to this thread once the PR is accepted.

-Nathan

On Tue, Jan 28, 2014 at 12:28 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

On Tue, Jan 28, 2014 at 3:16 PM, Nathan Goldbaum nathan12343@gmail.com... wrote: >

It should be working. You're actually directly manipulating the matplotlib axes object so this has nothing to do with what has or hasn't been implemented in yt.

It looks like the issue is actually due to an oversight in the implementation of PhasePlot._setup_plots().

I've fixed it in my local copy by doing the following:

self._plot_valid = True

def save(self, name=None, mpl_kwargs=None): r"""

This is in yt 3.0dev, so your line numbers may be slightly different if you're running the yt 2.6.1 release.

Let me know if that works for you and I'll open a PR for this patch.

-Nathan

On Tue, Jan 28, 2014 at 11:55 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

Hi Nathan,

Thanks! I am no longer getting a Key Error, but the commands are simply being ignored. Has this axis functionality been added to PhasePlot?

On Tue, Jan 28, 2014 at 1:00 PM, Nathan Goldbaum nathan12343@gmail.com... wrote: >

> Hi Stephanie, > > Phase plots are keyed with the z axis name. Try: > > ax = plot.plots['CellMassMsun'].axes > > -Nathan > > On Tue, Jan 28, 2014 at 7:09 AM, Stephanie Tonnesen stonnes@gmail.com... > wrote: > > Hi John (and all users!), > > > > Thanks, this definitely worked! Now I am trying to make my axes look > > a > > bit > > nicer. I would like to change my y-axis label and rotate my x-axis > > ticklabels by 45 degrees or only print every other ticklabel. I > > tried > > to > > use the directions from the SlicePlot example, > > > > > > http://yt-project.org/docs/dev/cookbook/simple_plots.html#showing-and-hiding... , > > > > plot = > > > > > > PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=13)#,x_bounds=[3e-28,5e-23],y_bounds=[-7e7,1.2e8]) > > > > plot.set_log("Density",True) > > plot.set_log("z-velocity",False) > > plot.set_zlim("CellMassMsun",1e4,1e9) > > plot.set_figure_size(3) > > > > ax = plot.plots['z-velocity'].axes > > ax.set_ylabel(r'z-velocity (10$8$ cm/s)') > > for label in ax.xaxis.get_ticklabels(): > > label.set_rotation(45) > > > > plot.save() > > > > but get an error message: > > > > ax = plot.plots['z-velocity'].axes > > KeyError: 'z-velocity' > > > > I get the same error if I use 'Density' on that line instead. > > > > Thanks in advance, > > > > Stephanie > > > > > > > > On Mon, Jan 27, 2014 at 11:31 AM, John ZuHone jzuhone@gmail.com ... > wrote: > >> > >> Stephanie, > >> > >> So you don't have to wait for me to finish this, as a > >> workaround/hack > >> you > >> can do this: > >> > >> pf.field_info["Density"].take_log=True > >> > >> which should get you the result you want. > >> > >> Best, > >> > >> John > >> > >> On Jan 26, 2014, at 3:38 PM, Stephanie Tonnesen stonnes@gmail.com... > >> wrote: > >> > >> Sweet! Thanks! (I really need to update more often and see what > >> new > >> cool > >> things I can do...) > >> > >> Stephanie > >> > >> > >> On Sun, Jan 26, 2014 at 3:34 PM, John ZuHone jzuhone@gmail.com ... >> wrote: > >>> > >>> Hi Stephanie, > >>> > >>> Ah yes, this is a problem I encountered just on Friday. We haven't > >>> set > >>> up > >>> PhasePlot or ProfilePlot to allow you to choose what scaling the > >>> plot > >>> is in. > >>> > >>> Since I need it too, it was already on my todo list. So I'll do it > >>> tomorrow. > >>> > >>> Best, > >>> > >>> John > >>> > >>> On Jan 26, 2014, at 3:32 PM, Stephanie Tonnesen stonnes@gmail.com... > >>> wrote: > >>> > >>> Hi John, > >>> > >>> Ah, okay! Updating my yt made it work. yt version 2.7-dev. > >>> > >>> EXCEPT that I can't get it to plot the Density on the x-axis in log > >>> space! > >>> > >>> alld = pf.h.all_data() > >>> > >>> tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", > >>> "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < > >>> 1.2"]) > >>> > >>> plot = > >>> > >>> > >>> PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=30) > >>> plot.set_log("Density",True) > >>> plot.set_log("z-velocity",False) > >>> plot.set_zlim("CellMassMsun",1e3,1e9) > >>> plot.save() > >>> > >>> Any more advice? Thanks! > >>> > >>> Stephanie > >>> > >>> > >>> On Sun, Jan 26, 2014 at 10:44 AM, John ZuHone jzuhone@gmail.com... > >>> wrote: > >>>> > >>>> Hi Stephanie, > >>>> > >>>> What is your version of yt? PhasePlot is 2.6 and later. > >>>> > >>>> Best, > >>>> > >>>> John > >>>> > >>>> On Jan 26, 2014, at 10:42 AM, Stephanie Tonnesen > >>>> stonnes@gmail.com... > >>>> wrote: > >>>> > >>>> Hi all, > >>>> > >>>> Just as a quick update, I tried to change to using > >>>> > >>>> plot = > >>>> > >>>> > >>>> PhasePlot(tracerp25,"Density","z-velocity",["CellMassSolar"],weight=None) > >>>> plot.save() > >>>> > >>>> and got an error: name 'PhasePlot' is not defined. > >>>> > >>>> Thanks, > >>>> > >>>> Stephanie > >>>> > >>>> > >>>> On Fri, Jan 24, 2014 at 3:47 PM, Stephanie Tonnesen > >>>> stonnes@gmail.com... > >>>> wrote: > >>>>> > >>>>> Hi all, > >>>>> > >>>>> I am trying to make my phase plots smaller so they can fit more > >>>>> nicely > >>>>> into a paper. Alternatively, I would be fine with upping the > >>>>> font > >>>>> size so > >>>>> when I shrink them you can read the axes. I found advise on how > >>>>> to > >>>>> do this > >>>>> for slices, but not for phase_objects. > >>>>> > >>>>> pc = PlotCollection(pf) > >>>>> > >>>>> tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", > >>>>> "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < > >>>>> 1.2"]) > >>>>> > >>>>> > >>>>> > >>>>> > >>>>> pc.add_phase_object(tracerp25,["Density","z-velocity","CellMassSolar"],weight=None,x_bins=50,y_bins=50,y_bounds > >>>>> = [-4e7,8e7],x_bounds=[5e-28,5e-23],x_log=True,ylog=False) > >>>>> > >>>>> Any help is much appreciated! > >>>>> > >>>>> Thanks, > >>>>> > >>>>> Stephanie > >>>> > >>>> > >>>> __ > >>>> yt-users mailing list > >>>> yt-users@lists.spacepope.org > >>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > >>>> > >>>> > >>>> > >>>> ___ > >>>> yt-users mailing list > >>>> yt-users@lists.spacepope.org > >>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > >>>> > >>> > >>> ___ > >>> yt-users mailing list > >>> yt-users@lists.spacepope.org > >>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > >>> > >>> > >>> > >>> ___ > >>> yt-users mailing list > >>> yt-users@lists.spacepope.org > >>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > >>> > >> > >> ___ > >> yt-users mailing list > >> yt-users@lists.spacepope.org > >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > >> > >> > >> > >> ___ > >> yt-users mailing list > >> yt-users@lists.spacepope.org > >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > >> > > > > > > ___ > > yt-users mailing list > > yt-users@lists.spacepope.org > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > > > ___ > yt-users mailing list > yt-users@lists.spacepope.org > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org...

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Latif

7:58 p.m.

Hi Nathan, Thank you! I am trying to make phase plot but wanted to change the axis labels and fonts etc. It is very simple script and should have worked as I followed the discussion on this thread. My y-axis label command is simply being ignored. Any thoughts on this? plot = PhasePlot(dd, "Density", "Temperature", "CellMassMsun", weight_field=None, fractional=True) ax = plot.plots['CellMassMsun'].axes ax.set_ylabel(r'$\mathrm{Density [g/cm^{3}]}$') plot.reset_plot() plot.save() Cheers Latif

On Tue, Apr 15, 2014 at 6:53 PM, Nathan Goldbaum nathan12343@gmail.com...wrote:

...

Hi Latif,

-Nathan

On Tue, Apr 15, 2014 at 9:16 AM, Latif latifne@gmail.com... wrote:

Hi all, I am still having the same problem which Stephanie pointed out. Label setting is not working with the following version of YT. Any ideas what is going wrong here?

Version = 2.7-dev Changeset = c03ad444c015 Thanks in advance, Cheers Latif

On Tue, Jan 28, 2014 at 9:47 PM, Nathan Goldbaum nathan12343@gmail.com...wrote:

PR has been merged:

https://bitbucket.org/yt_analysis/yt/pull-request/696/fixing-an-issue-with-_...

Thanks, Matt!

On Tue, Jan 28, 2014 at 12:35 PM, Nathan Goldbaum nathan12343@gmail.com... wrote:

I'll be PRing into 2.7dev, so no worries - my working copy just happened to be 3.0dev when I saw your e-mail.

Once my patch is accepted, you'll probably need to revert the manual change you made:

$ hg revert --all

And then update:

$ yt update

If you didn't revert the change, yt would print instructions on how to update manually (to account for the local changes in your copy).

I'll reply to this thread once the PR is accepted.

-Nathan

On Tue, Jan 28, 2014 at 12:28 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

On Tue, Jan 28, 2014 at 3:16 PM, Nathan Goldbaum nathan12343@gmail.com... wrote: >

It should be working. You're actually directly manipulating the matplotlib axes object so this has nothing to do with what has or hasn't been implemented in yt.

It looks like the issue is actually due to an oversight in the implementation of PhasePlot._setup_plots().

I've fixed it in my local copy by doing the following:

self._plot_valid = True

def save(self, name=None, mpl_kwargs=None): r"""

This is in yt 3.0dev, so your line numbers may be slightly different if you're running the yt 2.6.1 release.

Let me know if that works for you and I'll open a PR for this patch.

-Nathan

On Tue, Jan 28, 2014 at 11:55 AM, Stephanie Tonnesen stonnes@gmail.com... wrote:

> Hi Nathan, > > Thanks! I am no longer getting a Key Error, but the commands are simply > being ignored. Has this axis functionality been added to PhasePlot? > > > > > On Tue, Jan 28, 2014 at 1:00 PM, Nathan Goldbaum nathan12343@gmail.com... > wrote: >> >> Hi Stephanie, >> >> Phase plots are keyed with the z axis name. Try: >> >> ax = plot.plots['CellMassMsun'].axes >> >> -Nathan >> >> On Tue, Jan 28, 2014 at 7:09 AM, Stephanie Tonnesen stonnes@gmail.com... >> wrote: >> > Hi John (and all users!), >> > >> > Thanks, this definitely worked! Now I am trying to make my axes look >> > a >> > bit >> > nicer. I would like to change my y-axis label and rotate my x-axis >> > ticklabels by 45 degrees or only print every other ticklabel. I >> > tried >> > to >> > use the directions from the SlicePlot example, >> > >> > >> > http://yt-project.org/docs/dev/cookbook/simple_plots.html#showing-and-hiding... , >> > >> > plot = >> > >> > >> > PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=13)#,x_bounds=[3e-28,5e-23],y_bounds=[-7e7,1.2e8]) >> > >> > plot.set_log("Density",True) >> > plot.set_log("z-velocity",False) >> > plot.set_zlim("CellMassMsun",1e4,1e9) >> > plot.set_figure_size(3) >> > >> > ax = plot.plots['z-velocity'].axes >> > ax.set_ylabel(r'z-velocity (10$8$ cm/s)') >> > for label in ax.xaxis.get_ticklabels(): >> > label.set_rotation(45) >> > >> > plot.save() >> > >> > but get an error message: >> > >> > ax = plot.plots['z-velocity'].axes >> > KeyError: 'z-velocity' >> > >> > I get the same error if I use 'Density' on that line instead. >> > >> > Thanks in advance, >> > >> > Stephanie >> > >> > >> > >> > On Mon, Jan 27, 2014 at 11:31 AM, John ZuHone jzuhone@gmail.com... >> > wrote: >> >> >> >> Stephanie, >> >> >> >> So you don't have to wait for me to finish this, as a >> >> workaround/hack >> >> you >> >> can do this: >> >> >> >> pf.field_info["Density"].take_log=True >> >> >> >> which should get you the result you want. >> >> >> >> Best, >> >> >> >> John >> >> >> >> On Jan 26, 2014, at 3:38 PM, Stephanie Tonnesen stonnes@gmail.com... >> >> wrote: >> >> >> >> Sweet! Thanks! (I really need to update more often and see what >> >> new >> >> cool >> >> things I can do...) >> >> >> >> Stephanie >> >> >> >> >> >> On Sun, Jan 26, 2014 at 3:34 PM, John ZuHone jzuhone@gmail.com... >> >> wrote: >> >>> >> >>> Hi Stephanie, >> >>> >> >>> Ah yes, this is a problem I encountered just on Friday. We haven't >> >>> set >> >>> up >> >>> PhasePlot or ProfilePlot to allow you to choose what scaling the >> >>> plot >> >>> is in. >> >>> >> >>> Since I need it too, it was already on my todo list. So I'll do it >> >>> tomorrow. >> >>> >> >>> Best, >> >>> >> >>> John >> >>> >> >>> On Jan 26, 2014, at 3:32 PM, Stephanie Tonnesen stonnes@gmail.com... >> >>> wrote: >> >>> >> >>> Hi John, >> >>> >> >>> Ah, okay! Updating my yt made it work. yt version 2.7-dev. >> >>> >> >>> EXCEPT that I can't get it to plot the Density on the x-axis in log >> >>> space! >> >>> >> >>> alld = pf.h.all_data() >> >>> >> >>> tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", >> >>> "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < >> >>> 1.2"]) >> >>> >> >>> plot = >> >>> >> >>> >> >>> PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=30) >> >>> plot.set_log("Density",True) >> >>> plot.set_log("z-velocity",False) >> >>> plot.set_zlim("CellMassMsun",1e3,1e9) >> >>> plot.save() >> >>> >> >>> Any more advice? Thanks! >> >>> >> >>> Stephanie >> >>> >> >>> >> >>> On Sun, Jan 26, 2014 at 10:44 AM, John ZuHone jzuhone@gmail.com... >> >>> wrote: >> >>>> >> >>>> Hi Stephanie, >> >>>> >> >>>> What is your version of yt? PhasePlot is 2.6 and later. >> >>>> >> >>>> Best, >> >>>> >> >>>> John >> >>>> >> >>>> On Jan 26, 2014, at 10:42 AM, Stephanie Tonnesen >> >>>> stonnes@gmail.com... >> >>>> wrote: >> >>>> >> >>>> Hi all, >> >>>> >> >>>> Just as a quick update, I tried to change to using >> >>>> >> >>>> plot = >> >>>> >> >>>> >> >>>> PhasePlot(tracerp25,"Density","z-velocity",["CellMassSolar"],weight=None) >> >>>> plot.save() >> >>>> >> >>>> and got an error: name 'PhasePlot' is not defined. >> >>>> >> >>>> Thanks, >> >>>> >> >>>> Stephanie >> >>>> >> >>>> >> >>>> On Fri, Jan 24, 2014 at 3:47 PM, Stephanie Tonnesen >> >>>> stonnes@gmail.com... >> >>>> wrote: >> >>>>> >> >>>>> Hi all, >> >>>>> >> >>>>> I am trying to make my phase plots smaller so they can fit more >> >>>>> nicely >> >>>>> into a paper. Alternatively, I would be fine with upping the >> >>>>> font >> >>>>> size so >> >>>>> when I shrink them you can read the axes. I found advise on how >> >>>>> to >> >>>>> do this >> >>>>> for slices, but not for phase_objects. >> >>>>> >> >>>>> pc = PlotCollection(pf) >> >>>>> >> >>>>> tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", >> >>>>> "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < >> >>>>> 1.2"]) >> >>>>> >> >>>>> >> >>>>> >> >>>>> >> >>>>> pc.add_phase_object(tracerp25,["Density","z-velocity","CellMassSolar"],weight=None,x_bins=50,y_bins=50,y_bounds >> >>>>> = [-4e7,8e7],x_bounds=[5e-28,5e-23],x_log=True,ylog=False) >> >>>>> >> >>>>> Any help is much appreciated! >> >>>>> >> >>>>> Thanks, >> >>>>> >> >>>>> Stephanie >> >>>> >> >>>> >> >>>> __ >> >>>> yt-users mailing list >> >>>> yt-users@lists.spacepope.org >> >>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >> >>>> >> >>>> >> >>>> >> >>>> ___ >> >>>> yt-users mailing list >> >>>> yt-users@lists.spacepope.org >> >>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >> >>>> >> >>> >> >>> ___ >> >>> yt-users mailing list >> >>> yt-users@lists.spacepope.org >> >>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >> >>> >> >>> >> >>> >> >>> ___ >> >>> yt-users mailing list >> >>> yt-users@lists.spacepope.org >> >>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >> >>> >> >> >> >> ___ >> >> yt-users mailing list >> >> yt-users@lists.spacepope.org >> >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >> >> >> >> >> >> >> >> ___ >> >> yt-users mailing list >> >> yt-users@lists.spacepope.org >> >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >> >> >> > >> > >> > ___ >> > yt-users mailing list >> > yt-users@lists.spacepope.org >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... >> > >> ___ >> yt-users mailing list >> yt-users@lists.spacepope.org >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > > > > ___ > yt-users mailing list > yt-users@lists.spacepope.org > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > ___ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org...

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Latif

9:25 p.m.

Just figured out that plot.reset_plot() option was stopping me from overwriting the labels.

On Tue, Apr 15, 2014 at 6:58 PM, Latif latifne@gmail.com... wrote:

...

ax = plot.plots['CellMassMsun'].axes ax.set_ylabel(r'$\mathrm{Density [g/cm^{3}]}$') plot.reset_plot() plot.save() Cheers Latif

On Tue, Apr 15, 2014 at 6:53 PM, Nathan Goldbaum nathan12343@gmail.com...wrote:

Hi Latif,

-Nathan

On Tue, Apr 15, 2014 at 9:16 AM, Latif latifne@gmail.com... wrote:

Hi all, I am still having the same problem which Stephanie pointed out. Label setting is not working with the following version of YT. Any ideas what is going wrong here?

Version = 2.7-dev Changeset = c03ad444c015 Thanks in advance, Cheers Latif

On Tue, Jan 28, 2014 at 9:47 PM, Nathan Goldbaum nathan12343@gmail.com...wrote:

PR has been merged:

https://bitbucket.org/yt_analysis/yt/pull-request/696/fixing-an-issue-with-_...

Thanks, Matt!

On Tue, Jan 28, 2014 at 12:35 PM, Nathan Goldbaum nathan12343@gmail.com... wrote:

I'll be PRing into 2.7dev, so no worries - my working copy just happened to be 3.0dev when I saw your e-mail.

Once my patch is accepted, you'll probably need to revert the manual change you made:

$ hg revert --all

And then update:

$ yt update

If you didn't revert the change, yt would print instructions on how to update manually (to account for the local changes in your copy).

I'll reply to this thread once the PR is accepted.

-Nathan

On Tue, Jan 28, 2014 at 12:28 PM, Stephanie Tonnesen stonnes@gmail.com... wrote:

On Tue, Jan 28, 2014 at 3:16 PM, Nathan Goldbaum nathan12343@gmail.com... wrote: >

> It should be working. You're actually directly manipulating the > matplotlib axes object so this has nothing to do with what has or > hasn't been implemented in yt. > > It looks like the issue is actually due to an oversight in the > implementation of PhasePlot._setup_plots(). > > I've fixed it in my local copy by doing the following: > > diff -r ff7f35e02f27 yt/visualization/profile_plotter.py > --- a/yt/visualization/profile_plotter.py Mon Jan 27 11:52:18 2014 > -0500 > +++ b/yt/visualization/profile_plotter.py Tue Jan 28 12:13:42 2014 > -0800 > @@ -653,6 +653,7 @@ > [ax.xaxis.label, ax.yaxis.label, cbax.yaxis.label] > for label in labels: > label.set_color(self._font_color) > + self._plot_valid = True > > def save(self, name=None, mpl_kwargs=None): > r""" > > > This is in yt 3.0dev, so your line numbers may be slightly different > if you're running the yt 2.6.1 release. > > Let me know if that works for you and I'll open a PR for this patch. > > -Nathan > > > > > On Tue, Jan 28, 2014 at 11:55 AM, Stephanie Tonnesen stonnes@gmail.com... > wrote: > > Hi Nathan, > > > > Thanks! I am no longer getting a Key Error, but the commands are simply > > being ignored. Has this axis functionality been added to PhasePlot? > > > > > > > > > > On Tue, Jan 28, 2014 at 1:00 PM, Nathan Goldbaum nathan12343@gmail.com... > > wrote: > >> > >> Hi Stephanie, > >> > >> Phase plots are keyed with the z axis name. Try: > >> > >> ax = plot.plots['CellMassMsun'].axes > >> > >> -Nathan > >> > >> On Tue, Jan 28, 2014 at 7:09 AM, Stephanie Tonnesen stonnes@gmail.com... > >> wrote: > >> > Hi John (and all users!), > >> > > >> > Thanks, this definitely worked! Now I am trying to make my axes look > >> > a > >> > bit > >> > nicer. I would like to change my y-axis label and rotate my x-axis > >> > ticklabels by 45 degrees or only print every other ticklabel. I > >> > tried > >> > to > >> > use the directions from the SlicePlot example, > >> > > >> > > >> > http://yt-project.org/docs/dev/cookbook/simple_plots.html#showing-and-hiding... , > >> > > >> > plot = > >> > > >> > > >> > PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=13)#,x_bounds=[3e-28,5e-23],y_bounds=[-7e7,1.2e8]) > >> > > >> > plot.set_log("Density",True) > >> > plot.set_log("z-velocity",False) > >> > plot.set_zlim("CellMassMsun",1e4,1e9) > >> > plot.set_figure_size(3) > >> > > >> > ax = plot.plots['z-velocity'].axes > >> > ax.set_ylabel(r'z-velocity (10$8$ cm/s)') > >> > for label in ax.xaxis.get_ticklabels(): > >> > label.set_rotation(45) > >> > > >> > plot.save() > >> > > >> > but get an error message: > >> > > >> > ax = plot.plots['z-velocity'].axes > >> > KeyError: 'z-velocity' > >> > > >> > I get the same error if I use 'Density' on that line instead. > >> > > >> > Thanks in advance, > >> > > >> > Stephanie > >> > > >> > > >> > > >> > On Mon, Jan 27, 2014 at 11:31 AM, John ZuHone jzuhone@gmail.com... > >> > wrote: > >> >> > >> >> Stephanie, > >> >> > >> >> So you don't have to wait for me to finish this, as a > >> >> workaround/hack > >> >> you > >> >> can do this: > >> >> > >> >> pf.field_info["Density"].take_log=True > >> >> > >> >> which should get you the result you want. > >> >> > >> >> Best, > >> >> > >> >> John > >> >> > >> >> On Jan 26, 2014, at 3:38 PM, Stephanie Tonnesen stonnes@gmail.com... > >> >> wrote: > >> >> > >> >> Sweet! Thanks! (I really need to update more often and see what > >> >> new > >> >> cool > >> >> things I can do...) > >> >> > >> >> Stephanie > >> >> > >> >> > >> >> On Sun, Jan 26, 2014 at 3:34 PM, John ZuHone jzuhone@gmail.com... > >> >> wrote: > >> >>> > >> >>> Hi Stephanie, > >> >>> > >> >>> Ah yes, this is a problem I encountered just on Friday. We haven't > >> >>> set > >> >>> up > >> >>> PhasePlot or ProfilePlot to allow you to choose what scaling the > >> >>> plot > >> >>> is in. > >> >>> > >> >>> Since I need it too, it was already on my todo list. So I'll do it > >> >>> tomorrow. > >> >>> > >> >>> Best, > >> >>> > >> >>> John > >> >>> > >> >>> On Jan 26, 2014, at 3:32 PM, Stephanie Tonnesen stonnes@gmail.com... > >> >>> wrote: > >> >>> > >> >>> Hi John, > >> >>> > >> >>> Ah, okay! Updating my yt made it work. yt version 2.7-dev. > >> >>> > >> >>> EXCEPT that I can't get it to plot the Density on the x-axis in log > >> >>> space! > >> >>> > >> >>> alld = pf.h.all_data() > >> >>> > >> >>> tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", > >> >>> "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < > >> >>> 1.2"]) > >> >>> > >> >>> plot = > >> >>> > >> >>> > >> >>> PhasePlot(tracerp25,"Density","z-velocity",["CellMassMsun"],weight_field=None,fontsize=30) > >> >>> plot.set_log("Density",True) > >> >>> plot.set_log("z-velocity",False) > >> >>> plot.set_zlim("CellMassMsun",1e3,1e9) > >> >>> plot.save() > >> >>> > >> >>> Any more advice? Thanks! > >> >>> > >> >>> Stephanie > >> >>> > >> >>> > >> >>> On Sun, Jan 26, 2014 at 10:44 AM, John ZuHone jzuhone@gmail.com... > >> >>> wrote: > >> >>>> > >> >>>> Hi Stephanie, > >> >>>> > >> >>>> What is your version of yt? PhasePlot is 2.6 and later. > >> >>>> > >> >>>> Best, > >> >>>> > >> >>>> John > >> >>>> > >> >>>> On Jan 26, 2014, at 10:42 AM, Stephanie Tonnesen > >> >>>> stonnes@gmail.com... > >> >>>> wrote: > >> >>>> > >> >>>> Hi all, > >> >>>> > >> >>>> Just as a quick update, I tried to change to using > >> >>>> > >> >>>> plot = > >> >>>> > >> >>>> > >> >>>> PhasePlot(tracerp25,"Density","z-velocity",["CellMassSolar"],weight=None) > >> >>>> plot.save() > >> >>>> > >> >>>> and got an error: name 'PhasePlot' is not defined. > >> >>>> > >> >>>> Thanks, > >> >>>> > >> >>>> Stephanie > >> >>>> > >> >>>> > >> >>>> On Fri, Jan 24, 2014 at 3:47 PM, Stephanie Tonnesen > >> >>>> stonnes@gmail.com... > >> >>>> wrote: > >> >>>>> > >> >>>>> Hi all, > >> >>>>> > >> >>>>> I am trying to make my phase plots smaller so they can fit more > >> >>>>> nicely > >> >>>>> into a paper. Alternatively, I would be fine with upping the > >> >>>>> font > >> >>>>> size so > >> >>>>> when I shrink them you can read the axes. I found advise on how > >> >>>>> to > >> >>>>> do this > >> >>>>> for slices, but not for phase_objects. > >> >>>>> > >> >>>>> pc = PlotCollection(pf) > >> >>>>> > >> >>>>> tracerp25 = alld.cut_region(["grid['specific_scalar[0]'] > 0.5", > >> >>>>> "grid['z'] < 0.192","grid['z'] > -0.192","grid['cyl_RCode'] < > >> >>>>> 1.2"]) > >> >>>>> > >> >>>>> > >> >>>>> > >> >>>>> > >> >>>>> pc.add_phase_object(tracerp25,["Density","z-velocity","CellMassSolar"],weight=None,x_bins=50,y_bins=50,y_bounds > >> >>>>> = [-4e7,8e7],x_bounds=[5e-28,5e-23],x_log=True,ylog=False) > >> >>>>> > >> >>>>> Any help is much appreciated! > >> >>>>> > >> >>>>> Thanks, > >> >>>>> > >> >>>>> Stephanie > >> >>>> > >> >>>> > >> >>>> __ > >> >>>> yt-users mailing list > >> >>>> yt-users@lists.spacepope.org > >> >>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > >> >>>> > >> >>>> > >> >>>> > >> >>>> ___ > >> >>>> yt-users mailing list > >> >>>> yt-users@lists.spacepope.org > >> >>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > >> >>>> > >> >>> > >> >>> ___ > >> >>> yt-users mailing list > >> >>> yt-users@lists.spacepope.org > >> >>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > >> >>> > >> >>> > >> >>> > >> >>> ___ > >> >>> yt-users mailing list > >> >>> yt-users@lists.spacepope.org > >> >>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > >> >>> > >> >> > >> >> ___ > >> >> yt-users mailing list > >> >> yt-users@lists.spacepope.org > >> >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > >> >> > >> >> > >> >> > >> >> ___ > >> >> yt-users mailing list > >> >> yt-users@lists.spacepope.org > >> >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > >> >> > >> > > >> > > >> > ___ > >> > yt-users mailing list > >> > yt-users@lists.spacepope.org > >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > >> > > >> ___ > >> yt-users mailing list > >> yt-users@lists.spacepope.org > >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > > > > > > > > ___ > > yt-users mailing list > > yt-users@lists.spacepope.org > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org... > > > ___ > yt-users mailing list > yt-users@lists.spacepope.org > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org...

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change size of phase plot