hierarchy.io.pop, projection
Hi, Everybody! In order to ensure all my units are being done correctly, I have a field 'TE' that forces 'TotalEnergy' to be read off disk, like this: def _TE(field,data): return data.hierarchy.io.pop(data, 'TotalEnergy') lagos.add_field("TE", function=_TE, validators=[lagos.ValidateGridType()]) This lets me circumvent the assumptions that yt makes on a field by that name, specifically unit conversion. However, I can't seem to project it. I get the error, below. Does anyone have any ideas of either different ways to do this, or ways around the projection error? Thanks, d. Traceback (most recent call last): File "<stdin>", line 1, in <module> File "tmp.py", line 9, in <module> mp.plot() File "/home/dccollin/yt/uber.py", line 398, in plot fig = self.add_plots(field,axis,FirstOne) File "/home/dccollin/yt/uber.py", line 676, in add_plots **extra_args) File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/raven/plot_collection.py", line 719, in add_projection **field_parameters) File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/BaseDataTypes.py", line 1205, in __init__ self._refresh_data() File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/BaseDataTypes.py", line 237, in _refresh_data self.get_data() File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/BaseDataTypes.py", line 1380, in get_data self._get_dependencies(fields), self.hierarchy.io) File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/ParallelTools.py", line 1438, in _get_dependencies deps += ensure_list(fi[field].get_dependencies(pf=self.pf).requested) File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/field_info_container.py", line 297, in get_dependencies self(e) File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/field_info_container.py", line 318, in __call__ dd = self._function(self, data) File "xtra_fields.py", line 161, in _TE dataset = data.hierarchy.io.pop(data, 'TotalEnergy') AttributeError: 'fake_io' object has no attribute 'pop' -- Sent from my Stone Tablet and carried by my Pterodactyl.
Hi Dave, This is the field detection mechanism, to determine if a field is available to be used. It's how the list derived_field_list is constructed upon hierarchy instantiation, and it's how dependencies are calculated. If you look in the definition of the FieldDetector object (yt/data_objects/field_info_container) you can see where the IO mechanism is mocked up in the locally-defined class (which violates the yt style guide, I see now) fake_hierarchy and its nested fake_io. Add the pop method to the fake_io object, identical to _read_data_set. Go ahead and push the changes when you've made them, this is a valuable change. Best, Matt On Mon, Oct 25, 2010 at 3:20 PM, david collins <antpuncher@gmail.com> wrote:
Hi, Everybody!
In order to ensure all my units are being done correctly, I have a field 'TE' that forces 'TotalEnergy' to be read off disk, like this:
def _TE(field,data): return data.hierarchy.io.pop(data, 'TotalEnergy')
lagos.add_field("TE", function=_TE, validators=[lagos.ValidateGridType()])
This lets me circumvent the assumptions that yt makes on a field by that name, specifically unit conversion. However, I can't seem to project it. I get the error, below. Does anyone have any ideas of either different ways to do this, or ways around the projection error?
Thanks, d.
Traceback (most recent call last): File "<stdin>", line 1, in <module> File "tmp.py", line 9, in <module> mp.plot() File "/home/dccollin/yt/uber.py", line 398, in plot fig = self.add_plots(field,axis,FirstOne) File "/home/dccollin/yt/uber.py", line 676, in add_plots **extra_args) File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/raven/plot_collection.py", line 719, in add_projection **field_parameters) File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/BaseDataTypes.py", line 1205, in __init__ self._refresh_data() File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/BaseDataTypes.py", line 237, in _refresh_data self.get_data() File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/BaseDataTypes.py", line 1380, in get_data self._get_dependencies(fields), self.hierarchy.io) File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/ParallelTools.py", line 1438, in _get_dependencies deps += ensure_list(fi[field].get_dependencies(pf=self.pf).requested) File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/field_info_container.py", line 297, in get_dependencies self(e) File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/field_info_container.py", line 318, in __call__ dd = self._function(self, data) File "xtra_fields.py", line 161, in _TE dataset = data.hierarchy.io.pop(data, 'TotalEnergy') AttributeError: 'fake_io' object has no attribute 'pop'
-- Sent from my Stone Tablet and carried by my Pterodactyl. _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Awesome, thanks. d. On Mon, Oct 25, 2010 at 3:24 PM, Matthew Turk <matthewturk@gmail.com> wrote:
Hi Dave,
This is the field detection mechanism, to determine if a field is available to be used. It's how the list derived_field_list is constructed upon hierarchy instantiation, and it's how dependencies are calculated.
If you look in the definition of the FieldDetector object (yt/data_objects/field_info_container) you can see where the IO mechanism is mocked up in the locally-defined class (which violates the yt style guide, I see now) fake_hierarchy and its nested fake_io. Add the pop method to the fake_io object, identical to _read_data_set.
Go ahead and push the changes when you've made them, this is a valuable change.
Best,
Matt
On Mon, Oct 25, 2010 at 3:20 PM, david collins <antpuncher@gmail.com> wrote:
Hi, Everybody!
In order to ensure all my units are being done correctly, I have a field 'TE' that forces 'TotalEnergy' to be read off disk, like this:
def _TE(field,data): return data.hierarchy.io.pop(data, 'TotalEnergy')
lagos.add_field("TE", function=_TE, validators=[lagos.ValidateGridType()])
This lets me circumvent the assumptions that yt makes on a field by that name, specifically unit conversion. However, I can't seem to project it. I get the error, below. Does anyone have any ideas of either different ways to do this, or ways around the projection error?
Thanks, d.
Traceback (most recent call last): File "<stdin>", line 1, in <module> File "tmp.py", line 9, in <module> mp.plot() File "/home/dccollin/yt/uber.py", line 398, in plot fig = self.add_plots(field,axis,FirstOne) File "/home/dccollin/yt/uber.py", line 676, in add_plots **extra_args) File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/raven/plot_collection.py", line 719, in add_projection **field_parameters) File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/BaseDataTypes.py", line 1205, in __init__ self._refresh_data() File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/BaseDataTypes.py", line 237, in _refresh_data self.get_data() File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/BaseDataTypes.py", line 1380, in get_data self._get_dependencies(fields), self.hierarchy.io) File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/ParallelTools.py", line 1438, in _get_dependencies deps += ensure_list(fi[field].get_dependencies(pf=self.pf).requested) File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/field_info_container.py", line 297, in get_dependencies self(e) File "/projects/lca-group/local-dev/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/field_info_container.py", line 318, in __call__ dd = self._function(self, data) File "xtra_fields.py", line 161, in _TE dataset = data.hierarchy.io.pop(data, 'TotalEnergy') AttributeError: 'fake_io' object has no attribute 'pop'
-- Sent from my Stone Tablet and carried by my Pterodactyl. _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
-- Sent from my Stone Tablet and carried by my Pterodactyl.
participants (3)
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david collins
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David Collins
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Matthew Turk