Re: [yt-users] installing yt on mac OS bzlib issue
Hi all - Did the archived solution below work for you? I'm trying to install and having exactly the same issue, and this doesn't seem to solve my problem. I'm running OSX 10.5, and my default version of gcc is 4.0.1: % gcc -v Using built-in specs. Target: i686-apple-darwin9 Configured with: /var/tmp/gcc/gcc-5465~16/src/configure --disable-checking -enable-werror --prefix=/usr --mandir=/share/man --enable-languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^.-]*$/s/$/-4.0/ --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/usr/lib --build=i686-apple-darwin9 --with-arch=apple --with-tune=generic --host=i686-apple-darwin9 --target=i686-apple-darwin9 Thread model: posix gcc version 4.0.1 (Apple Inc. build 5465) I've installed gcc-4.2, but it won't take the "-shared" flag. % gcc-4.2 -v Using built-in specs. Target: i686-apple-darwin9 Configured with: ../gcc-4.2.4/configure --prefix=/sw --prefix=/sw/lib/gcc4.2 --mandir=/sw/share/man --infodir=/sw/share/info --enable-languages=c,c++,fortran,objc,java --with-arch=nocona --with-tune=generic --host=i686-apple-darwin9 --with-gmp=/sw --with-libiconv-prefix=/sw --with-system-zlib --x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib --disable-libjava-multilib Thread model: posix gcc version 4.2.4 Using either gcc-4.0.1 or gcc-4.2, I still get a compilation error that it couldn't find main: % make -f Makefile-libbz2_so CFLAGS=-fPIC LDFLAGS=-fPIC PREFIX=/Users/rieth/yt_analysis gcc -shared -Wl,-install_name -Wl,libbz2.so.1.0 -o libbz2.so.1.0.4 blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o Undefined symbols: "_main", referenced from: start in crt1.10.5.o ld: symbol(s) not found collect2: ld returned 1 exit status make: *** [all] Error 1 I'm sure I'm doing something really stupid, but I can't figure out what it is. Can anyone help? (Also, sorry for the cut-and-paste; I couldn't figure out how to reply directly to the archived post.) Thanks, Dave -------------------------------------------------------------------- Matthew Turk wrote: Hi JC, Are you setting CC and CXX to gcc-4.2 and g++-4.2, as the note in the install script mentions you might have to? I believe that it's getting the OSX gcc, which would use the "-bundle" argument, but it should instead be getting the old-school gcc-4.2, which accepts "-shared". -Matt On Wed, May 18, 2011 at 3:03 PM, Jean-Claude Passy<jcpassy at gmail.com <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> wrote:
/ Hi all, />/ />/ I am able to install yt on my Mac if I turn off the Bzlib option. When it is />/ turned on, the installation fails the following way: />/ />/ ----------------------------------------------------------------------------------------------------------------------------- />/ echo ".so man1/bzgrep.1"> />/ /Users/jean-claudepassy/Work/yt-i386/man/man1/bzegrep.1 echo ".so />/ man1/bzgrep.1"> /Users/jean-claudepassy/Work/yt-i386/man/man1/bzfgrep.1 />/ echo ".so man1/bzmore.1"> />/ /Users/jean-claudepassy/Work/yt-i386/man/man1/bzless.1 echo ".so />/ man1/bzdiff.1"> /Users/jean-claudepassy/Work/yt-i386/man/man1/bzcmp.1 gcc />/ -shared -Wl,-install_name -Wl,libbz2.so.1.0 -o libbz2.so.1.0.4 blocksort.o />/ huffman.o crct\ able.o randtable.o compress.o decompress.o bzlib.o Undefined />/ symbols: "_main", referenced from: start in crt1.10.5.o ld: />/ symbol(s) not found collect2: ld returned 1 exit status make: *** [all] />/ Error 1 />/ ----------------------------------------------------------------------------------------------------------------------------- />/ />/ Does anyone have an idea how to fix this ? />/ />/ Thanks a lot, />/ />/ JC />/ />/ _______________________________________________ />/ yt-users mailing list />/ yt-users at lists.spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> />/ http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org />/ />
-- ------------------------------------------------- David A. Riethmiller Ph.D. Candidate, Astrophysical Institute Ohio University Clippinger Labs 338 http://www.phy.ohiou.edu/~rieth/
Hi David, I'm also running 10.5, and I had this same issue. Changing line 37 of the install script to INST_BZLIB=0 seemed to work for me. The comments say something about bzlib being needed to prevent broken mercurial installations, but that didn't seem to happen to me. -Andrew Myers On Wed, Jan 25, 2012 at 8:03 AM, David Riethmiller <rieth@phy.ohiou.edu>wrote:
Hi all -
Did the archived solution below work for you? I'm trying to install and having exactly the same issue, and this doesn't seem to solve my problem. I'm running OSX 10.5, and my default version of gcc is 4.0.1:
% gcc -v Using built-in specs. Target: i686-apple-darwin9 Configured with: /var/tmp/gcc/gcc-5465~16/src/configure --disable-checking -enable-werror --prefix=/usr --mandir=/share/man --enable-languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^.-]*$/s/$/-4.0/ --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/usr/lib --build=i686-apple-darwin9 --with-arch=apple --with-tune=generic --host=i686-apple-darwin9 --target=i686-apple-darwin9 Thread model: posix gcc version 4.0.1 (Apple Inc. build 5465)
I've installed gcc-4.2, but it won't take the "-shared" flag.
% gcc-4.2 -v Using built-in specs. Target: i686-apple-darwin9 Configured with: ../gcc-4.2.4/configure --prefix=/sw --prefix=/sw/lib/gcc4.2 --mandir=/sw/share/man --infodir=/sw/share/info --enable-languages=c,c++,fortran,objc,java --with-arch=nocona --with-tune=generic --host=i686-apple-darwin9 --with-gmp=/sw --with-libiconv-prefix=/sw --with-system-zlib --x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib --disable-libjava-multilib Thread model: posix gcc version 4.2.4
Using either gcc-4.0.1 or gcc-4.2, I still get a compilation error that it couldn't find main:
% make -f Makefile-libbz2_so CFLAGS=-fPIC LDFLAGS=-fPIC PREFIX=/Users/rieth/yt_analysis gcc -shared -Wl,-install_name -Wl,libbz2.so.1.0 -o libbz2.so.1.0.4 blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o Undefined symbols: "_main", referenced from: start in crt1.10.5.o ld: symbol(s) not found collect2: ld returned 1 exit status make: *** [all] Error 1
I'm sure I'm doing something really stupid, but I can't figure out what it is. Can anyone help? (Also, sorry for the cut-and-paste; I couldn't figure out how to reply directly to the archived post.)
Thanks, Dave
--------------------------------------------------------------------
Matthew Turk wrote:
Hi JC,
Are you setting CC and CXX to gcc-4.2 and g++-4.2, as the note in the install script mentions you might have to? I believe that it's getting the OSX gcc, which would use the "-bundle" argument, but it should instead be getting the old-school gcc-4.2, which accepts "-shared".
-Matt
On Wed, May 18, 2011 at 3:03 PM, Jean-Claude Passy <jcpassy at gmail.com <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> wrote:
* Hi all,*>**>* I am able to install yt on my Mac if I turn off the Bzlib option. When it is*>* turned on, the installation fails the following way:*>**>* -----------------------------------------------------------------------------------------------------------------------------*>* echo ".so man1/bzgrep.1" >*>* /Users/jean-claudepassy/Work/yt-i386/man/man1/bzegrep.1 echo ".so*>* man1/bzgrep.1" > /Users/jean-claudepassy/Work/yt-i386/man/man1/bzfgrep.1*>* echo ".so man1/bzmore.1" >*>* /Users/jean-claudepassy/Work/yt-i386/man/man1/bzless.1 echo ".so*>* man1/bzdiff.1" > /Users/jean-claudepassy/Work/yt-i386/man/man1/bzcmp.1 gcc*>* -shared -Wl,-install_name -Wl,libbz2.so.1.0 -o libbz2.so.1.0.4 blocksort.o*>* huffman.o crct\ able.o randtable.o compress.o decompress.o bzlib.o Undefined*>* symbols: "_main", referenced from: start in crt1.10.5.o ld:*>* symbol(s) not found collect2: ld returned 1 exit status make: *** [all]*>* Error 1*>* -----------------------------------------------------------------------------------------------------------------------------*>**>* Does anyone have an idea how to fix this ?*>**>* Thanks a lot,*>**>* JC*>**>* _______________________________________________*>* yt-users mailing list*>* yt-users at lists.spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>*>* http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org*>**>
-- ------------------------------------------------- David A. Riethmiller Ph.D. Candidate, Astrophysical Institute Ohio University
Clippinger Labs 338http://www.phy.ohiou.edu/~rieth/
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
And, reading your email carefully this time, I see that you knew this already. Sorry. But no, the archived solution did not work for me. I (so far) haven't run into any problems due to using the system bzlib. On Wed, Jan 25, 2012 at 8:08 AM, Andrew Myers <atmyers@berkeley.edu> wrote:
Hi David,
I'm also running 10.5, and I had this same issue. Changing line 37 of the install script to
INST_BZLIB=0
seemed to work for me. The comments say something about bzlib being needed to prevent broken mercurial installations, but that didn't seem to happen to me.
-Andrew Myers
On Wed, Jan 25, 2012 at 8:03 AM, David Riethmiller <rieth@phy.ohiou.edu>wrote:
Hi all -
Did the archived solution below work for you? I'm trying to install and having exactly the same issue, and this doesn't seem to solve my problem. I'm running OSX 10.5, and my default version of gcc is 4.0.1:
% gcc -v Using built-in specs. Target: i686-apple-darwin9 Configured with: /var/tmp/gcc/gcc-5465~16/src/configure --disable-checking -enable-werror --prefix=/usr --mandir=/share/man --enable-languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^.-]*$/s/$/-4.0/ --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/usr/lib --build=i686-apple-darwin9 --with-arch=apple --with-tune=generic --host=i686-apple-darwin9 --target=i686-apple-darwin9 Thread model: posix gcc version 4.0.1 (Apple Inc. build 5465)
I've installed gcc-4.2, but it won't take the "-shared" flag.
% gcc-4.2 -v Using built-in specs. Target: i686-apple-darwin9 Configured with: ../gcc-4.2.4/configure --prefix=/sw --prefix=/sw/lib/gcc4.2 --mandir=/sw/share/man --infodir=/sw/share/info --enable-languages=c,c++,fortran,objc,java --with-arch=nocona --with-tune=generic --host=i686-apple-darwin9 --with-gmp=/sw --with-libiconv-prefix=/sw --with-system-zlib --x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib --disable-libjava-multilib Thread model: posix gcc version 4.2.4
Using either gcc-4.0.1 or gcc-4.2, I still get a compilation error that it couldn't find main:
% make -f Makefile-libbz2_so CFLAGS=-fPIC LDFLAGS=-fPIC PREFIX=/Users/rieth/yt_analysis gcc -shared -Wl,-install_name -Wl,libbz2.so.1.0 -o libbz2.so.1.0.4 blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o Undefined symbols: "_main", referenced from: start in crt1.10.5.o ld: symbol(s) not found collect2: ld returned 1 exit status make: *** [all] Error 1
I'm sure I'm doing something really stupid, but I can't figure out what it is. Can anyone help? (Also, sorry for the cut-and-paste; I couldn't figure out how to reply directly to the archived post.)
Thanks, Dave
--------------------------------------------------------------------
Matthew Turk wrote:
Hi JC,
Are you setting CC and CXX to gcc-4.2 and g++-4.2, as the note in the install script mentions you might have to? I believe that it's getting the OSX gcc, which would use the "-bundle" argument, but it should instead be getting the old-school gcc-4.2, which accepts "-shared".
-Matt
On Wed, May 18, 2011 at 3:03 PM, Jean-Claude Passy <jcpassy at gmail.com <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> wrote:
* Hi all,*>**>* I am able to install yt on my Mac if I turn off the Bzlib option. When it is*>* turned on, the installation fails the following way:*>**>* -----------------------------------------------------------------------------------------------------------------------------*>* echo ".so man1/bzgrep.1" >*>* /Users/jean-claudepassy/Work/yt-i386/man/man1/bzegrep.1 echo ".so*>* man1/bzgrep.1" > /Users/jean-claudepassy/Work/yt-i386/man/man1/bzfgrep.1*>* echo ".so man1/bzmore.1" >*>* /Users/jean-claudepassy/Work/yt-i386/man/man1/bzless.1 echo ".so*>* man1/bzdiff.1" > /Users/jean-claudepassy/Work/yt-i386/man/man1/bzcmp.1 gcc*>* -shared -Wl,-install_name -Wl,libbz2.so.1.0 -o libbz2.so.1.0.4 blocksort.o*>* huffman.o crct\ able.o randtable.o compress.o decompress.o bzlib.o Undefined*>* symbols: "_main", referenced from: start in crt1.10.5.o ld:*>* symbol(s) not found collect2: ld returned 1 exit status make: *** [all]*>* Error 1*>* -----------------------------------------------------------------------------------------------------------------------------*>**>* Does anyone have an idea how to fix this ?*>**>* Thanks a lot,*>**>* JC*>**>* _______________________________________________*>* yt-users mailing list*>* yt-users at lists.spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>*>* http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org*>**>
-- ------------------------------------------------- David A. Riethmiller Ph.D. Candidate, Astrophysical Institute Ohio University
Clippinger Labs 338http://www.phy.ohiou.edu/~rieth/
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Hi Dave. Is it possible to install the apple built gcc-4.2 on 10.5? It looks like you built that gcc-4.2, so it won't take the Apple custom flags. Not sure why the older gcc 4 would not work though... Best, Casey On Wed, Jan 25, 2012 at 10:17 AM, Andrew Myers <atmyers@berkeley.edu> wrote:
And, reading your email carefully this time, I see that you knew this already. Sorry. But no, the archived solution did not work for me. I (so far) haven't run into any problems due to using the system bzlib.
On Wed, Jan 25, 2012 at 8:08 AM, Andrew Myers <atmyers@berkeley.edu>wrote:
Hi David,
I'm also running 10.5, and I had this same issue. Changing line 37 of the install script to
INST_BZLIB=0
seemed to work for me. The comments say something about bzlib being needed to prevent broken mercurial installations, but that didn't seem to happen to me.
-Andrew Myers
On Wed, Jan 25, 2012 at 8:03 AM, David Riethmiller <rieth@phy.ohiou.edu>wrote:
Hi all -
Did the archived solution below work for you? I'm trying to install and having exactly the same issue, and this doesn't seem to solve my problem. I'm running OSX 10.5, and my default version of gcc is 4.0.1:
% gcc -v Using built-in specs. Target: i686-apple-darwin9 Configured with: /var/tmp/gcc/gcc-5465~16/src/configure --disable-checking -enable-werror --prefix=/usr --mandir=/share/man --enable-languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^.-]*$/s/$/-4.0/ --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/usr/lib --build=i686-apple-darwin9 --with-arch=apple --with-tune=generic --host=i686-apple-darwin9 --target=i686-apple-darwin9 Thread model: posix gcc version 4.0.1 (Apple Inc. build 5465)
I've installed gcc-4.2, but it won't take the "-shared" flag.
% gcc-4.2 -v Using built-in specs. Target: i686-apple-darwin9 Configured with: ../gcc-4.2.4/configure --prefix=/sw --prefix=/sw/lib/gcc4.2 --mandir=/sw/share/man --infodir=/sw/share/info --enable-languages=c,c++,fortran,objc,java --with-arch=nocona --with-tune=generic --host=i686-apple-darwin9 --with-gmp=/sw --with-libiconv-prefix=/sw --with-system-zlib --x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib --disable-libjava-multilib Thread model: posix gcc version 4.2.4
Using either gcc-4.0.1 or gcc-4.2, I still get a compilation error that it couldn't find main:
% make -f Makefile-libbz2_so CFLAGS=-fPIC LDFLAGS=-fPIC PREFIX=/Users/rieth/yt_analysis gcc -shared -Wl,-install_name -Wl,libbz2.so.1.0 -o libbz2.so.1.0.4 blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o Undefined symbols: "_main", referenced from: start in crt1.10.5.o ld: symbol(s) not found collect2: ld returned 1 exit status make: *** [all] Error 1
I'm sure I'm doing something really stupid, but I can't figure out what it is. Can anyone help? (Also, sorry for the cut-and-paste; I couldn't figure out how to reply directly to the archived post.)
Thanks, Dave
--------------------------------------------------------------------
Matthew Turk wrote:
Hi JC,
Are you setting CC and CXX to gcc-4.2 and g++-4.2, as the note in the install script mentions you might have to? I believe that it's getting the OSX gcc, which would use the "-bundle" argument, but it should instead be getting the old-school gcc-4.2, which accepts "-shared".
-Matt
On Wed, May 18, 2011 at 3:03 PM, Jean-Claude Passy <jcpassy at gmail.com <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> wrote:
* Hi all,*>**>* I am able to install yt on my Mac if I turn off the Bzlib option. When it is*>* turned on, the installation fails the following way:*>**>* -----------------------------------------------------------------------------------------------------------------------------*>* echo ".so man1/bzgrep.1" >*>* /Users/jean-claudepassy/Work/yt-i386/man/man1/bzegrep.1 echo ".so*>* man1/bzgrep.1" > /Users/jean-claudepassy/Work/yt-i386/man/man1/bzfgrep.1*>* echo ".so man1/bzmore.1" >*>* /Users/jean-claudepassy/Work/yt-i386/man/man1/bzless.1 echo ".so*>* man1/bzdiff.1" > /Users/jean-claudepassy/Work/yt-i386/man/man1/bzcmp.1 gcc*>* -shared -Wl,-install_name -Wl,libbz2.so.1.0 -o libbz2.so.1.0.4 blocksort.o*>* huffman.o crct\ able.o randtable.o compress.o decompress.o bzlib.o Undefined*>* symbols: "_main", referenced from: start in crt1.10.5.o ld:*>* symbol(s) not found collect2: ld returned 1 exit status make: *** [all]*>* Error 1*>* -----------------------------------------------------------------------------------------------------------------------------*>**>* Does anyone have an idea how to fix this ?*>**>* Thanks a lot,*>**>* JC*>**>* _______________________________________________*>* yt-users mailing list*>* yt-users at lists.spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>*>* http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org*>**>
-- ------------------------------------------------- David A. Riethmiller Ph.D. Candidate, Astrophysical Institute Ohio University
Clippinger Labs 338http://www.phy.ohiou.edu/~rieth/
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
participants (3)
-
Andrew Myers -
Casey W. Stark -
David Riethmiller