Create_profile error in parallel
Hi All, I'm seeing an error when I run YT 3.2 in parallel. Running in serial mode everything is fine. I have a bunch of fields I'm creating profiles for 'DarkMatter' is not one of them but that's where it fails. It looks like its picking up the DarkMatter radius rather than the gas radius? rp = yt.create_profile(sphere, 'radius', Fields, units = {'radius': 'kpc'}, n_bins=40) P002 yt : [ERROR ] 2015-05-14 22:09:54,308 YTFieldNotFound: Could not find field '('DarkMatter', 'radius')' in RD0001. I've attached the error file http://paste.yt-project.org/show/5547/ and the version info is: --- Version = 3.2-dev Changeset = 3e1887de7362+ (yt) tip --- Thanks! John _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
On Thu, May 14, 2015 at 11:44 PM, John Regan
Hi All,
I'm seeing an error when I run YT 3.2 in parallel. Running in serial mode everything is fine. I have a bunch of fields I'm creating profiles for 'DarkMatter' is not one of them but that's where it fails. It looks like its picking up the DarkMatter radius rather than the gas radius?
rp = yt.create_profile(sphere, 'radius', Fields, units = {'radius': 'kpc'}, n_bins=40) P002 yt : [ERROR ] 2015-05-14 22:09:54,308 YTFieldNotFound: Could not find field '('DarkMatter', 'radius')' in RD0001.
I've attached the error file http://paste.yt-project.org/show/5547/
Looks like the pastebin is down, can you paste it somewhere else?
and the version info is:
--- Version = 3.2-dev Changeset = 3e1887de7362+ (yt) tip ---
Thanks!
John
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Hi Nathan,
Here you go
https://dl.dropboxusercontent.com/u/18978426/yt/tmp/error_test.txt
On Fri, May 15, 2015 at 9:47 AM, Nathan Goldbaum
On Thu, May 14, 2015 at 11:44 PM, John Regan
wrote: Hi All,
I'm seeing an error when I run YT 3.2 in parallel. Running in serial mode everything is fine. I have a bunch of fields I'm creating profiles for 'DarkMatter' is not one of them but that's where it fails. It looks like its picking up the DarkMatter radius rather than the gas radius?
rp = yt.create_profile(sphere, 'radius', Fields, units = {'radius': 'kpc'}, n_bins=40) P002 yt : [ERROR ] 2015-05-14 22:09:54,308 YTFieldNotFound: Could not find field '('DarkMatter', 'radius')' in RD0001.
I've attached the error file http://paste.yt-project.org/show/5547/
Looks like the pastebin is down, can you paste it somewhere else?
and the version info is:
--- Version = 3.2-dev Changeset = 3e1887de7362+ (yt) tip ---
Thanks!
John
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
I'm not able to reproduce this using the following test script:
http://paste.debian.net/177400/
Of course, given that it failed on line 200, your script is more
complicated than mine. Can you alter or expand on my test script to make a
minimal example that fails? You can get enzo_tiny_cosmology from
yt-project.org/data, but it might be the case that your dataset has some
features that trigger this issue.
In particular, is this an Enzo 3.0 dataset? I also tried with the
ActiveParticleCosmology and wasn't able to reproduce the issue with that
one either.
-Nathan
On Thu, May 14, 2015 at 11:56 PM, John Regan
Hi Nathan,
Here you go
https://dl.dropboxusercontent.com/u/18978426/yt/tmp/error_test.txt
On Fri, May 15, 2015 at 9:47 AM, Nathan Goldbaum
wrote: On Thu, May 14, 2015 at 11:44 PM, John Regan
wrote: Hi All,
I'm seeing an error when I run YT 3.2 in parallel. Running in serial mode everything is fine. I have a bunch of fields I'm creating profiles for 'DarkMatter' is not one of them but that's where it fails. It looks like its picking up the DarkMatter radius rather than the gas radius?
rp = yt.create_profile(sphere, 'radius', Fields, units = {'radius': 'kpc'}, n_bins=40) P002 yt : [ERROR ] 2015-05-14 22:09:54,308 YTFieldNotFound: Could not find field '('DarkMatter', 'radius')' in RD0001.
I've attached the error file http://paste.yt-project.org/show/5547/
Looks like the pastebin is down, can you paste it somewhere else?
and the version info is:
--- Version = 3.2-dev Changeset = 3e1887de7362+ (yt) tip ---
Thanks!
John
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
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Hey,
Thanks. I'll start with your script and see if I can mine to behave. It is
an Enzo 3.0 dataset and it also has extra baryon and RT fields as well so
maybe that is doing something. Thanks!
John
On Fri, May 15, 2015 at 10:07 AM, Nathan Goldbaum
I'm not able to reproduce this using the following test script:
http://paste.debian.net/177400/
Of course, given that it failed on line 200, your script is more complicated than mine. Can you alter or expand on my test script to make a minimal example that fails? You can get enzo_tiny_cosmology from yt-project.org/data, but it might be the case that your dataset has some features that trigger this issue.
In particular, is this an Enzo 3.0 dataset? I also tried with the ActiveParticleCosmology and wasn't able to reproduce the issue with that one either.
-Nathan
On Thu, May 14, 2015 at 11:56 PM, John Regan
wrote: Hi Nathan,
Here you go
https://dl.dropboxusercontent.com/u/18978426/yt/tmp/error_test.txt
On Fri, May 15, 2015 at 9:47 AM, Nathan Goldbaum
wrote: On Thu, May 14, 2015 at 11:44 PM, John Regan
wrote:
Hi All,
I'm seeing an error when I run YT 3.2 in parallel. Running in serial mode everything is fine. I have a bunch of fields I'm creating profiles for 'DarkMatter' is not one of them but that's where it fails. It looks like its picking up the DarkMatter radius rather than the gas radius?
rp = yt.create_profile(sphere, 'radius', Fields, units = {'radius': 'kpc'}, n_bins=40) P002 yt : [ERROR ] 2015-05-14 22:09:54,308 YTFieldNotFound: Could not find field '('DarkMatter', 'radius')' in RD0001.
I've attached the error file http://paste.yt-project.org/show/5547/
Looks like the pastebin is down, can you paste it somewhere else?
and the version info is:
--- Version = 3.2-dev Changeset = 3e1887de7362+ (yt) tip ---
Thanks!
John
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
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Hi Nathan,
Got it. The problem was that the first parameter file I read in had the
line AppendActiveParticleType = RadiationParticle.
The trouble was I put that in by hand as on restart I want that particle
created. YT went looking for that particle in that output though and for
some reason that was OK in serial but caused problems in parallel (in a
weird way too). Anyway if I comment that line out of the parameter file
everything works.
John
On Fri, May 15, 2015 at 10:10 AM, John Regan
Hey,
Thanks. I'll start with your script and see if I can mine to behave. It is an Enzo 3.0 dataset and it also has extra baryon and RT fields as well so maybe that is doing something. Thanks!
John
On Fri, May 15, 2015 at 10:07 AM, Nathan Goldbaum
wrote: I'm not able to reproduce this using the following test script:
http://paste.debian.net/177400/
Of course, given that it failed on line 200, your script is more complicated than mine. Can you alter or expand on my test script to make a minimal example that fails? You can get enzo_tiny_cosmology from yt-project.org/data, but it might be the case that your dataset has some features that trigger this issue.
In particular, is this an Enzo 3.0 dataset? I also tried with the ActiveParticleCosmology and wasn't able to reproduce the issue with that one either.
-Nathan
On Thu, May 14, 2015 at 11:56 PM, John Regan
wrote: Hi Nathan,
Here you go
https://dl.dropboxusercontent.com/u/18978426/yt/tmp/error_test.txt
On Fri, May 15, 2015 at 9:47 AM, Nathan Goldbaum
wrote: On Thu, May 14, 2015 at 11:44 PM, John Regan < johnanthonyregan@gmail.com> wrote:
Hi All,
I'm seeing an error when I run YT 3.2 in parallel. Running in serial mode everything is fine. I have a bunch of fields I'm creating profiles for 'DarkMatter' is not one of them but that's where it fails. It looks like its picking up the DarkMatter radius rather than the gas radius?
rp = yt.create_profile(sphere, 'radius', Fields, units = {'radius': 'kpc'}, n_bins=40) P002 yt : [ERROR ] 2015-05-14 22:09:54,308 YTFieldNotFound: Could not find field '('DarkMatter', 'radius')' in RD0001.
I've attached the error file http://paste.yt-project.org/show/5547/
Looks like the pastebin is down, can you paste it somewhere else?
and the version info is:
--- Version = 3.2-dev Changeset = 3e1887de7362+ (yt) tip ---
Thanks!
John
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
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participants (2)
-
John Regan
-
Nathan Goldbaum