yt installation problem in fedora 14
While Installing yt through installation script it fails while installing numpy-1.6.1 in fedora 14. the output of the script is shown below [root@shashank yt]# bash install_script.sh ======================================================================== Hi there! This is the YT installation script. We're going to download some stuff and install it to create a self-contained, isolated environment for YT to run within. Inside the installation script you can set a few variables. Here's what they're currently set to -- you can hit Ctrl-C and edit the values in the script if you aren't such a fan. INST_ZLIB = 1 so I will be installing zlib INST_BZLIB = 1 so I will be installing bzlib INST_PNG = 1 so I will be installing libpng INST_FTYPE = 1 so I will be installing freetype2 INST_SQLITE3 = 1 so I will be installing SQLite3 INST_FORTHON = 1 so I will be installing Forthon (for Halo Finding, etc) INST_HG = 1 so I will be installing Mercurial INST_ENZO = 1 so I will be checking out Enzo HDF5_DIR is not set, so I will be installing HDF5 Installation will be to /usr/local/yt/yt-x86_64 and I'll be logging the installation in /usr/local/yt/yt-x86_64/yt_install.log I think that about wraps it up. If you want to continue, hit enter. If you'd rather stop, maybe think things over, even grab a sandwich, hit Ctrl-C. ======================================================================== [hit enter] Awesome! Here we go. Using wget Downloading HDF5 Downloading hdf5-1.8.7.tar.gz from yt-project.org Downloading zlib-1.2.3.tar.bz2 from yt-project.org Downloading bzip2-1.0.5.tar.gz from yt-project.org Downloading libpng-1.2.43.tar.gz from yt-project.org Downloading freetype-2.4.4.tar.gz from yt-project.org Downloading sqlite-autoconf-3070500.tar.gz from yt-project.org Downloading Python-2.7.2.tgz from yt-project.org Downloading numpy-1.6.1.tar.gz from yt-project.org Downloading matplotlib-1.1.0.tar.gz from yt-project.org Downloading mercurial-2.0.tar.gz from yt-project.org Downloading ipython-0.10.tar.gz from yt-project.org Downloading h5py-2.0.1.tar.gz from yt-project.org Downloading Cython-0.15.1.tar.gz from yt-project.org Downloading Forthon-0.8.5.tar.gz from yt-project.org Downloading ext-3.3.2.zip from yt-project.org Downloading ext-slate-110328.zip from yt-project.org Downloading PhiloGL-1.4.2.zip from yt-project.org Installing Mercurial. Setting YT_DIR=/usr/local/yt/yt-x86_64/src/yt-hg/ Installing distribute Installing pip Installing numpy-1.6.1 (arguments: 'numpy-1.6.1') Failure. Check /usr/local/yt/yt-x86_64/yt_install.log. [root@shashank yt]# I have attached the yt_install.log file Please help thanks in advance Prakash
Hi Prakash, Looking over the install log, it looks to me like there's a type that uses 'complex' but GCC doesn't know complex is a type specifier. By default, numpy assumes you have complex.h ( see numpy/core/setup.py ). For me, complex.h is located in /usr/include , but I don't know where it is located on your system -- in fact, there may be an additional complex.h that does not correctly define things (as the SAGE project found, in bug 8278) that is getting in the way. Let me know what you can find, Matt PS Welcome to yt-users! On Fri, Feb 24, 2012 at 4:30 AM, Prakash Sarkar <cyclone.turner@gmail.com> wrote:
While Installing yt through installation script it fails while installing numpy-1.6.1 in fedora 14. the output of the script is shown below
[root@shashank yt]# bash install_script.sh
========================================================================
Hi there! This is the YT installation script. We're going to download some stuff and install it to create a self-contained, isolated environment for YT to run within.
Inside the installation script you can set a few variables. Here's what they're currently set to -- you can hit Ctrl-C and edit the values in the script if you aren't such a fan.
INST_ZLIB = 1 so I will be installing zlib INST_BZLIB = 1 so I will be installing bzlib INST_PNG = 1 so I will be installing libpng INST_FTYPE = 1 so I will be installing freetype2 INST_SQLITE3 = 1 so I will be installing SQLite3 INST_FORTHON = 1 so I will be installing Forthon (for Halo Finding, etc) INST_HG = 1 so I will be installing Mercurial INST_ENZO = 1 so I will be checking out Enzo
HDF5_DIR is not set, so I will be installing HDF5
Installation will be to /usr/local/yt/yt-x86_64
and I'll be logging the installation in /usr/local/yt/yt-x86_64/yt_install.log
I think that about wraps it up. If you want to continue, hit enter. If you'd rather stop, maybe think things over, even grab a sandwich, hit Ctrl-C.
========================================================================
[hit enter]
Awesome! Here we go.
Using wget Downloading HDF5 Downloading hdf5-1.8.7.tar.gz from yt-project.org Downloading zlib-1.2.3.tar.bz2 from yt-project.org Downloading bzip2-1.0.5.tar.gz from yt-project.org Downloading libpng-1.2.43.tar.gz from yt-project.org Downloading freetype-2.4.4.tar.gz from yt-project.org Downloading sqlite-autoconf-3070500.tar.gz from yt-project.org Downloading Python-2.7.2.tgz from yt-project.org Downloading numpy-1.6.1.tar.gz from yt-project.org Downloading matplotlib-1.1.0.tar.gz from yt-project.org Downloading mercurial-2.0.tar.gz from yt-project.org Downloading ipython-0.10.tar.gz from yt-project.org Downloading h5py-2.0.1.tar.gz from yt-project.org Downloading Cython-0.15.1.tar.gz from yt-project.org Downloading Forthon-0.8.5.tar.gz from yt-project.org Downloading ext-3.3.2.zip from yt-project.org Downloading ext-slate-110328.zip from yt-project.org Downloading PhiloGL-1.4.2.zip from yt-project.org Installing Mercurial. Setting YT_DIR=/usr/local/yt/yt-x86_64/src/yt-hg/ Installing distribute Installing pip Installing numpy-1.6.1 (arguments: 'numpy-1.6.1') Failure. Check /usr/local/yt/yt-x86_64/yt_install.log. [root@shashank yt]#
I have attached the yt_install.log file Please help
thanks in advance
Prakash
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Hope it helps . [prakash@shashank Desktop]$ locate complex.h /home/prakash/Downloads/gsl-1.9/complex/gsl_complex.h /home/prakash/Downloads/gsl-1.9/fft/gsl_dft_complex.h /home/prakash/Downloads/gsl-1.9/fft/gsl_fft_complex.h /home/prakash/Downloads/gsl-1.9/fft/gsl_fft_halfcomplex.h /home/prakash/Downloads/gsl-1.9/vector/gsl_vector_complex.h /usr/include/complex.h /usr/include/boost/accumulators/numeric/functional/complex.hpp /usr/include/boost/config/no_tr1/complex.hpp /usr/include/boost/math/complex.hpp /usr/include/boost/serialization/complex.hpp /usr/include/boost/tr1/complex.hpp /usr/include/boost/type_traits/is_complex.hpp /usr/include/boost/typeof/std/complex.hpp /usr/include/c++/4.5.1/complex.h /usr/include/c++/4.5.1/tr1/complex.h /usr/lib64/R/library/base/html/complex.html /usr/local/include/complex.h /usr/local/matlab/toolbox/rtw/rtwdemos/html/rtwdemo_complex.html /usr/local/yt/yt-x86_64/src/hdf5-1.8.7/tools/testfiles/tcompound_complex.h5 /usr/local/yt/yt-x86_64/src/hdf5-1.8.7/tools/testfiles/tcompound_complex.h5.xml /usr/share/doc/PyQt4-devel-4.8.3/html/qstyleoptioncomplex.html /usr/share/doc/libstdc++-docs-4.5.1/html/manual/complex.html /usr/share/doc/qtscriptbindings-0.1.0/doc/qstyleoptioncomplex.html /usr/share/man/man0p/complex.h.0p.gz [prakash@shashank Desktop]$ On Fri, Feb 24, 2012 at 4:48 PM, Matthew Turk <matthewturk@gmail.com> wrote:
Hi Prakash,
Looking over the install log, it looks to me like there's a type that uses 'complex' but GCC doesn't know complex is a type specifier. By default, numpy assumes you have complex.h ( see numpy/core/setup.py ). For me, complex.h is located in /usr/include , but I don't know where it is located on your system -- in fact, there may be an additional complex.h that does not correctly define things (as the SAGE project found, in bug 8278) that is getting in the way. Let me know what you can find,
Matt
PS Welcome to yt-users!
On Fri, Feb 24, 2012 at 4:30 AM, Prakash Sarkar <cyclone.turner@gmail.com> wrote:
While Installing yt through installation script it fails while installing numpy-1.6.1 in fedora 14. the output of the script is shown below
[root@shashank yt]# bash install_script.sh
========================================================================
Hi there! This is the YT installation script. We're going to download some stuff and install it to create a self-contained, isolated environment for YT to run within.
Inside the installation script you can set a few variables. Here's what they're currently set to -- you can hit Ctrl-C and edit the values in the script if you aren't such a fan.
INST_ZLIB = 1 so I will be installing zlib INST_BZLIB = 1 so I will be installing bzlib INST_PNG = 1 so I will be installing libpng INST_FTYPE = 1 so I will be installing freetype2 INST_SQLITE3 = 1 so I will be installing SQLite3 INST_FORTHON = 1 so I will be installing Forthon (for Halo Finding, etc) INST_HG = 1 so I will be installing Mercurial INST_ENZO = 1 so I will be checking out Enzo
HDF5_DIR is not set, so I will be installing HDF5
Installation will be to /usr/local/yt/yt-x86_64
and I'll be logging the installation in /usr/local/yt/yt-x86_64/yt_install.log
I think that about wraps it up. If you want to continue, hit enter. If you'd rather stop, maybe think things over, even grab a sandwich, hit Ctrl-C.
========================================================================
[hit enter]
Awesome! Here we go.
Using wget Downloading HDF5 Downloading hdf5-1.8.7.tar.gz from yt-project.org Downloading zlib-1.2.3.tar.bz2 from yt-project.org Downloading bzip2-1.0.5.tar.gz from yt-project.org Downloading libpng-1.2.43.tar.gz from yt-project.org Downloading freetype-2.4.4.tar.gz from yt-project.org Downloading sqlite-autoconf-3070500.tar.gz from yt-project.org Downloading Python-2.7.2.tgz from yt-project.org Downloading numpy-1.6.1.tar.gz from yt-project.org Downloading matplotlib-1.1.0.tar.gz from yt-project.org Downloading mercurial-2.0.tar.gz from yt-project.org Downloading ipython-0.10.tar.gz from yt-project.org Downloading h5py-2.0.1.tar.gz from yt-project.org Downloading Cython-0.15.1.tar.gz from yt-project.org Downloading Forthon-0.8.5.tar.gz from yt-project.org Downloading ext-3.3.2.zip from yt-project.org Downloading ext-slate-110328.zip from yt-project.org Downloading PhiloGL-1.4.2.zip from yt-project.org Installing Mercurial. Setting YT_DIR=/usr/local/yt/yt-x86_64/src/yt-hg/ Installing distribute Installing pip Installing numpy-1.6.1 (arguments: 'numpy-1.6.1') Failure. Check /usr/local/yt/yt-x86_64/yt_install.log. [root@shashank yt]#
I have attached the yt_install.log file Please help
thanks in advance
Prakash
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
/usr/local/include/complex.h : comes from numerical recipes I think it is conflicting with the /usr/include/complex.h which is for GCC. Is there any other way to rectify it without changing /usr/local/include/complex.h. On Fri, Feb 24, 2012 at 4:57 PM, Prakash Sarkar <cyclone.turner@gmail.com>wrote:
Hope it helps . [prakash@shashank Desktop]$ locate complex.h /home/prakash/Downloads/gsl-1.9/complex/gsl_complex.h /home/prakash/Downloads/gsl-1.9/fft/gsl_dft_complex.h /home/prakash/Downloads/gsl-1.9/fft/gsl_fft_complex.h /home/prakash/Downloads/gsl-1.9/fft/gsl_fft_halfcomplex.h /home/prakash/Downloads/gsl-1.9/vector/gsl_vector_complex.h /usr/include/complex.h /usr/include/boost/accumulators/numeric/functional/complex.hpp /usr/include/boost/config/no_tr1/complex.hpp /usr/include/boost/math/complex.hpp /usr/include/boost/serialization/complex.hpp /usr/include/boost/tr1/complex.hpp /usr/include/boost/type_traits/is_complex.hpp /usr/include/boost/typeof/std/complex.hpp /usr/include/c++/4.5.1/complex.h /usr/include/c++/4.5.1/tr1/complex.h /usr/lib64/R/library/base/html/complex.html /usr/local/include/complex.h /usr/local/matlab/toolbox/rtw/rtwdemos/html/rtwdemo_complex.html /usr/local/yt/yt-x86_64/src/hdf5-1.8.7/tools/testfiles/tcompound_complex.h5
/usr/local/yt/yt-x86_64/src/hdf5-1.8.7/tools/testfiles/tcompound_complex.h5.xml /usr/share/doc/PyQt4-devel-4.8.3/html/qstyleoptioncomplex.html /usr/share/doc/libstdc++-docs-4.5.1/html/manual/complex.html /usr/share/doc/qtscriptbindings-0.1.0/doc/qstyleoptioncomplex.html /usr/share/man/man0p/complex.h.0p.gz [prakash@shashank Desktop]$
On Fri, Feb 24, 2012 at 4:48 PM, Matthew Turk <matthewturk@gmail.com>wrote:
Hi Prakash,
Looking over the install log, it looks to me like there's a type that uses 'complex' but GCC doesn't know complex is a type specifier. By default, numpy assumes you have complex.h ( see numpy/core/setup.py ). For me, complex.h is located in /usr/include , but I don't know where it is located on your system -- in fact, there may be an additional complex.h that does not correctly define things (as the SAGE project found, in bug 8278) that is getting in the way. Let me know what you can find,
Matt
PS Welcome to yt-users!
On Fri, Feb 24, 2012 at 4:30 AM, Prakash Sarkar <cyclone.turner@gmail.com> wrote:
While Installing yt through installation script it fails while installing numpy-1.6.1 in fedora 14. the output of the script is shown below
[root@shashank yt]# bash install_script.sh
========================================================================
Hi there! This is the YT installation script. We're going to download some stuff and install it to create a self-contained, isolated environment for YT to run within.
Inside the installation script you can set a few variables. Here's what they're currently set to -- you can hit Ctrl-C and edit the values in the script if you aren't such a fan.
INST_ZLIB = 1 so I will be installing zlib INST_BZLIB = 1 so I will be installing bzlib INST_PNG = 1 so I will be installing libpng INST_FTYPE = 1 so I will be installing freetype2 INST_SQLITE3 = 1 so I will be installing SQLite3 INST_FORTHON = 1 so I will be installing Forthon (for Halo Finding, etc) INST_HG = 1 so I will be installing Mercurial INST_ENZO = 1 so I will be checking out Enzo
HDF5_DIR is not set, so I will be installing HDF5
Installation will be to /usr/local/yt/yt-x86_64
and I'll be logging the installation in /usr/local/yt/yt-x86_64/yt_install.log
I think that about wraps it up. If you want to continue, hit enter. If you'd rather stop, maybe think things over, even grab a sandwich, hit Ctrl-C.
========================================================================
[hit enter]
Awesome! Here we go.
Using wget Downloading HDF5 Downloading hdf5-1.8.7.tar.gz from yt-project.org Downloading zlib-1.2.3.tar.bz2 from yt-project.org Downloading bzip2-1.0.5.tar.gz from yt-project.org Downloading libpng-1.2.43.tar.gz from yt-project.org Downloading freetype-2.4.4.tar.gz from yt-project.org Downloading sqlite-autoconf-3070500.tar.gz from yt-project.org Downloading Python-2.7.2.tgz from yt-project.org Downloading numpy-1.6.1.tar.gz from yt-project.org Downloading matplotlib-1.1.0.tar.gz from yt-project.org Downloading mercurial-2.0.tar.gz from yt-project.org Downloading ipython-0.10.tar.gz from yt-project.org Downloading h5py-2.0.1.tar.gz from yt-project.org Downloading Cython-0.15.1.tar.gz from yt-project.org Downloading Forthon-0.8.5.tar.gz from yt-project.org Downloading ext-3.3.2.zip from yt-project.org Downloading ext-slate-110328.zip from yt-project.org Downloading PhiloGL-1.4.2.zip from yt-project.org Installing Mercurial. Setting YT_DIR=/usr/local/yt/yt-x86_64/src/yt-hg/ Installing distribute Installing pip Installing numpy-1.6.1 (arguments: 'numpy-1.6.1') Failure. Check /usr/local/yt/yt-x86_64/yt_install.log. [root@shashank yt]#
I have attached the yt_install.log file Please help
thanks in advance
Prakash
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
HI Prakash, You could try renaming nr's complex to nr_complex.h and in NR-code include "nr_complex.h". Someone else here might have another idea, but if you really want to get NumPy to compile with conflicting complex.h files you may have to email to the NumPy mailing list. -Matt On Fri, Feb 24, 2012 at 6:35 AM, Prakash Sarkar <cyclone.turner@gmail.com> wrote:
/usr/local/include/complex.h : comes from numerical recipes I think it is conflicting with the /usr/include/complex.h which is for GCC. Is there any other way to rectify it without changing /usr/local/include/complex.h.
On Fri, Feb 24, 2012 at 4:57 PM, Prakash Sarkar <cyclone.turner@gmail.com> wrote:
Hope it helps . [prakash@shashank Desktop]$ locate complex.h /home/prakash/Downloads/gsl-1.9/complex/gsl_complex.h /home/prakash/Downloads/gsl-1.9/fft/gsl_dft_complex.h /home/prakash/Downloads/gsl-1.9/fft/gsl_fft_complex.h /home/prakash/Downloads/gsl-1.9/fft/gsl_fft_halfcomplex.h /home/prakash/Downloads/gsl-1.9/vector/gsl_vector_complex.h /usr/include/complex.h /usr/include/boost/accumulators/numeric/functional/complex.hpp /usr/include/boost/config/no_tr1/complex.hpp /usr/include/boost/math/complex.hpp /usr/include/boost/serialization/complex.hpp /usr/include/boost/tr1/complex.hpp /usr/include/boost/type_traits/is_complex.hpp /usr/include/boost/typeof/std/complex.hpp /usr/include/c++/4.5.1/complex.h /usr/include/c++/4.5.1/tr1/complex.h /usr/lib64/R/library/base/html/complex.html /usr/local/include/complex.h /usr/local/matlab/toolbox/rtw/rtwdemos/html/rtwdemo_complex.html
/usr/local/yt/yt-x86_64/src/hdf5-1.8.7/tools/testfiles/tcompound_complex.h5
/usr/local/yt/yt-x86_64/src/hdf5-1.8.7/tools/testfiles/tcompound_complex.h5.xml /usr/share/doc/PyQt4-devel-4.8.3/html/qstyleoptioncomplex.html /usr/share/doc/libstdc++-docs-4.5.1/html/manual/complex.html /usr/share/doc/qtscriptbindings-0.1.0/doc/qstyleoptioncomplex.html /usr/share/man/man0p/complex.h.0p.gz [prakash@shashank Desktop]$
On Fri, Feb 24, 2012 at 4:48 PM, Matthew Turk <matthewturk@gmail.com> wrote:
Hi Prakash,
Looking over the install log, it looks to me like there's a type that uses 'complex' but GCC doesn't know complex is a type specifier. By default, numpy assumes you have complex.h ( see numpy/core/setup.py ). For me, complex.h is located in /usr/include , but I don't know where it is located on your system -- in fact, there may be an additional complex.h that does not correctly define things (as the SAGE project found, in bug 8278) that is getting in the way. Let me know what you can find,
Matt
PS Welcome to yt-users!
On Fri, Feb 24, 2012 at 4:30 AM, Prakash Sarkar <cyclone.turner@gmail.com> wrote:
While Installing yt through installation script it fails while installing numpy-1.6.1 in fedora 14. the output of the script is shown below
[root@shashank yt]# bash install_script.sh
========================================================================
Hi there! This is the YT installation script. We're going to download some stuff and install it to create a self-contained, isolated environment for YT to run within.
Inside the installation script you can set a few variables. Here's what they're currently set to -- you can hit Ctrl-C and edit the values in the script if you aren't such a fan.
INST_ZLIB = 1 so I will be installing zlib INST_BZLIB = 1 so I will be installing bzlib INST_PNG = 1 so I will be installing libpng INST_FTYPE = 1 so I will be installing freetype2 INST_SQLITE3 = 1 so I will be installing SQLite3 INST_FORTHON = 1 so I will be installing Forthon (for Halo Finding, etc) INST_HG = 1 so I will be installing Mercurial INST_ENZO = 1 so I will be checking out Enzo
HDF5_DIR is not set, so I will be installing HDF5
Installation will be to /usr/local/yt/yt-x86_64
and I'll be logging the installation in /usr/local/yt/yt-x86_64/yt_install.log
I think that about wraps it up. If you want to continue, hit enter. If you'd rather stop, maybe think things over, even grab a sandwich, hit Ctrl-C.
========================================================================
[hit enter]
Awesome! Here we go.
Using wget Downloading HDF5 Downloading hdf5-1.8.7.tar.gz from yt-project.org Downloading zlib-1.2.3.tar.bz2 from yt-project.org Downloading bzip2-1.0.5.tar.gz from yt-project.org Downloading libpng-1.2.43.tar.gz from yt-project.org Downloading freetype-2.4.4.tar.gz from yt-project.org Downloading sqlite-autoconf-3070500.tar.gz from yt-project.org Downloading Python-2.7.2.tgz from yt-project.org Downloading numpy-1.6.1.tar.gz from yt-project.org Downloading matplotlib-1.1.0.tar.gz from yt-project.org Downloading mercurial-2.0.tar.gz from yt-project.org Downloading ipython-0.10.tar.gz from yt-project.org Downloading h5py-2.0.1.tar.gz from yt-project.org Downloading Cython-0.15.1.tar.gz from yt-project.org Downloading Forthon-0.8.5.tar.gz from yt-project.org Downloading ext-3.3.2.zip from yt-project.org Downloading ext-slate-110328.zip from yt-project.org Downloading PhiloGL-1.4.2.zip from yt-project.org Installing Mercurial. Setting YT_DIR=/usr/local/yt/yt-x86_64/src/yt-hg/ Installing distribute Installing pip Installing numpy-1.6.1 (arguments: 'numpy-1.6.1') Failure. Check /usr/local/yt/yt-x86_64/yt_install.log. [root@shashank yt]#
I have attached the yt_install.log file Please help
thanks in advance
Prakash
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Dear Matt, thanks, It works, after changing the file name again thank you all for this beautiful software "yt". regards Prakash On Fri, Feb 24, 2012 at 5:09 PM, Matthew Turk <matthewturk@gmail.com> wrote:
HI Prakash,
You could try renaming nr's complex to nr_complex.h and in NR-code include "nr_complex.h". Someone else here might have another idea, but if you really want to get NumPy to compile with conflicting complex.h files you may have to email to the NumPy mailing list.
-Matt
On Fri, Feb 24, 2012 at 6:35 AM, Prakash Sarkar <cyclone.turner@gmail.com> wrote:
/usr/local/include/complex.h : comes from numerical recipes I think it is conflicting with the /usr/include/complex.h which is for GCC. Is there any other way to rectify it without changing /usr/local/include/complex.h.
On Fri, Feb 24, 2012 at 4:57 PM, Prakash Sarkar < cyclone.turner@gmail.com> wrote:
Hope it helps . [prakash@shashank Desktop]$ locate complex.h /home/prakash/Downloads/gsl-1.9/complex/gsl_complex.h /home/prakash/Downloads/gsl-1.9/fft/gsl_dft_complex.h /home/prakash/Downloads/gsl-1.9/fft/gsl_fft_complex.h /home/prakash/Downloads/gsl-1.9/fft/gsl_fft_halfcomplex.h /home/prakash/Downloads/gsl-1.9/vector/gsl_vector_complex.h /usr/include/complex.h /usr/include/boost/accumulators/numeric/functional/complex.hpp /usr/include/boost/config/no_tr1/complex.hpp /usr/include/boost/math/complex.hpp /usr/include/boost/serialization/complex.hpp /usr/include/boost/tr1/complex.hpp /usr/include/boost/type_traits/is_complex.hpp /usr/include/boost/typeof/std/complex.hpp /usr/include/c++/4.5.1/complex.h /usr/include/c++/4.5.1/tr1/complex.h /usr/lib64/R/library/base/html/complex.html /usr/local/include/complex.h /usr/local/matlab/toolbox/rtw/rtwdemos/html/rtwdemo_complex.html
/usr/local/yt/yt-x86_64/src/hdf5-1.8.7/tools/testfiles/tcompound_complex.h5
/usr/local/yt/yt-x86_64/src/hdf5-1.8.7/tools/testfiles/tcompound_complex.h5.xml
/usr/share/doc/PyQt4-devel-4.8.3/html/qstyleoptioncomplex.html /usr/share/doc/libstdc++-docs-4.5.1/html/manual/complex.html /usr/share/doc/qtscriptbindings-0.1.0/doc/qstyleoptioncomplex.html /usr/share/man/man0p/complex.h.0p.gz [prakash@shashank Desktop]$
On Fri, Feb 24, 2012 at 4:48 PM, Matthew Turk <matthewturk@gmail.com> wrote:
Hi Prakash,
Looking over the install log, it looks to me like there's a type that uses 'complex' but GCC doesn't know complex is a type specifier. By default, numpy assumes you have complex.h ( see numpy/core/setup.py ). For me, complex.h is located in /usr/include , but I don't know where it is located on your system -- in fact, there may be an additional complex.h that does not correctly define things (as the SAGE project found, in bug 8278) that is getting in the way. Let me know what you can find,
Matt
PS Welcome to yt-users!
On Fri, Feb 24, 2012 at 4:30 AM, Prakash Sarkar <cyclone.turner@gmail.com> wrote:
While Installing yt through installation script it fails while installing numpy-1.6.1 in fedora 14. the output of the script is shown below
[root@shashank yt]# bash install_script.sh
========================================================================
Hi there! This is the YT installation script. We're going to
download
some stuff and install it to create a self-contained, isolated environment for YT to run within.
Inside the installation script you can set a few variables. Here's what they're currently set to -- you can hit Ctrl-C and edit the values in the script if you aren't such a fan.
INST_ZLIB = 1 so I will be installing zlib INST_BZLIB = 1 so I will be installing bzlib INST_PNG = 1 so I will be installing libpng INST_FTYPE = 1 so I will be installing freetype2 INST_SQLITE3 = 1 so I will be installing SQLite3 INST_FORTHON = 1 so I will be installing Forthon (for Halo Finding, etc) INST_HG = 1 so I will be installing Mercurial INST_ENZO = 1 so I will be checking out Enzo
HDF5_DIR is not set, so I will be installing HDF5
Installation will be to /usr/local/yt/yt-x86_64
and I'll be logging the installation in /usr/local/yt/yt-x86_64/yt_install.log
I think that about wraps it up. If you want to continue, hit enter. If you'd rather stop, maybe think things over, even grab a sandwich, hit Ctrl-C.
========================================================================
[hit enter]
Awesome! Here we go.
Using wget Downloading HDF5 Downloading hdf5-1.8.7.tar.gz from yt-project.org Downloading zlib-1.2.3.tar.bz2 from yt-project.org Downloading bzip2-1.0.5.tar.gz from yt-project.org Downloading libpng-1.2.43.tar.gz from yt-project.org Downloading freetype-2.4.4.tar.gz from yt-project.org Downloading sqlite-autoconf-3070500.tar.gz from yt-project.org Downloading Python-2.7.2.tgz from yt-project.org Downloading numpy-1.6.1.tar.gz from yt-project.org Downloading matplotlib-1.1.0.tar.gz from yt-project.org Downloading mercurial-2.0.tar.gz from yt-project.org Downloading ipython-0.10.tar.gz from yt-project.org Downloading h5py-2.0.1.tar.gz from yt-project.org Downloading Cython-0.15.1.tar.gz from yt-project.org Downloading Forthon-0.8.5.tar.gz from yt-project.org Downloading ext-3.3.2.zip from yt-project.org Downloading ext-slate-110328.zip from yt-project.org Downloading PhiloGL-1.4.2.zip from yt-project.org Installing Mercurial. Setting YT_DIR=/usr/local/yt/yt-x86_64/src/yt-hg/ Installing distribute Installing pip Installing numpy-1.6.1 (arguments: 'numpy-1.6.1') Failure. Check /usr/local/yt/yt-x86_64/yt_install.log. [root@shashank yt]#
I have attached the yt_install.log file Please help
thanks in advance
Prakash
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participants (2)
-
Matthew Turk -
Prakash Sarkar