Hi, I just "svn up" my working yt copy (I did not have the volume_rendering earlier). Do I have to "make clean; make" again. I just tried to run the script... http://casa.colorado.edu/~skillman/research_and_codes/assets/rot_evolve.txt on my dataset. But I am getting this error... Traceback (most recent call last): File "visual.py", line 6, in <module> from yt.mods import * File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module> import yt.lagos as lagos File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__.py", line 58, in <module> import yt.amr_utils as amr_utils ImportError: No module named amr_utils
Hi Shankar, Looks like you're inside an enzo svn checkout. To update your entire enzo+yt source tree (which, because yt is included via svn:externals) you should do: /autohome/u118/agarwa23/enzo1.5/ svn up cd src/yt python2.6 setup.py build_ext -i This will (in order) put you in the root enzo directory, update your subversion checkout (which may update your Enzo tree to reflect recent bug fixes and so on) of both Enzo+yt, and then make sure that all of the extensions -- of which amr_utils is one! -- are built. The last step is the most important, and you should probably run this every time you svn up yt. I'll make a note of this in the documentation. -Matt On Sat, Feb 6, 2010 at 9:28 AM, Agarwal, Shankar <sagarwal@ku.edu> wrote:
Hi,
I just "svn up" my working yt copy (I did not have the volume_rendering earlier). Do I have to "make clean; make" again.
I just tried to run the script...
http://casa.colorado.edu/~skillman/research_and_codes/assets/rot_evolve.txt
on my dataset. But I am getting this error...
Traceback (most recent call last): File "visual.py", line 6, in <module> from yt.mods import * File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module> import yt.lagos as lagos File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__.py", line 58, in <module> import yt.amr_utils as amr_utils ImportError: No module named amr_utils _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Ok. But now I get this... Traceback (most recent call last): File "visual.py", line 6, in <module> from yt.mods import * File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module> import yt.lagos as lagos File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__.py", line 66, in <module> import PointCombine ImportError: /autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/PointCombine.so: undefined symbol: _intel_fast_memset Do you think my older version is somehow clashing with the new one? Shankar -----Original Message----- From: yt-users-bounces@lists.spacepope.org on behalf of Matthew Turk Sent: Sat 2/6/2010 11:46 AM To: Discussion of the yt analysis package Subject: Re: [yt-users] amr_utils Hi Shankar, Looks like you're inside an enzo svn checkout. To update your entire enzo+yt source tree (which, because yt is included via svn:externals) you should do: /autohome/u118/agarwa23/enzo1.5/ svn up cd src/yt python2.6 setup.py build_ext -i This will (in order) put you in the root enzo directory, update your subversion checkout (which may update your Enzo tree to reflect recent bug fixes and so on) of both Enzo+yt, and then make sure that all of the extensions -- of which amr_utils is one! -- are built. The last step is the most important, and you should probably run this every time you svn up yt. I'll make a note of this in the documentation. -Matt On Sat, Feb 6, 2010 at 9:28 AM, Agarwal, Shankar <sagarwal@ku.edu> wrote:
Hi,
I just "svn up" my working yt copy (I did not have the volume_rendering earlier). Do I have to "make clean; make" again.
I just tried to run the script...
http://casa.colorado.edu/~skillman/research_and_codes/assets/rot_evolve.txt
on my dataset. But I am getting this error...
Traceback (most recent call last): File "visual.py", line 6, in <module> from yt.mods import * File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module> import yt.lagos as lagos File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__.py", line 58, in <module> import yt.amr_utils as amr_utils ImportError: No module named amr_utils _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
No, this looks more like there are issues with your compiler, and components of yt being compiled with Intel. Compiling yt with anything other than GNU is tricky. You can try flushing it out with this: find /autohome/u118/agarwa23/enzo1.5/src/yt/ -name "*.so" |xargs rm -v find /autohome/u118/agarwa23/enzo1.5/src/yt/ -name "*.o" |xargs rm -v and then re-build. Make sure that if you are on a machine with modules you have the GNU modules loaded, not the Intel modules before this. -Matt On Sat, Feb 6, 2010 at 9:51 AM, Agarwal, Shankar <sagarwal@ku.edu> wrote:
Ok. But now I get this...
Traceback (most recent call last): File "visual.py", line 6, in <module> from yt.mods import * File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module> import yt.lagos as lagos File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__.py", line 66, in <module> import PointCombine ImportError: /autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/PointCombine.so: undefined symbol: _intel_fast_memset
Do you think my older version is somehow clashing with the new one?
Shankar
-----Original Message----- From: yt-users-bounces@lists.spacepope.org on behalf of Matthew Turk Sent: Sat 2/6/2010 11:46 AM To: Discussion of the yt analysis package Subject: Re: [yt-users] amr_utils
Hi Shankar,
Looks like you're inside an enzo svn checkout. To update your entire enzo+yt source tree (which, because yt is included via svn:externals) you should do:
/autohome/u118/agarwa23/enzo1.5/ svn up cd src/yt python2.6 setup.py build_ext -i
This will (in order) put you in the root enzo directory, update your subversion checkout (which may update your Enzo tree to reflect recent bug fixes and so on) of both Enzo+yt, and then make sure that all of the extensions -- of which amr_utils is one! -- are built. The last step is the most important, and you should probably run this every time you svn up yt. I'll make a note of this in the documentation.
-Matt
On Sat, Feb 6, 2010 at 9:28 AM, Agarwal, Shankar <sagarwal@ku.edu> wrote:
Hi,
I just "svn up" my working yt copy (I did not have the volume_rendering earlier). Do I have to "make clean; make" again.
I just tried to run the script...
http://casa.colorado.edu/~skillman/research_and_codes/assets/rot_evolve.txt
on my dataset. But I am getting this error...
Traceback (most recent call last): File "visual.py", line 6, in <module> from yt.mods import * File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module> import yt.lagos as lagos File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__.py", line 58, in <module> import yt.amr_utils as amr_utils ImportError: No module named amr_utils _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Hi Shankar, This thread is from when you installed yt on Steele several months ago. http://lists.spacepope.org/pipermail/yt-users-spacepope.org/2009-November/00... Looks like back then you had to swap out intel for GNU back then, too. If you do that now, and wipe/rebuild as I sent you, it should work out okay. Best, Matt On Sat, Feb 6, 2010 at 9:56 AM, Matthew Turk <matthewturk@gmail.com> wrote:
No, this looks more like there are issues with your compiler, and components of yt being compiled with Intel. Compiling yt with anything other than GNU is tricky.
You can try flushing it out with this:
find /autohome/u118/agarwa23/enzo1.5/src/yt/ -name "*.so" |xargs rm -v find /autohome/u118/agarwa23/enzo1.5/src/yt/ -name "*.o" |xargs rm -v
and then re-build. Make sure that if you are on a machine with modules you have the GNU modules loaded, not the Intel modules before this.
-Matt
On Sat, Feb 6, 2010 at 9:51 AM, Agarwal, Shankar <sagarwal@ku.edu> wrote:
Ok. But now I get this...
Traceback (most recent call last): File "visual.py", line 6, in <module> from yt.mods import * File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module> import yt.lagos as lagos File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__.py", line 66, in <module> import PointCombine ImportError: /autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/PointCombine.so: undefined symbol: _intel_fast_memset
Do you think my older version is somehow clashing with the new one?
Shankar
-----Original Message----- From: yt-users-bounces@lists.spacepope.org on behalf of Matthew Turk Sent: Sat 2/6/2010 11:46 AM To: Discussion of the yt analysis package Subject: Re: [yt-users] amr_utils
Hi Shankar,
Looks like you're inside an enzo svn checkout. To update your entire enzo+yt source tree (which, because yt is included via svn:externals) you should do:
/autohome/u118/agarwa23/enzo1.5/ svn up cd src/yt python2.6 setup.py build_ext -i
This will (in order) put you in the root enzo directory, update your subversion checkout (which may update your Enzo tree to reflect recent bug fixes and so on) of both Enzo+yt, and then make sure that all of the extensions -- of which amr_utils is one! -- are built. The last step is the most important, and you should probably run this every time you svn up yt. I'll make a note of this in the documentation.
-Matt
On Sat, Feb 6, 2010 at 9:28 AM, Agarwal, Shankar <sagarwal@ku.edu> wrote:
Hi,
I just "svn up" my working yt copy (I did not have the volume_rendering earlier). Do I have to "make clean; make" again.
I just tried to run the script...
http://casa.colorado.edu/~skillman/research_and_codes/assets/rot_evolve.txt
on my dataset. But I am getting this error...
Traceback (most recent call last): File "visual.py", line 6, in <module> from yt.mods import * File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module> import yt.lagos as lagos File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__.py", line 58, in <module> import yt.amr_utils as amr_utils ImportError: No module named amr_utils _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Yeah. I just checked that a few minutes back. I am following the steps there to rebuild yt. Looking good so far. Thanks. Shankar -----Original Message----- From: yt-users-bounces@lists.spacepope.org on behalf of Matthew Turk Sent: Sat 2/6/2010 12:02 PM To: Discussion of the yt analysis package Subject: Re: [yt-users] amr_utils Hi Shankar, This thread is from when you installed yt on Steele several months ago. http://lists.spacepope.org/pipermail/yt-users-spacepope.org/2009-November/00... Looks like back then you had to swap out intel for GNU back then, too. If you do that now, and wipe/rebuild as I sent you, it should work out okay. Best, Matt On Sat, Feb 6, 2010 at 9:56 AM, Matthew Turk <matthewturk@gmail.com> wrote:
No, this looks more like there are issues with your compiler, and components of yt being compiled with Intel. Compiling yt with anything other than GNU is tricky.
You can try flushing it out with this:
find /autohome/u118/agarwa23/enzo1.5/src/yt/ -name "*.so" |xargs rm -v find /autohome/u118/agarwa23/enzo1.5/src/yt/ -name "*.o" |xargs rm -v
and then re-build. Make sure that if you are on a machine with modules you have the GNU modules loaded, not the Intel modules before this.
-Matt
On Sat, Feb 6, 2010 at 9:51 AM, Agarwal, Shankar <sagarwal@ku.edu> wrote:
Ok. But now I get this...
Traceback (most recent call last): File "visual.py", line 6, in <module> from yt.mods import * File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module> import yt.lagos as lagos File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__.py", line 66, in <module> import PointCombine ImportError: /autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/PointCombine.so: undefined symbol: _intel_fast_memset
Do you think my older version is somehow clashing with the new one?
Shankar
-----Original Message----- From: yt-users-bounces@lists.spacepope.org on behalf of Matthew Turk Sent: Sat 2/6/2010 11:46 AM To: Discussion of the yt analysis package Subject: Re: [yt-users] amr_utils
Hi Shankar,
Looks like you're inside an enzo svn checkout. To update your entire enzo+yt source tree (which, because yt is included via svn:externals) you should do:
/autohome/u118/agarwa23/enzo1.5/ svn up cd src/yt python2.6 setup.py build_ext -i
This will (in order) put you in the root enzo directory, update your subversion checkout (which may update your Enzo tree to reflect recent bug fixes and so on) of both Enzo+yt, and then make sure that all of the extensions -- of which amr_utils is one! -- are built. The last step is the most important, and you should probably run this every time you svn up yt. I'll make a note of this in the documentation.
-Matt
On Sat, Feb 6, 2010 at 9:28 AM, Agarwal, Shankar <sagarwal@ku.edu> wrote:
Hi,
I just "svn up" my working yt copy (I did not have the volume_rendering earlier). Do I have to "make clean; make" again.
I just tried to run the script...
http://casa.colorado.edu/~skillman/research_and_codes/assets/rot_evolve.txt
on my dataset. But I am getting this error...
Traceback (most recent call last): File "visual.py", line 6, in <module> from yt.mods import * File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module> import yt.lagos as lagos File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__.py", line 58, in <module> import yt.amr_utils as amr_utils ImportError: No module named amr_utils _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Hi Matt, My modules are 1) java/1.6.0_14 2) mpfr/2.4.1 3) gcc/4.4.0 My yt build failed due to Mercurial... Downloading http://mercurial.selenic.com/release/mercurial-1.4.3.tar.gz Processing mercurial-1.4.3.tar.gz Running mercurial-1.4.3/setup.py -q bdist_egg --dist-dir /tmp/easy_install-lXCfn0/mercurial-1.4.3/egg-dist-tmp-SHK1v5 Traceback (most recent call last): File "/home/ba01/u118/agarwa23/enzo1.5/src/yt/doc/yt-x86_64/bin/easy_install-2.6", line 8, in <module> load_entry_point('setuptools==0.6c9', 'console_scripts', 'easy_install-2.6')() Should I set INST_HG = 0 ? INST_WXPYTHON = 1 so I will be installing wxPython INST_ZLIB = 1 so I will be installing zlib INST_HG = 1 so I will be installing Mercurial INST_TRAITS = 0 so I won't be installing Traits Shankar -----Original Message----- From: yt-users-bounces@lists.spacepope.org on behalf of Matthew Turk Sent: Sat 2/6/2010 12:02 PM To: Discussion of the yt analysis package Subject: Re: [yt-users] amr_utils Hi Shankar, This thread is from when you installed yt on Steele several months ago. http://lists.spacepope.org/pipermail/yt-users-spacepope.org/2009-November/00... Looks like back then you had to swap out intel for GNU back then, too. If you do that now, and wipe/rebuild as I sent you, it should work out okay. Best, Matt On Sat, Feb 6, 2010 at 9:56 AM, Matthew Turk <matthewturk@gmail.com> wrote:
No, this looks more like there are issues with your compiler, and components of yt being compiled with Intel. Compiling yt with anything other than GNU is tricky.
You can try flushing it out with this:
find /autohome/u118/agarwa23/enzo1.5/src/yt/ -name "*.so" |xargs rm -v find /autohome/u118/agarwa23/enzo1.5/src/yt/ -name "*.o" |xargs rm -v
and then re-build. Make sure that if you are on a machine with modules you have the GNU modules loaded, not the Intel modules before this.
-Matt
On Sat, Feb 6, 2010 at 9:51 AM, Agarwal, Shankar <sagarwal@ku.edu> wrote:
Ok. But now I get this...
Traceback (most recent call last): File "visual.py", line 6, in <module> from yt.mods import * File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module> import yt.lagos as lagos File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__.py", line 66, in <module> import PointCombine ImportError: /autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/PointCombine.so: undefined symbol: _intel_fast_memset
Do you think my older version is somehow clashing with the new one?
Shankar
-----Original Message----- From: yt-users-bounces@lists.spacepope.org on behalf of Matthew Turk Sent: Sat 2/6/2010 11:46 AM To: Discussion of the yt analysis package Subject: Re: [yt-users] amr_utils
Hi Shankar,
Looks like you're inside an enzo svn checkout. To update your entire enzo+yt source tree (which, because yt is included via svn:externals) you should do:
/autohome/u118/agarwa23/enzo1.5/ svn up cd src/yt python2.6 setup.py build_ext -i
This will (in order) put you in the root enzo directory, update your subversion checkout (which may update your Enzo tree to reflect recent bug fixes and so on) of both Enzo+yt, and then make sure that all of the extensions -- of which amr_utils is one! -- are built. The last step is the most important, and you should probably run this every time you svn up yt. I'll make a note of this in the documentation.
-Matt
On Sat, Feb 6, 2010 at 9:28 AM, Agarwal, Shankar <sagarwal@ku.edu> wrote:
Hi,
I just "svn up" my working yt copy (I did not have the volume_rendering earlier). Do I have to "make clean; make" again.
I just tried to run the script...
http://casa.colorado.edu/~skillman/research_and_codes/assets/rot_evolve.txt
on my dataset. But I am getting this error...
Traceback (most recent call last): File "visual.py", line 6, in <module> from yt.mods import * File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module> import yt.lagos as lagos File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__.py", line 58, in <module> import yt.amr_utils as amr_utils ImportError: No module named amr_utils _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Hi Shankar, Glad it succeeded! Don't worry about finishing up with hg. It's still optional. You should now just be able to use yt as before. :) Good luck, Matt On Feb 6, 2010, at 11:28 AM, "Agarwal, Shankar" <sagarwal@ku.edu> wrote:
Hi Matt,
My modules are
1) java/1.6.0_14 2) mpfr/2.4.1 3) gcc/4.4.0
My yt build failed due to Mercurial...
Downloading http://mercurial.selenic.com/release/ mercurial-1.4.3.tar.gz Processing mercurial-1.4.3.tar.gz Running mercurial-1.4.3/setup.py -q bdist_egg --dist-dir /tmp/ easy_install-lXCfn0/mercurial-1.4.3/egg-dist-tmp-SHK1v5 Traceback (most recent call last): File "/home/ba01/u118/agarwa23/enzo1.5/src/yt/doc/yt-x86_64/bin/ easy_install-2.6", line 8, in <module> load_entry_point('setuptools==0.6c9', 'console_scripts', 'easy_install-2.6')()
Should I set INST_HG = 0 ?
INST_WXPYTHON = 1 so I will be installing wxPython INST_ZLIB = 1 so I will be installing zlib INST_HG = 1 so I will be installing Mercurial INST_TRAITS = 0 so I won't be installing Traits
Shankar
-----Original Message----- From: yt-users-bounces@lists.spacepope.org on behalf of Matthew Turk Sent: Sat 2/6/2010 12:02 PM To: Discussion of the yt analysis package Subject: Re: [yt-users] amr_utils
Hi Shankar,
This thread is from when you installed yt on Steele several months ago.
http://lists.spacepope.org/pipermail/yt-users-spacepope.org/2009-November/00...
Looks like back then you had to swap out intel for GNU back then, too. If you do that now, and wipe/rebuild as I sent you, it should work out okay.
Best,
Matt
On Sat, Feb 6, 2010 at 9:56 AM, Matthew Turk <matthewturk@gmail.com> wrote:
No, this looks more like there are issues with your compiler, and components of yt being compiled with Intel. Â Compiling yt with anything other than GNU is tricky.
You can try flushing it out with this:
find /autohome/u118/agarwa23/enzo1.5/src/yt/ -name "*.so" |xargs rm -v find /autohome/u118/agarwa23/enzo1.5/src/yt/ -name "*.o" |xargs rm -v
and then re-build. Â Make sure that if you are on a machine with modules you have the GNU modules loaded, not the Intel modules before this.
-Matt
On Sat, Feb 6, 2010 at 9:51 AM, Agarwal, Shankar <sagarwal@ku.edu> wrote:
Ok. But now I get this...
Traceback (most recent call last):  File "visual.py", line 6, in <module>   from yt.mods import *  File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module>   import yt.lagos as lagos  File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__ .py", line 66, in <module>   import PointCombine ImportError: /autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/ PointCombine.so: undefined symbol: _intel_fast_memset
Do you think my older version is somehow clashing with the new one?
Shankar
-----Original Message----- From: yt-users-bounces@lists.spacepope.org on behalf of Matthew Turk Sent: Sat 2/6/2010 11:46 AM To: Discussion of the yt analysis package Subject: Re: [yt-users] amr_utils
Hi Shankar,
Looks like you're inside an enzo svn checkout. Â To update your entire enzo+yt source tree (which, because yt is included via svn:externals) you should do:
/autohome/u118/agarwa23/enzo1.5/ svn up cd src/yt python2.6 setup.py build_ext -i
This will (in order) put you in the root enzo directory, update your subversion checkout (which may update your Enzo tree to reflect recent bug fixes and so on) of both Enzo+yt, and then make sure that all of the extensions -- of which amr_utils is one! -- are built. Â The last step is the most important, and you should probably run this every time you svn up yt. Â I'll make a note of this in the documentat ion.
-Matt
On Sat, Feb 6, 2010 at 9:28 AM, Agarwal, Shankar <sagarwal@ku.edu> wrote:
Hi,
I just "svn up" my working yt copy (I did not have the volume_rendering earlier). Do I have to "make clean; make" again.
I just tried to run the script...
http://casa.colorado.edu/~skillman/research_and_codes/assets/rot_evolve.txt
on my dataset. But I am getting this error...
Traceback (most recent call last):  File "visual.py", line 6, in <module>   from yt.mods import *  File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", li ne 32, in <module>   import yt.lagos as lagos  File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init __.py", line 58, in <module>   import yt.amr_utils as amr_utils ImportError: No module named amr_utils _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
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Matt, Something going wrong with numpy. [agarwa23@tg-steele RD0001]$ python hop_yt.py yt.lagos INFO 2010-02-06 14:54:40,898 No HDF4 support yt.lagos WARNING 2010-02-06 14:54:40,981 No h5py. Data serialization disabled. Traceback (most recent call last): File "hop_yt.py", line 7, in <module> from yt.mods import * File "/autohome/u118/agarwa23/enzov1.5/src/yt/yt/mods.py", line 32, in <module> import yt.lagos as lagos File "/autohome/u118/agarwa23/enzov1.5/src/yt/yt/lagos/__init__.py", line 47, in <module> from yt.arraytypes import * File "/autohome/u118/agarwa23/enzov1.5/src/yt/yt/arraytypes.py", line 30, in <module> import numpy as na File "/home/ba01/u118/agarwa23/enzov1.5/src/yt/doc/yt-x86_64/lib/python2.6/site-packages/numpy/__init__.py", line 130, in <module> import add_newdocs File "/home/ba01/u118/agarwa23/enzov1.5/src/yt/doc/yt-x86_64/lib/python2.6/site-packages/numpy/add_newdocs.py", line 9, in <module> from lib import add_newdoc File "/home/ba01/u118/agarwa23/enzov1.5/src/yt/doc/yt-x86_64/lib/python2.6/site-packages/numpy/lib/__init__.py", line 13, in <module> from polynomial import * File "/home/ba01/u118/agarwa23/enzov1.5/src/yt/doc/yt-x86_64/lib/python2.6/site-packages/numpy/lib/polynomial.py", line 11, in <module> import numpy.core.numeric as NX AttributeError: 'module' object has no attribute 'core' -----Original Message----- From: yt-users-bounces@lists.spacepope.org on behalf of Matthew Turk Sent: Sat 2/6/2010 1:36 PM To: Discussion of the yt analysis package Subject: Re: [yt-users] amr_utils Hi Shankar, Glad it succeeded! Don't worry about finishing up with hg. It's still optional. You should now just be able to use yt as before. :) Good luck, Matt On Feb 6, 2010, at 11:28 AM, "Agarwal, Shankar" <sagarwal@ku.edu> wrote:
Hi Matt,
My modules are
1) java/1.6.0_14 2) mpfr/2.4.1 3) gcc/4.4.0
My yt build failed due to Mercurial...
Downloading http://mercurial.selenic.com/release/ mercurial-1.4.3.tar.gz Processing mercurial-1.4.3.tar.gz Running mercurial-1.4.3/setup.py -q bdist_egg --dist-dir /tmp/ easy_install-lXCfn0/mercurial-1.4.3/egg-dist-tmp-SHK1v5 Traceback (most recent call last): File "/home/ba01/u118/agarwa23/enzo1.5/src/yt/doc/yt-x86_64/bin/ easy_install-2.6", line 8, in <module> load_entry_point('setuptools==0.6c9', 'console_scripts', 'easy_install-2.6')()
Should I set INST_HG = 0 ?
INST_WXPYTHON = 1 so I will be installing wxPython INST_ZLIB = 1 so I will be installing zlib INST_HG = 1 so I will be installing Mercurial INST_TRAITS = 0 so I won't be installing Traits
Shankar
-----Original Message----- From: yt-users-bounces@lists.spacepope.org on behalf of Matthew Turk Sent: Sat 2/6/2010 12:02 PM To: Discussion of the yt analysis package Subject: Re: [yt-users] amr_utils
Hi Shankar,
This thread is from when you installed yt on Steele several months ago.
http://lists.spacepope.org/pipermail/yt-users-spacepope.org/2009-November/00...
Looks like back then you had to swap out intel for GNU back then, too. If you do that now, and wipe/rebuild as I sent you, it should work out okay.
Best,
Matt
On Sat, Feb 6, 2010 at 9:56 AM, Matthew Turk <matthewturk@gmail.com> wrote:
No, this looks more like there are issues with your compiler, and components of yt being compiled with Intel. Â Compiling yt with anything other than GNU is tricky.
You can try flushing it out with this:
find /autohome/u118/agarwa23/enzo1.5/src/yt/ -name "*.so" |xargs rm -v find /autohome/u118/agarwa23/enzo1.5/src/yt/ -name "*.o" |xargs rm -v
and then re-build. Â Make sure that if you are on a machine with modules you have the GNU modules loaded, not the Intel modules before this.
-Matt
On Sat, Feb 6, 2010 at 9:51 AM, Agarwal, Shankar <sagarwal@ku.edu> wrote:
Ok. But now I get this...
Traceback (most recent call last):  File "visual.py", line 6, in <module>   from yt.mods import *  File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", line 32, in <module>   import yt.lagos as lagos  File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init__ .py", line 66, in <module>   import PointCombine ImportError: /autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/ PointCombine.so: undefined symbol: _intel_fast_memset
Do you think my older version is somehow clashing with the new one?
Shankar
-----Original Message----- From: yt-users-bounces@lists.spacepope.org on behalf of Matthew Turk Sent: Sat 2/6/2010 11:46 AM To: Discussion of the yt analysis package Subject: Re: [yt-users] amr_utils
Hi Shankar,
Looks like you're inside an enzo svn checkout. Â To update your entire enzo+yt source tree (which, because yt is included via svn:externals) you should do:
/autohome/u118/agarwa23/enzo1.5/ svn up cd src/yt python2.6 setup.py build_ext -i
This will (in order) put you in the root enzo directory, update your subversion checkout (which may update your Enzo tree to reflect recent bug fixes and so on) of both Enzo+yt, and then make sure that all of the extensions -- of which amr_utils is one! -- are built. Â The last step is the most important, and you should probably run this every time you svn up yt. Â I'll make a note of this in the documentat ion.
-Matt
On Sat, Feb 6, 2010 at 9:28 AM, Agarwal, Shankar <sagarwal@ku.edu> wrote:
Hi,
I just "svn up" my working yt copy (I did not have the volume_rendering earlier). Do I have to "make clean; make" again.
I just tried to run the script...
http://casa.colorado.edu/~skillman/research_and_codes/assets/rot_evolve.txt
on my dataset. But I am getting this error...
Traceback (most recent call last):  File "visual.py", line 6, in <module>   from yt.mods import *  File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/mods.py", li ne 32, in <module>   import yt.lagos as lagos  File "/autohome/u118/agarwa23/enzo1.5/src/yt/yt/lagos/__init __.py", line 58, in <module>   import yt.amr_utils as amr_utils ImportError: No module named amr_utils _______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
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Agarwal, Shankar -
Matthew Turk