How to fix this problem
I'm attempting to install yt version 2.6 on a MacBook Pro running Mac OS X 10.9. In executing the install script, install_script.sh, I get the following output: users-MacBook-Pro:yt_2.6 user$ bash install_script.sh ======================================================================== Hi there! This is the yt installation script. We're going to download some stuff and install it to create a self-contained, isolated environment for yt to run within. Inside the installation script you can set a few variables. Here's what they're currently set to -- you can hit Ctrl-C and edit the values in the script if you aren't such a fan. INST_ZLIB = 1 so I will be installing zlib INST_BZLIB = 1 so I will be installing bzlib INST_PNG = 1 so I will be installing libpng INST_FTYPE = 1 so I will be installing freetype2 INST_SQLITE3 = 1 so I will be installing SQLite3 INST_HG = 1 so I will be installing Mercurial INST_ENZO = 0 so I won't be checking out Enzo INST_PYX = 0 so I won't be installing PyX INST_SCIPY = 0 so I won't be installing scipy INST_0MQ = 1 so I will be installing ZeroMQ INST_ROCKSTAR = 0 so I won't be installing Rockstar HDF5_DIR is not set, so I will be installing HDF5 Installation will be to /Users/user/yt_2.6/yt-x86_64 and I'll be logging the installation in /Users/user/yt_2.6/yt-x86_64/yt_install.log I think that about wraps it up. If you want to continue, hit enter. If you'd rather stop, maybe think things over, even grab a sandwich, hit Ctrl-C. Looks like you're running on Mac OSX. NOTE: you must have the Xcode command line tools installed. The instructions for obtaining these tools varies according to your exact OS version. On older versions of OS X, you must register for an account on the apple developer tools website: https://developer.apple.com/downloads to obtain the download link. We have gathered some additional instructions for each version of OS X below. If you have trouble installing yt after following these instructions, don't hesitate to contact the yt user's e-mail list. You can see which version of OSX you are running by clicking 'About This Mac' in the apple menu on the left hand side of menu bar. We're assuming that you've installed all operating system updates; if you have an older version, we suggest running software update and installing all available updates. OS X 10.5.8: search for and download Xcode 3.1.4 from the Apple developer tools website. OS X 10.6.8: search for and download Xcode 3.2 from the Apple developer tools website. You can either download the Xcode 3.2.2 Developer Tools package (744 MB) and then use Software Update to update to XCode 3.2.6 or alternatively, you can download the Xcode 3.2.6/iOS SDK bundle (4.1 GB). OS X 10.7.5: download Xcode 4.2 from the mac app store (search for Xcode). Alternatively, download the Xcode command line tools from the Apple developer tools website. OS X 10.8.4 and 10.9: download Xcode 5.02 from the mac app store. (search for Xcode). Additionally, you will have to manually install the Xcode command line tools. For OS X 10.8, see: http://stackoverflow.com/questions/9353444 For OS X 10.9, the command line tools can be installed with the following command: xcode-select --install ======================================================================== [hit enter] Awesome! Here we go. Using wget Using shasum -a 512 Downloading xray_emissivity.h5 from yt-project.org 2013-12-01 16:49:21 URL:http://yt-project.org/data/xray_emissivity.h5 [2147728/2147728] -> "xray_emissivity.h5" [1] Downloading hdf5-1.8.11.tar.gz from yt-project.org 2013-12-01 16:49:25 URL:http://yt-project.org/dependencies/hdf5-1.8.11.tar.gz [8088169/8088169] -> "hdf5-1.8.11.tar.gz" [1] Downloading zlib-1.2.8.tar.gz from yt-project.org 2013-12-01 16:49:25 URL:http://yt-project.org/dependencies/zlib-1.2.8.tar.gz [571091/571091] -> "zlib-1.2.8.tar.gz" [1] Downloading bzip2-1.0.6.tar.gz from yt-project.org 2013-12-01 16:49:26 URL:http://yt-project.org/dependencies/bzip2-1.0.6.tar.gz [782025/782025] -> "bzip2-1.0.6.tar.gz" [1] Downloading libpng-1.6.3.tar.gz from yt-project.org 2013-12-01 16:49:27 URL:http://yt-project.org/dependencies/libpng-1.6.3.tar.gz [1299272/1299272] -> "libpng-1.6.3.tar.gz" [1] Downloading freetype-2.4.12.tar.gz from yt-project.org 2013-12-01 16:49:29 URL:http://yt-project.org/dependencies/freetype-2.4.12.tar.gz [2117909/2117909] -> "freetype-2.4.12.tar.gz" [1] Downloading sqlite-autoconf-3071700.tar.gz from yt-project.org 2013-12-01 16:49:30 URL:http://yt-project.org/dependencies/sqlite-autoconf-3071700.tar.gz [1876108/1876108] -> "sqlite-autoconf-3071700.tar.gz" [1] Downloading zeromq-3.2.4.tar.gz from yt-project.org 2013-12-01 16:49:31 URL:http://yt-project.org/dependencies/zeromq-3.2.4.tar.gz [2083123/2083123] -> "zeromq-3.2.4.tar.gz" [1] Downloading pyzmq-13.1.0.tar.gz from yt-project.org 2013-12-01 16:49:32 URL:http://yt-project.org/dependencies/pyzmq-13.1.0.tar.gz [838742/838742] -> "pyzmq-13.1.0.tar.gz" [1] Downloading tornado-3.1.tar.gz from yt-project.org 2013-12-01 16:49:33 URL:http://yt-project.org/dependencies/tornado-3.1.tar.gz [374189/374189] -> "tornado-3.1.tar.gz" [1] Downloading Python-2.7.6.tgz from yt-project.org 2013-12-01 16:49:37 URL:http://yt-project.org/dependencies/Python-2.7.6.tgz [14725931/14725931] -> "Python-2.7.6.tgz" [1] Downloading numpy-1.7.1.tar.gz from yt-project.org 2013-12-01 16:49:38 URL:http://yt-project.org/dependencies/numpy-1.7.1.tar.gz [2838240/2838240] -> "numpy-1.7.1.tar.gz" [1] Downloading matplotlib-1.3.0.tar.gz from yt-project.org 2013-12-01 16:49:48 URL:http://yt-project.org/dependencies/matplotlib-1.3.0.tar.gz [42098180/42098180] -> "matplotlib-1.3.0.tar.gz" [1] Downloading mercurial-2.8.tar.gz from yt-project.org 2013-12-01 16:49:51 URL:http://yt-project.org/dependencies/mercurial-2.8.tar.gz [3833669/3833669] -> "mercurial-2.8.tar.gz" [1] Downloading ipython-1.1.0.tar.gz from yt-project.org 2013-12-01 16:49:54 URL:http://yt-project.org/dependencies/ipython-1.1.0.tar.gz [8658909/8658909] -> "ipython-1.1.0.tar.gz" [1] Downloading h5py-2.1.3.tar.gz from yt-project.org 2013-12-01 16:49:55 URL:http://yt-project.org/dependencies/h5py-2.1.3.tar.gz [988478/988478] -> "h5py-2.1.3.tar.gz" [1] Downloading Cython-0.19.1.tar.gz from yt-project.org 2013-12-01 16:49:57 URL:http://yt-project.org/dependencies/Cython-0.19.1.tar.gz [1384406/1384406] -> "Cython-0.19.1.tar.gz" [1] Downloading reason-js-20120623.zip from yt-project.org 2013-12-01 16:50:01 URL:http://yt-project.org/dependencies/reason-js-20120623.zip [6786705/6786705] -> "reason-js-20120623.zip" [1] Downloading Forthon-0.8.11.tar.gz from yt-project.org 2013-12-01 16:50:01 URL:http://yt-project.org/dependencies/Forthon-0.8.11.tar.gz [89277/89277] -> "Forthon-0.8.11.tar.gz" [1] Downloading nose-1.3.0.tar.gz from yt-project.org 2013-12-01 16:50:02 URL:http://yt-project.org/dependencies/nose-1.3.0.tar.gz [404909/404909] -> "nose-1.3.0.tar.gz" [1] Downloading python-hglib-1.0.tar.gz from yt-project.org 2013-12-01 16:50:02 URL:http://yt-project.org/dependencies/python-hglib-1.0.tar.gz [27833/27833] -> "python-hglib-1.0.tar.gz" [1] Downloading sympy-0.7.3.tar.gz from yt-project.org 2013-12-01 16:50:06 URL:http://yt-project.org/dependencies/sympy-0.7.3.tar.gz [6379972/6379972] -> "sympy-0.7.3.tar.gz" [1] Downloading rockstar-0.99.6.tar.gz from yt-project.org 2013-12-01 16:50:06 URL:http://yt-project.org/dependencies/rockstar-0.99.6.tar.gz [121874/121874] -> "rockstar-0.99.6.tar.gz" [1] Installing BZLIB Installing ZLIB Installing PNG Installing FreeType2 Installing HDF5 Installing SQLite3 Installing Python. This may take a while, but don't worry. yt loves you. Installing mercurial-2.8 ******************************************** FAILURE REPORT: ******************************************** running build_mo creating mercurial/locale creating mercurial/locale/da creating mercurial/locale/da/LC_MESSAGES generating mercurial/locale/da/LC_MESSAGES/hg.mo from i18n/da.po msgfmt -v -o mercurial/locale/da/LC_MESSAGES/hg.mo i18n/da.po -c dyld: Library not loaded: /Applications/Octave.app/Contents/Resources/lib/libgettextsrc-0.18.dylib Referenced from: /Applications/Octave3.4.0/Octave.app/Contents/Resources/bin/msgfmt Reason: image not found error: command 'msgfmt' terminated by signal 5 ******************************************** ******************************************** Failure. Check /Users/user/yt_2.6/yt-x86_64/yt_install.log. The last 10 lines are above. How do I fix the above failure? Any advice? Sam Dupree.
Hi Sam,
On Sun, Dec 1, 2013 at 8:26 PM, Samuel Dupree
I'm attempting to install yt version 2.6 on a MacBook Pro running Mac OS X 10.9. In executing the install script, install_script.sh, I get the following output:
users-MacBook-Pro:yt_2.6 user$ bash install_script.sh
[snip]
Installing mercurial-2.8 ******************************************** FAILURE REPORT: ********************************************
running build_mo creating mercurial/locale creating mercurial/locale/da creating mercurial/locale/da/LC_MESSAGES generating mercurial/locale/da/LC_MESSAGES/hg.mo from i18n/da.po msgfmt -v -o mercurial/locale/da/LC_MESSAGES/hg.mo i18n/da.po -c dyld: Library not loaded: /Applications/Octave.app/Contents/Resources/lib/libgettextsrc-0.18.dylib Referenced from: /Applications/Octave3.4.0/Octave.app/Contents/Resources/bin/msgfmt Reason: image not found error: command 'msgfmt' terminated by signal 5
******************************************** ******************************************** Failure. Check /Users/user/yt_2.6/yt-x86_64/yt_install.log. The last 10 lines are above.
How do I fix the above failure? Any advice?
Wow, I've never seen this before. By any chance, do you have anything in your env in any DYLD variables? What's the output of: env | grep DYLD Thanks, Matt
Sam Dupree.
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participants (2)
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Matthew Turk
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Samuel Dupree