Hi Daniel, Thanks for telling us about this. We have a pull request https://bitbucket.org/yt_analysis/yt/pull-requests/1768/improve-check_for_op... open that should allow the install script to work normally when CC="ccache <compiler>" in the future. Best, Andrew On Thu, Sep 24, 2015 at 12:47 PM, Schwen (Non-US), Daniel < daniel.schwen@inl.gov> wrote:
Yeah, it built and installed. I can call '/opt/moose/miniconda/bin/yt'. It craps out because it does not find hdf5. I must have missed that dependency. Thanks for your help so far! Daniel
I think i'm having success with
sudo -E CC=clang CFLAGS="-I/opt/local/include" LDFLAGS="-L/opt/local/lib" python setup.py develop
On Thu, Sep 24, 2015 at 1:43 PM, Schwen (Non-US), Daniel
wrote: and:
[10][schwd][~/Downloads/yt-hg]> CC=clang python test.py compiler is: clang filename is: test.c True
On Thu, Sep 24, 2015 at 1:42 PM, Schwen (Non-US), Daniel
wrote: and:
[10][schwd][~/Downloads/yt-hg]> CC=gcc python test.py compiler is: gcc filename is: test.c False [10][schwd][~/Downloads/yt-hg]> which gcc /opt/moose/gcc_4.9.1/bin/gcc
On Thu, Sep 24, 2015 at 1:41 PM, Schwen (Non-US), Daniel
wrote: compiler is: ccache clang filename is: test.c Traceback (most recent call last): File "test.py", line 47, in <module> print check_for_openmp() File "test.py", line 37, in check_for_openmp stdout=fnull, stderr=fnull) File "/opt/moose/miniconda/lib/python2.7/subprocess.py", line 522, in call return Popen(*popenargs, **kwargs).wait() File "/opt/moose/miniconda/lib/python2.7/subprocess.py", line 710, in __init__ errread, errwrite) File "/opt/moose/miniconda/lib/python2.7/subprocess.py", line 1335, in _execute_child raise child_exception OSError: [Errno 2] No such file or directory
On Thu, Sep 24, 2015 at 1:32 PM, Andrew Myers
wrote: Hi Daniel,
Could you try running this python script using the same python you're trying to install yt with? Does it give you some output, or does it fail with the same error message?
Thanks, Andrew
On Thu, Sep 24, 2015 at 12:05 PM, Andrew Myers
wrote: > > Hello yt users, > > I'm working with Daniel Schwen of the MOOSE team to install yt from > source. He is running OS X Yosemite, and trying to install yt over a > miniconda python. After cloning my yt repository, the install On Thu, Sep 24, 2015 at 1:44 PM, Schwen (Non-US), Daniel
wrote: script fails > with the attached traceback. Does anyone have any ideas? > > Thanks, > Andrew > > [10][schwd][~/Downloads/yt-hg]> CFLAGS="-I/opt/local/include" > LDFLAGS="-L/opt/local/lib" python setup.py develop > > /opt/moose/miniconda/lib/python2.7/site-packages/setuptools-18.3.2-py2.7.egg/setuptools/dist.py:285: > UserWarning: Normalizing '3.3-dev' to '3.3.dev0' > non-existing path in 'yt/utilities/spatial': 'yt/utilities/spatial/tests' > Traceback (most recent call last): > File "setup.py", line 227, in <module> > setup_package() > File "setup.py", line 222, in setup_package > cmdclass={'build_py': my_build_py, 'build_src': my_build_src}, > File > "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/core.py", > line 135, in setup > config = configuration() > File "setup.py", line 178, in configuration > config.add_subpackage('yt', 'yt') > File > "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py", > line 966, in add_subpackage > caller_level = 2) > File > "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py", > line 935, in get_subpackage > caller_level = caller_level + 1) > File > "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py", > line 872, in _get_configuration_from_setup_py > config = setup_module.configuration(*args) > File "yt/setup.py", line 18, in configuration > config.add_subpackage('utilities') > File > "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py", > line 966, in add_subpackage > caller_level = 2) > File > "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py", > line 935, in get_subpackage > caller_level = caller_level + 1) > File > "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py", > line 872, in _get_configuration_from_setup_py > config = setup_module.configuration(*args) > File "yt/utilities/setup.py", line 161, in configuration > config.add_subpackage("lib") > File > "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py", > line 966, in add_subpackage > caller_level = 2) > File > "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py", > line 935, in get_subpackage > caller_level = caller_level + 1) > File > "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py", > line 872, in _get_configuration_from_setup_py > config = setup_module.configuration(*args) > File "yt/utilities/lib/setup.py", line 57, in configuration > if check_for_openmp() == True: > File "yt/utilities/lib/setup.py", line 37, in check_for_openmp > stdout=fnull, stderr=fnull) > File "/opt/moose/miniconda/lib/python2.7/subprocess.py", line 522, in > call > return Popen(*popenargs, **kwargs).wait() > File "/opt/moose/miniconda/lib/python2.7/subprocess.py", line 710, in > __init__ > errread, errwrite) > File "/opt/moose/miniconda/lib/python2.7/subprocess.py", line 1335, > in _execute_child > raise child_exception > OSError: [Errno 2] No such file or directory
-- Daniel Schwen, PhD Staff Scientist, Fuels Modeling & Simulation
Idaho National Laboratory P.O. Box 1625, MS 3840 Idaho Falls, ID 83415
Email: daniel.schwen@inl.gov Phone: (208) 526-4880
-- Daniel Schwen, PhD Staff Scientist, Fuels Modeling & Simulation
Idaho National Laboratory P.O. Box 1625, MS 3840 Idaho Falls, ID 83415
Email: daniel.schwen@inl.gov Phone: (208) 526-4880
-- Daniel Schwen, PhD Staff Scientist, Fuels Modeling & Simulation
Idaho National Laboratory P.O. Box 1625, MS 3840 Idaho Falls, ID 83415
Email: daniel.schwen@inl.gov Phone: (208) 526-4880
-- Daniel Schwen, PhD Staff Scientist, Fuels Modeling & Simulation
Idaho National Laboratory P.O. Box 1625, MS 3840 Idaho Falls, ID 83415
Email: daniel.schwen@inl.gov Phone: (208) 526-4880
-- Daniel Schwen, PhD Staff Scientist, Fuels Modeling & Simulation
Idaho National Laboratory P.O. Box 1625, MS 3840 Idaho Falls, ID 83415
Email: daniel.schwen@inl.gov Phone: (208) 526-4880
participants (1)
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Andrew Myers