Hi all, We're proud to release yt version 2.5.3. This is a scheduled point release that includes all bug fixes identified and fixed since the release of 2.5.2 on May 1. Additions, changes and bug fixes include: * yt can now export to RADMC3D * Athena frontend now supports Static Mesh Refinement and units ( http://hub.yt-project.org/nb/7l1zua ) * PlotWindows now have a set_font function and a new default font setting * Colorbars less likely to extend off the edge of a PlotWindow * Clumps overplotted on PlotWindows are now correctly contoured * Allsky projections and HEALpix camera now correctly use four channels (RGBA) * Many fixes to light ray and profiles for integrated cosmological analysis * Improvements to OpenMP compilation * Typo in value for km_per_pc (not used elsewhere in the code base) has been fixed * Enable parallel IPython notebook sessions ( http://hub.yt-project.org/nb/qgn19h ) * Change (~1e-6) to particle_density deposition, enabling it to be used by FLASH and other frontends * Addition of is_root function for convenience in parallel analysis sessions * Additions to Orion particle reader * Fix long-standing bug for plotting arrays with range of zero * Fixing TotalMass for case when particles not present * Fixing the density threshold or HOP and pHOP to match the merger tree * Reason can now plot with latest plot window * Adding option to have interpolation based on non-uniform bins in interpolator code * Issues with VelocityMagnitude and aliases with velo have been corrected in the FLASH frontend * Halo radii are calculated correctly for domains that do not start at 0,0,0. * Halo mass function now works for non-Enzo frontends. * Bug fixes for directory creation, typos in docstrings If you are using the stable branch of yt from an installation script, you can upgrade using "yt update" or "yt update --all" to upgrade your full dependency stack. If you are using the development branch, you may already have these fixes. A tarball of this release has been uploaded to the Python Package Index (PyPI). This release includes a total of over 150 changesets, contributed over the course of nearly 40 pull requests by over a dozen individuals. The next scheduled release will be on July 1, and will be version 2.6. We are hoping to include a unification of the Boxlib frontends, compatibility with Python 3 (and embedding inside Blender) and other usual improvements to the yt codebase. Documentation for this release can be found at: http://yt-project.org/docs/dev/ Thanks very much, Matt, on behalf of the yt development team
Great! I've repackaged this release in my Ubuntu PPA ( http://ppa.launchpad.net/kuhlen/ppa/ubuntu). Btw, I've now also copied the packages over to Quantal Quetzal (12.10) and Raring Ringtail (13.04), so they should work there too. However, since I'm still on 12.04 I haven't been able to try them out myself. Please report back if you encounter problems. Mike On Mon, Jun 3, 2013 at 1:42 PM, Matthew Turk <matthewturk@gmail.com> wrote:
Hi all,
We're proud to release yt version 2.5.3. This is a scheduled point release that includes all bug fixes identified and fixed since the release of 2.5.2 on May 1.
Additions, changes and bug fixes include:
* yt can now export to RADMC3D * Athena frontend now supports Static Mesh Refinement and units ( http://hub.yt-project.org/nb/7l1zua ) * PlotWindows now have a set_font function and a new default font setting * Colorbars less likely to extend off the edge of a PlotWindow * Clumps overplotted on PlotWindows are now correctly contoured * Allsky projections and HEALpix camera now correctly use four channels (RGBA) * Many fixes to light ray and profiles for integrated cosmological analysis * Improvements to OpenMP compilation * Typo in value for km_per_pc (not used elsewhere in the code base) has been fixed * Enable parallel IPython notebook sessions ( http://hub.yt-project.org/nb/qgn19h ) * Change (~1e-6) to particle_density deposition, enabling it to be used by FLASH and other frontends * Addition of is_root function for convenience in parallel analysis sessions * Additions to Orion particle reader * Fix long-standing bug for plotting arrays with range of zero * Fixing TotalMass for case when particles not present * Fixing the density threshold or HOP and pHOP to match the merger tree * Reason can now plot with latest plot window * Adding option to have interpolation based on non-uniform bins in interpolator code * Issues with VelocityMagnitude and aliases with velo have been corrected in the FLASH frontend * Halo radii are calculated correctly for domains that do not start at 0,0,0. * Halo mass function now works for non-Enzo frontends. * Bug fixes for directory creation, typos in docstrings
If you are using the stable branch of yt from an installation script, you can upgrade using "yt update" or "yt update --all" to upgrade your full dependency stack. If you are using the development branch, you may already have these fixes. A tarball of this release has been uploaded to the Python Package Index (PyPI).
This release includes a total of over 150 changesets, contributed over the course of nearly 40 pull requests by over a dozen individuals. The next scheduled release will be on July 1, and will be version 2.6. We are hoping to include a unification of the Boxlib frontends, compatibility with Python 3 (and embedding inside Blender) and other usual improvements to the yt codebase.
Documentation for this release can be found at:
http://yt-project.org/docs/dev/
Thanks very much,
Matt, on behalf of the yt development team _______________________________________________ yt-dev mailing list yt-dev@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
-- ------------------------------ Dr. Michael Kuhlen Theoretical Astrophysics Center UC Berkeley
Hey Mike, Looks like it fails on 13.04. FWIW, the serial hdf5 package appears to be called libhdf5-7. If anyone else has success, let me know, it's possible I'm doing something silly. -Nathan $ sudo apt-get install yt Reading package lists... Done Building dependency tree Reading state information... Done Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: yt : Depends: libhdf5-serial-1.8.4 but it is not installable Recommends: python-matplotlib (>= 1.1.0) but it is not going to be installed Recommends: python-pyx (>= 0.11.1) but it is not going to be installed Recommends: ipython (>= 0.12.1) but it is not going to be installed Recommends: ipython-notebook (>= 0.12.1) but it is not going to be installed Recommends: forthon (>= 0.8.11) but it is not going to be installed E: Unable to correct problems, you have held broken packages. $ apt-cache search libhdf5 libhdf5-7 - Hierarchical Data Format 5 (HDF5) - runtime files - serial version libhdf5-7-dbg - Hierarchical Data Format 5 (HDF5) - Debug package libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial version libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 version libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 version libhdf5-mpich2-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich2 Debug package libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 version libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI version libhdf5-openmpi-7-dbg - Hierarchical Data Format 5 (HDF5) - OpenMPI Debug package libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files - OpenMPI version libhdf5-serial-dev - Hierarchical Data Format 5 (HDF5) - development files - transitionnal package On Mon, Jun 3, 2013 at 9:54 PM, Michael Kuhlen <mqk@astro.berkeley.edu>wrote:
Great! I've repackaged this release in my Ubuntu PPA ( http://ppa.launchpad.net/kuhlen/ppa/ubuntu).
Btw, I've now also copied the packages over to Quantal Quetzal (12.10) and Raring Ringtail (13.04), so they should work there too. However, since I'm still on 12.04 I haven't been able to try them out myself. Please report back if you encounter problems.
Mike
On Mon, Jun 3, 2013 at 1:42 PM, Matthew Turk <matthewturk@gmail.com>wrote:
Hi all,
We're proud to release yt version 2.5.3. This is a scheduled point release that includes all bug fixes identified and fixed since the release of 2.5.2 on May 1.
Additions, changes and bug fixes include:
* yt can now export to RADMC3D * Athena frontend now supports Static Mesh Refinement and units ( http://hub.yt-project.org/nb/7l1zua ) * PlotWindows now have a set_font function and a new default font setting * Colorbars less likely to extend off the edge of a PlotWindow * Clumps overplotted on PlotWindows are now correctly contoured * Allsky projections and HEALpix camera now correctly use four channels (RGBA) * Many fixes to light ray and profiles for integrated cosmological analysis * Improvements to OpenMP compilation * Typo in value for km_per_pc (not used elsewhere in the code base) has been fixed * Enable parallel IPython notebook sessions ( http://hub.yt-project.org/nb/qgn19h ) * Change (~1e-6) to particle_density deposition, enabling it to be used by FLASH and other frontends * Addition of is_root function for convenience in parallel analysis sessions * Additions to Orion particle reader * Fix long-standing bug for plotting arrays with range of zero * Fixing TotalMass for case when particles not present * Fixing the density threshold or HOP and pHOP to match the merger tree * Reason can now plot with latest plot window * Adding option to have interpolation based on non-uniform bins in interpolator code * Issues with VelocityMagnitude and aliases with velo have been corrected in the FLASH frontend * Halo radii are calculated correctly for domains that do not start at 0,0,0. * Halo mass function now works for non-Enzo frontends. * Bug fixes for directory creation, typos in docstrings
If you are using the stable branch of yt from an installation script, you can upgrade using "yt update" or "yt update --all" to upgrade your full dependency stack. If you are using the development branch, you may already have these fixes. A tarball of this release has been uploaded to the Python Package Index (PyPI).
This release includes a total of over 150 changesets, contributed over the course of nearly 40 pull requests by over a dozen individuals. The next scheduled release will be on July 1, and will be version 2.6. We are hoping to include a unification of the Boxlib frontends, compatibility with Python 3 (and embedding inside Blender) and other usual improvements to the yt codebase.
Documentation for this release can be found at:
http://yt-project.org/docs/dev/
Thanks very much,
Matt, on behalf of the yt development team _______________________________________________ yt-dev mailing list yt-dev@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
-- ------------------------------
Dr. Michael Kuhlen Theoretical Astrophysics Center UC Berkeley
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
Hi Nathan Thanks for the report. Going from 12.04 to 12.10 the HDF5 library was apparently renamed to libhdf5-7, instead of libhdf5-serial-1.8.4. I've added libhdf5-7 as an alternative install dependency. The package is rebuilding on launchpad right now. Could you please try again once it's done (probably in a couple of hours)? Thanks, Mike On Mon, Jun 3, 2013 at 10:05 PM, Nathan Goldbaum <nathan12343@gmail.com>wrote:
Hey Mike,
Looks like it fails on 13.04. FWIW, the serial hdf5 package appears to be called libhdf5-7. If anyone else has success, let me know, it's possible I'm doing something silly.
-Nathan
$ sudo apt-get install yt Reading package lists... Done Building dependency tree Reading state information... Done Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation:
The following packages have unmet dependencies: yt : Depends: libhdf5-serial-1.8.4 but it is not installable Recommends: python-matplotlib (>= 1.1.0) but it is not going to be installed Recommends: python-pyx (>= 0.11.1) but it is not going to be installed Recommends: ipython (>= 0.12.1) but it is not going to be installed Recommends: ipython-notebook (>= 0.12.1) but it is not going to be installed Recommends: forthon (>= 0.8.11) but it is not going to be installed E: Unable to correct problems, you have held broken packages.
$ apt-cache search libhdf5 libhdf5-7 - Hierarchical Data Format 5 (HDF5) - runtime files - serial version libhdf5-7-dbg - Hierarchical Data Format 5 (HDF5) - Debug package libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial version libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 version libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 version libhdf5-mpich2-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich2 Debug package libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 version libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI version libhdf5-openmpi-7-dbg - Hierarchical Data Format 5 (HDF5) - OpenMPI Debug package libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files - OpenMPI version libhdf5-serial-dev - Hierarchical Data Format 5 (HDF5) - development files - transitionnal package
On Mon, Jun 3, 2013 at 9:54 PM, Michael Kuhlen <mqk@astro.berkeley.edu>wrote:
Great! I've repackaged this release in my Ubuntu PPA ( http://ppa.launchpad.net/kuhlen/ppa/ubuntu).
Btw, I've now also copied the packages over to Quantal Quetzal (12.10) and Raring Ringtail (13.04), so they should work there too. However, since I'm still on 12.04 I haven't been able to try them out myself. Please report back if you encounter problems.
Mike
On Mon, Jun 3, 2013 at 1:42 PM, Matthew Turk <matthewturk@gmail.com>wrote:
Hi all,
We're proud to release yt version 2.5.3. This is a scheduled point release that includes all bug fixes identified and fixed since the release of 2.5.2 on May 1.
Additions, changes and bug fixes include:
* yt can now export to RADMC3D * Athena frontend now supports Static Mesh Refinement and units ( http://hub.yt-project.org/nb/7l1zua ) * PlotWindows now have a set_font function and a new default font setting * Colorbars less likely to extend off the edge of a PlotWindow * Clumps overplotted on PlotWindows are now correctly contoured * Allsky projections and HEALpix camera now correctly use four channels (RGBA) * Many fixes to light ray and profiles for integrated cosmological analysis * Improvements to OpenMP compilation * Typo in value for km_per_pc (not used elsewhere in the code base) has been fixed * Enable parallel IPython notebook sessions ( http://hub.yt-project.org/nb/qgn19h ) * Change (~1e-6) to particle_density deposition, enabling it to be used by FLASH and other frontends * Addition of is_root function for convenience in parallel analysis sessions * Additions to Orion particle reader * Fix long-standing bug for plotting arrays with range of zero * Fixing TotalMass for case when particles not present * Fixing the density threshold or HOP and pHOP to match the merger tree * Reason can now plot with latest plot window * Adding option to have interpolation based on non-uniform bins in interpolator code * Issues with VelocityMagnitude and aliases with velo have been corrected in the FLASH frontend * Halo radii are calculated correctly for domains that do not start at 0,0,0. * Halo mass function now works for non-Enzo frontends. * Bug fixes for directory creation, typos in docstrings
If you are using the stable branch of yt from an installation script, you can upgrade using "yt update" or "yt update --all" to upgrade your full dependency stack. If you are using the development branch, you may already have these fixes. A tarball of this release has been uploaded to the Python Package Index (PyPI).
This release includes a total of over 150 changesets, contributed over the course of nearly 40 pull requests by over a dozen individuals. The next scheduled release will be on July 1, and will be version 2.6. We are hoping to include a unification of the Boxlib frontends, compatibility with Python 3 (and embedding inside Blender) and other usual improvements to the yt codebase.
Documentation for this release can be found at:
http://yt-project.org/docs/dev/
Thanks very much,
Matt, on behalf of the yt development team _______________________________________________ yt-dev mailing list yt-dev@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
-- ------------------------------
Dr. Michael Kuhlen Theoretical Astrophysics Center UC Berkeley
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
-- ------------------------------ Dr. Michael Kuhlen Theoretical Astrophysics Center UC Berkeley
Hey Mike, I'm still seeing the same error from last night. Should I wait a bit longer for the package to rebuild? Nathan On Tuesday, June 4, 2013, Michael Kuhlen wrote:
Hi Nathan
Thanks for the report. Going from 12.04 to 12.10 the HDF5 library was apparently renamed to libhdf5-7, instead of libhdf5-serial-1.8.4. I've added libhdf5-7 as an alternative install dependency. The package is rebuilding on launchpad right now. Could you please try again once it's done (probably in a couple of hours)?
Thanks,
Mike
On Mon, Jun 3, 2013 at 10:05 PM, Nathan Goldbaum <nathan12343@gmail.com>wrote:
Hey Mike,
Looks like it fails on 13.04. FWIW, the serial hdf5 package appears to be called libhdf5-7. If anyone else has success, let me know, it's possible I'm doing something silly.
-Nathan
$ sudo apt-get install yt Reading package lists... Done Building dependency tree Reading state information... Done Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation:
The following packages have unmet dependencies: yt : Depends: libhdf5-serial-1.8.4 but it is not installable Recommends: python-matplotlib (>= 1.1.0) but it is not going to be installed Recommends: python-pyx (>= 0.11.1) but it is not going to be installed Recommends: ipython (>= 0.12.1) but it is not going to be installed Recommends: ipython-notebook (>= 0.12.1) but it is not going to be installed Recommends: forthon (>= 0.8.11) but it is not going to be installed E: Unable to correct problems, you have held broken packages.
$ apt-cache search libhdf5 libhdf5-7 - Hierarchical Data Format 5 (HDF5) - runtime files - serial version libhdf5-7-dbg - Hierarchical Data Format 5 (HDF5) - Debug package libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial version libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 version libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 version libhdf5-mpich2-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich2 Debug package libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 version libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI version libhdf5-openmpi-7-dbg - Hierarchical Data Format 5 (HDF5) - OpenMPI Debug package libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files - OpenMPI version libhdf5-serial-dev - Hierarchical Data Format 5 (HDF5) - development files - transitionnal package
On Mon, Jun 3, 2013 at 9:54 PM, Michael Kuhlen <mqk@astro.berkeley.edu>wrote:
Great! I've repackaged this release in my Ubuntu PPA ( http://ppa.launchpad.net/kuhlen/ppa/ubuntu).
Btw, I've now also copied the packages over to Quantal Quetzal (12.10) and Raring Ringtail (13.04), so they should work there too. However, since I'm still on 12.04 I haven't been able to try them out myself. Please report back if you encounter problems.
Mike
On Mon, Jun 3, 2013 at 1:42 PM, Matthew Turk <matthewturk@gmail.com>wrote:
Hi all,
We're proud to release yt version 2.5.3. This is a scheduled point release that includes all bug fixes identified and fixed since the release of 2.5.2 on May 1.
Additions, changes and bug fixes include:
* yt can now export to RADMC3D * Athena frontend now supports Static Mesh Refinement and units ( http://hub.yt-project.org/nb/7l1zua ) * PlotWindows now have a set_font function and a new default font setting * Colorbars less likely to extend off the edge of a PlotWindow * Clumps overplotted on PlotWindows are now correctly cont
Oh sorry, forgot to actually copy the new package over to 12.10 and 13.04. *Now* it should work. If not, then let's take this offline and figure it out there. Mike On Tue, Jun 4, 2013 at 9:01 AM, Nathan Goldbaum <nathan12343@gmail.com>wrote:
Hey Mike,
I'm still seeing the same error from last night. Should I wait a bit longer for the package to rebuild?
Nathan
On Tuesday, June 4, 2013, Michael Kuhlen wrote:
Hi Nathan
Thanks for the report. Going from 12.04 to 12.10 the HDF5 library was apparently renamed to libhdf5-7, instead of libhdf5-serial-1.8.4. I've added libhdf5-7 as an alternative install dependency. The package is rebuilding on launchpad right now. Could you please try again once it's done (probably in a couple of hours)?
Thanks,
Mike
On Mon, Jun 3, 2013 at 10:05 PM, Nathan Goldbaum <nathan12343@gmail.com>wrote:
Hey Mike,
Looks like it fails on 13.04. FWIW, the serial hdf5 package appears to be called libhdf5-7. If anyone else has success, let me know, it's possible I'm doing something silly.
-Nathan
$ sudo apt-get install yt Reading package lists... Done Building dependency tree Reading state information... Done Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation:
The following packages have unmet dependencies: yt : Depends: libhdf5-serial-1.8.4 but it is not installable Recommends: python-matplotlib (>= 1.1.0) but it is not going to be installed Recommends: python-pyx (>= 0.11.1) but it is not going to be installed Recommends: ipython (>= 0.12.1) but it is not going to be installed Recommends: ipython-notebook (>= 0.12.1) but it is not going to be installed Recommends: forthon (>= 0.8.11) but it is not going to be installed E: Unable to correct problems, you have held broken packages.
$ apt-cache search libhdf5 libhdf5-7 - Hierarchical Data Format 5 (HDF5) - runtime files - serial version libhdf5-7-dbg - Hierarchical Data Format 5 (HDF5) - Debug package libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial version libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 version libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 version libhdf5-mpich2-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich2 Debug package libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 version libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI version libhdf5-openmpi-7-dbg - Hierarchical Data Format 5 (HDF5) - OpenMPI Debug package libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files - OpenMPI version libhdf5-serial-dev - Hierarchical Data Format 5 (HDF5) - development files - transitionnal package
On Mon, Jun 3, 2013 at 9:54 PM, Michael Kuhlen <mqk@astro.berkeley.edu>wrote:
Great! I've repackaged this release in my Ubuntu PPA ( http://ppa.launchpad.net/kuhlen/ppa/ubuntu).
Btw, I've now also copied the packages over to Quantal Quetzal (12.10) and Raring Ringtail (13.04), so they should work there too. However, since I'm still on 12.04 I haven't been able to try them out myself. Please report back if you encounter problems.
Mike
On Mon, Jun 3, 2013 at 1:42 PM, Matthew Turk <matthewturk@gmail.com>wrote:
Hi all,
We're proud to release yt version 2.5.3. This is a scheduled point release that includes all bug fixes identified and fixed since the release of 2.5.2 on May 1.
Additions, changes and bug fixes include:
* yt can now export to RADMC3D * Athena frontend now supports Static Mesh Refinement and units ( http://hub.yt-project.org/nb/7l1zua ) * PlotWindows now have a set_font function and a new default font setting * Colorbars less likely to extend off the edge of a PlotWindow * Clumps overplotted on PlotWindows are now correctly cont
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
-- ------------------------------ Dr. Michael Kuhlen Theoretical Astrophysics Center UC Berkeley
After a bit more back and forth between Nathan and I, we're happy to report that the yt Ubuntu packages now work for the 12.04, 12.10, and 13.04 releases. Mike On Tue, Jun 4, 2013 at 10:29 AM, Michael Kuhlen <mqk@astro.berkeley.edu>wrote:
Oh sorry, forgot to actually copy the new package over to 12.10 and 13.04. *Now* it should work. If not, then let's take this offline and figure it out there.
Mike
On Tue, Jun 4, 2013 at 9:01 AM, Nathan Goldbaum <nathan12343@gmail.com>wrote:
Hey Mike,
I'm still seeing the same error from last night. Should I wait a bit longer for the package to rebuild?
Nathan
On Tuesday, June 4, 2013, Michael Kuhlen wrote:
Hi Nathan
Thanks for the report. Going from 12.04 to 12.10 the HDF5 library was apparently renamed to libhdf5-7, instead of libhdf5-serial-1.8.4. I've added libhdf5-7 as an alternative install dependency. The package is rebuilding on launchpad right now. Could you please try again once it's done (probably in a couple of hours)?
Thanks,
Mike
On Mon, Jun 3, 2013 at 10:05 PM, Nathan Goldbaum <nathan12343@gmail.com>wrote:
Hey Mike,
Looks like it fails on 13.04. FWIW, the serial hdf5 package appears to be called libhdf5-7. If anyone else has success, let me know, it's possible I'm doing something silly.
-Nathan
$ sudo apt-get install yt Reading package lists... Done Building dependency tree Reading state information... Done Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation:
The following packages have unmet dependencies: yt : Depends: libhdf5-serial-1.8.4 but it is not installable Recommends: python-matplotlib (>= 1.1.0) but it is not going to be installed Recommends: python-pyx (>= 0.11.1) but it is not going to be installed Recommends: ipython (>= 0.12.1) but it is not going to be installed Recommends: ipython-notebook (>= 0.12.1) but it is not going to be installed Recommends: forthon (>= 0.8.11) but it is not going to be installed E: Unable to correct problems, you have held broken packages.
$ apt-cache search libhdf5 libhdf5-7 - Hierarchical Data Format 5 (HDF5) - runtime files - serial version libhdf5-7-dbg - Hierarchical Data Format 5 (HDF5) - Debug package libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial version libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 version libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 version libhdf5-mpich2-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich2 Debug package libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 version libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI version libhdf5-openmpi-7-dbg - Hierarchical Data Format 5 (HDF5) - OpenMPI Debug package libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files - OpenMPI version libhdf5-serial-dev - Hierarchical Data Format 5 (HDF5) - development files - transitionnal package
On Mon, Jun 3, 2013 at 9:54 PM, Michael Kuhlen <mqk@astro.berkeley.edu>wrote:
Great! I've repackaged this release in my Ubuntu PPA ( http://ppa.launchpad.net/kuhlen/ppa/ubuntu).
Btw, I've now also copied the packages over to Quantal Quetzal (12.10) and Raring Ringtail (13.04), so they should work there too. However, since I'm still on 12.04 I haven't been able to try them out myself. Please report back if you encounter problems.
Mike
On Mon, Jun 3, 2013 at 1:42 PM, Matthew Turk <matthewturk@gmail.com>wrote:
Hi all,
We're proud to release yt version 2.5.3. This is a scheduled point release that includes all bug fixes identified and fixed since the release of 2.5.2 on May 1.
Additions, changes and bug fixes include:
* yt can now export to RADMC3D * Athena frontend now supports Static Mesh Refinement and units ( http://hub.yt-project.org/nb/7l1zua ) * PlotWindows now have a set_font function and a new default font setting * Colorbars less likely to extend off the edge of a PlotWindow * Clumps overplotted on PlotWindows are now correctly cont
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-- ------------------------------
Dr. Michael Kuhlen Theoretical Astrophysics Center UC Berkeley
-- ------------------------------ Dr. Michael Kuhlen Theoretical Astrophysics Center UC Berkeley
participants (3)
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Matthew Turk -
Michael Kuhlen -
Nathan Goldbaum