Re: [yt-users] yt-users Digest, Vol 79, Issue 37
Thanks! That was the hint I needed. I am on a cluster that loads modules to
have access to various packages and I had the module for python loaded.
Unloading it, caused it to move forward.
thanks for the quick help everyone!
On Fri, Sep 26, 2014 at 5:34 PM,
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Today's Topics:
1. Re: yt-users Digest, Vol 79, Issue 35 (Nathan Goldbaum)
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Message: 1 Date: Fri, 26 Sep 2014 14:33:53 -0700 From: Nathan Goldbaum
To: Discussion of the yt analysis package Subject: Re: [yt-users] yt-users Digest, Vol 79, Issue 35 Message-ID: Content-Type: text/plain; charset="utf-8" Hmm, I guess it's possible that building yt's python failed, and later in the install script it is trying to install mercurial using the system python.
Would you mind uploading the full install log somewhere? Dropbox and google drive are useful for sharing big files like this over e-mail.
-Nathan
On Fri, Sep 26, 2014 at 2:29 PM, Brandon Bozek
wrote: Thanks for the series of replies.
I ran "bash install_script.sh" to start the install. I am able to create file/directory in the directory I am in. The install script creates ./yt-x86_64/ and downloads a bunch of files before hitting this hiccup.
On Fri, Sep 26, 2014 at 5:21 PM,
wrote: Send yt-users mailing list submissions to yt-users@lists.spacepope.org
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Today's Topics:
1. install error on large cluster (Brandon Bozek) 2. Re: install error on large cluster (Nathan Goldbaum) 3. Re: install error on large cluster (Chris Malone) 4. Re: install error on large cluster (Nathan Goldbaum)
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Message: 1 Date: Fri, 26 Sep 2014 17:03:58 -0400 From: Brandon Bozek
To: yt-users@lists.spacepope.org Subject: [yt-users] install error on large cluster Message-ID: Content-Type: text/plain; charset="utf-8" Hello All,
I am trying to install yt on a cluster at my institution and I ran the install script for the stable version and got this error: "error: could not create '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial': Read-only file system".
The last few lines are copied below. Please let me know if I should send anything else.
Thanks! Brandon
creating build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/coal-folder.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style-gitweb.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/background.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style-coal.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/hglogo.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style-paper.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/excanvas.js -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/coal-file.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/hgicon.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/mercurial.js -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/feed-icon-14x14.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style-monoblue.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
running build_scripts
creating build/scripts-2.7
copying and adjusting hg -> build/scripts-2.7
changing mode of build/scripts-2.7/hg from 644 to 755
running install
running build
running build_mo
running build_ext
running build_py
running build_scripts
running install_lib
creating /usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial
error: could not create '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial': Read-only file system -------------- next part -------------- An HTML attachment was scrubbed... URL: <
http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/2014...
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Message: 2 Date: Fri, 26 Sep 2014 14:07:04 -0700 From: Nathan Goldbaum
To: Discussion of the yt analysis package Subject: Re: [yt-users] install error on large cluster Message-ID: < CAJXewOmmu0Oux1FaTFndS4jT_ede0waH3_VdtzeHgKFuELr-oA@mail.gmail.com> Content-Type: text/plain; charset="utf-8" Hi Brandon,
How did you invoke the install script?
-Nathan
On Fri, Sep 26, 2014 at 2:03 PM, Brandon Bozek
wrote:
Hello All,
I am trying to install yt on a cluster at my institution and I ran the install script for the stable version and got this error: "error: could not create '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial': Read-only file system".
The last few lines are copied below. Please let me know if I should send anything else.
Thanks! Brandon
creating build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/coal-folder.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style-gitweb.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/background.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style-coal.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/hglogo.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style-paper.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/excanvas.js -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/coal-file.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/hgicon.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/mercurial.js -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/feed-icon-14x14.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style-monoblue.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
running build_scripts
creating build/scripts-2.7
copying and adjusting hg -> build/scripts-2.7
changing mode of build/scripts-2.7/hg from 644 to 755
running install
running build
running build_mo
running build_ext
running build_py
running build_scripts
running install_lib
creating /usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial
error: could not create '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial': Read-only file system
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
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Message: 3 Date: Fri, 26 Sep 2014 15:18:26 -0600 From: Chris Malone
To: Discussion of the yt analysis package Subject: Re: [yt-users] install error on large cluster Message-ID: < CAED6uLZnaSBn0z_9T4yzMd1PzQRrT3jUyRU+eWK6tqT3i7XC6A@mail.gmail.com> Content-Type: text/plain; charset="utf-8" Hi Brandon,
The 'Read-only file system' part makes me think the issue isn't related to the yt build. Usually that message happens when the filesystem detected an error and the OS remounts the file system in read-only mode. Are there any other issues on the FS? Are you able to manually create a file/directory on that FS?
Chris
On Fri, Sep 26, 2014 at 3:03 PM, Brandon Bozek
wrote:
Hello All,
I am trying to install yt on a cluster at my institution and I ran the install script for the stable version and got this error: "error: could not create '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial': Read-only file system".
The last few lines are copied below. Please let me know if I should send anything else.
Thanks! Brandon
creating build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/coal-folder.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style-gitweb.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/background.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style-coal.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/hglogo.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style-paper.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/excanvas.js -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/coal-file.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/hgicon.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/mercurial.js -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/feed-icon-14x14.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style-monoblue.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
running build_scripts
creating build/scripts-2.7
copying and adjusting hg -> build/scripts-2.7
changing mode of build/scripts-2.7/hg from 644 to 755
running install
running build
running build_mo
running build_ext
running build_py
running build_scripts
running install_lib
creating /usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial
error: could not create '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial': Read-only file system
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
-------------- next part -------------- An HTML attachment was scrubbed... URL: <
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Message: 4 Date: Fri, 26 Sep 2014 14:20:58 -0700 From: Nathan Goldbaum
To: Discussion of the yt analysis package Subject: Re: [yt-users] install error on large cluster Message-ID: < CAJXewOm4JzsXUGPhDpQ6CfnM1XNkMTR5xDemLx14hivKWy_dPA@mail.gmail.com> Content-Type: text/plain; charset="utf-8" On Fri, Sep 26, 2014 at 2:18 PM, Chris Malone
wrote:
Hi Brandon,
The 'Read-only file system' part makes me think the issue isn't related to the yt build. Usually that message happens when the filesystem detected an error and the OS remounts the file system in read-only mode. Are there any other issues on the FS? Are you able to manually create a file/directory on that FS?
Note that mercurial is being installed into /usr/local, which should never happen using the install script. That's why I asked how the install script was being invoked.
Chris
On Fri, Sep 26, 2014 at 3:03 PM, Brandon Bozek <
brandon.bozek@gmail.com
wrote:
Hello All,
I am trying to install yt on a cluster at my institution and I ran
the
install script for the stable version and got this error: "error: could not create '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial': Read-only file system".
The last few lines are copied below. Please let me know if I should send anything else.
Thanks! Brandon
creating build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/coal-folder.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style-gitweb.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/background.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style-coal.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/hglogo.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style-paper.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/excanvas.js -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/coal-file.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/hgicon.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/mercurial.js -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/feed-icon-14x14.png -> build/lib.linux-x86_64-2.7/mercurial/templates/static
copying mercurial/templates/static/style-monoblue.css -> build/lib.linux-x86_64-2.7/mercurial/templates/static
running build_scripts
creating build/scripts-2.7
copying and adjusting hg -> build/scripts-2.7
changing mode of build/scripts-2.7/hg from 644 to 755
running install
running build
running build_mo
running build_ext
running build_py
running build_scripts
running install_lib
creating /usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial
error: could not create '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial': Read-only file system
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
_______________________________________________ yt-users mailing list yt-users@lists.spacepope.org http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
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Brandon Bozek